Wall clock time and date at job start Tue Mar 31 2020 11:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47197 * 1 3 3 C 1.17394 * 179.97438 * 2 1 4 4 C 1.47209 * 179.97438 * 260.53174 * 3 2 1 5 5 C 1.52991 * 109.47440 * 337.97733 * 4 3 2 6 6 H 1.09008 * 109.46833 * 55.00310 * 5 4 3 7 7 C 1.53000 * 109.47327 * 175.00026 * 5 4 3 8 8 O 1.42898 * 109.46738 * 54.99953 * 7 5 4 9 9 N 1.46498 * 109.47334 * 295.00259 * 5 4 3 10 10 C 1.34783 * 120.00022 * 154.99534 * 9 5 4 11 11 O 1.21282 * 120.00033 * 0.02562 * 10 9 5 12 12 C 1.50697 * 119.99917 * 179.97438 * 10 9 5 13 13 C 1.50698 * 109.47110 * 180.02562 * 12 10 9 14 14 C 1.38320 * 119.96576 * 269.72177 * 13 12 10 15 15 C 1.38279 * 120.14055 * 179.76258 * 14 13 12 16 16 C 1.38121 * 120.06625 * 0.51629 * 15 14 13 17 17 C 1.38860 * 119.93148 * 359.74429 * 16 15 14 18 18 O 1.35755 * 120.06973 * 179.97438 * 17 16 15 19 19 C 1.34832 * 116.99667 * 354.48523 * 18 17 16 20 20 H 1.07995 * 120.00554 * 5.06358 * 19 18 17 21 21 C 1.38660 * 119.99633 * 185.05749 * 19 18 17 22 22 N 1.31555 * 119.99681 * 180.02562 * 21 19 18 23 23 Si 1.86797 * 120.00028 * 0.02562 * 21 19 18 24 24 H 1.48499 * 109.46922 * 89.99860 * 23 21 19 25 25 H 1.48498 * 109.47173 * 209.99865 * 23 21 19 26 26 H 1.48505 * 109.47159 * 330.00108 * 23 21 19 27 27 C 1.38085 * 119.96634 * 89.99950 * 13 12 10 28 28 H 1.09007 * 109.47196 * 301.48288 * 1 2 3 29 29 H 1.08993 * 109.47759 * 61.48615 * 1 2 3 30 30 H 1.09009 * 109.47098 * 181.49128 * 1 2 3 31 31 H 1.09000 * 109.46495 * 217.97934 * 4 3 2 32 32 H 1.09002 * 109.46657 * 97.98560 * 4 3 2 33 33 H 1.08996 * 109.47219 * 175.00198 * 7 5 4 34 34 H 1.09003 * 109.47185 * 295.00467 * 7 5 4 35 35 H 0.96706 * 113.99510 * 179.97438 * 8 7 5 36 36 H 0.96997 * 119.99933 * 335.00053 * 9 5 4 37 37 H 1.08997 * 109.47091 * 60.00219 * 12 10 9 38 38 H 1.09003 * 109.47227 * 300.00670 * 12 10 9 39 39 H 1.08005 * 119.92876 * 0.02562 * 14 13 12 40 40 H 1.07997 * 119.97151 * 180.25535 * 15 14 13 41 41 H 1.08005 * 120.03714 * 179.71820 * 16 15 14 42 42 H 0.97001 * 119.99674 * 179.97438 * 22 21 19 43 43 H 1.07996 * 120.03129 * 359.95667 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6459 0.0005 0.0000 4 6 4.1180 0.0013 0.0006 5 6 4.6285 -1.3356 0.5417 6 1 4.1946 -2.1512 -0.0368 7 6 6.1534 -1.3836 0.4265 8 8 6.7169 -0.2488 1.0874 9 7 4.2404 -1.4737 1.9476 10 6 4.1140 -2.6990 2.4946 11 8 4.3219 -3.6873 1.8230 12 6 3.7153 -2.8410 3.9409 13 6 3.6461 -4.3025 4.3017 14 6 2.4585 -4.9957 4.1520 15 6 2.3923 -6.3380 4.4773 16 6 3.5098 -6.9883 4.9631 17 6 4.7021 -6.2939 5.1197 18 8 5.8021 -6.9301 5.5974 19 6 5.6420 -8.2043 6.0084 20 1 4.6920 -8.6999 5.8737 21 6 6.6973 -8.8783 6.6040 22 7 6.5413 -10.1217 7.0045 23 14 8.3404 -8.0209 6.8376 24 1 8.3587 -7.3368 8.1554 25 1 9.4340 -9.0241 6.7853 26 1 8.5345 -7.0202 5.7576 27 6 4.7669 -4.9470 4.7869 28 1 -0.3634 0.5367 0.8764 29 1 -0.3634 0.4905 -0.9029 30 1 -0.3634 -1.0274 0.0267 31 1 4.4805 0.8116 0.6332 32 1 4.4816 0.1443 -1.0169 33 1 6.5244 -2.2966 0.8922 34 1 6.4389 -1.3702 -0.6253 35 1 7.6828 -0.2142 1.0547 36 1 4.0744 -0.6833 2.4848 37 1 2.7390 -2.3817 4.0955 38 1 4.4537 -2.3459 4.5717 39 1 1.5822 -4.4884 3.7762 40 1 1.4647 -6.8776 4.3555 41 1 3.4563 -8.0356 5.2214 42 1 7.2796 -10.5933 7.4208 43 1 5.6928 -4.4043 4.9072 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844113401.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:01 Heat of formation + Delta-G solvation = -73.927257 kcal Electronic energy + Delta-G solvation = -25317.465310 eV Core-core repulsion = 21521.506769 eV Total energy + Delta-G solvation = -3795.958541 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.26778 -40.60920 -38.70645 -38.01376 -36.26780 -34.75700 -34.48799 -33.62204 -32.18823 -31.07056 -29.57722 -28.23897 -27.16050 -26.68100 -23.60241 -23.08292 -22.02926 -21.36880 -19.67161 -18.96761 -18.67525 -17.95241 -17.69092 -16.91729 -16.88776 -16.62789 -16.22182 -15.74216 -15.68480 -15.31141 -15.17191 -15.06810 -14.74065 -14.54570 -14.40056 -14.31095 -14.14914 -14.05766 -13.96105 -13.66211 -13.06375 -13.01651 -12.73295 -12.53449 -12.51120 -12.45139 -12.35024 -11.93940 -11.32348 -11.13609 -10.94338 -10.89073 -10.63060 -10.57346 -10.06609 -9.67747 -9.07583 -8.50872 -6.23674 0.47617 0.68965 1.28962 1.33778 1.50471 1.68021 1.74449 1.80007 2.20952 2.27337 2.77999 3.03864 3.13833 3.31772 3.36722 3.75585 3.88912 4.05718 4.11635 4.13650 4.28645 4.35957 4.41686 4.50638 4.54556 4.61707 4.64874 4.69354 4.74134 4.81458 4.85661 4.89608 4.95990 5.02332 5.14286 5.23758 5.38399 5.51015 5.63992 5.71507 5.75773 5.90554 6.23685 6.57633 6.75049 6.83345 6.85579 7.30729 7.58135 8.61004 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016675 B = 0.002855 C = 0.002514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.762620 B = 9806.081234 C =11136.974341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 C -0.205 4.205 3 C -0.214 4.214 4 C 0.003 3.997 5 C 0.152 3.848 6 H 0.080 0.920 7 C 0.069 3.931 8 O -0.575 6.575 9 N -0.707 5.707 10 C 0.516 3.484 11 O -0.578 6.578 12 C -0.091 4.091 13 C -0.027 4.027 14 C -0.172 4.172 15 C -0.077 4.077 16 C -0.240 4.240 17 C 0.120 3.880 18 O -0.247 6.247 19 C -0.400 4.400 20 H 0.080 0.920 21 C 0.009 3.991 22 N -0.924 5.924 23 Si 0.972 3.028 24 H -0.262 1.262 25 H -0.266 1.266 26 H -0.267 1.267 27 C -0.181 4.181 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.083 0.917 31 H 0.109 0.891 32 H 0.116 0.884 33 H 0.029 0.971 34 H 0.078 0.922 35 H 0.397 0.603 36 H 0.414 0.586 37 H 0.138 0.862 38 H 0.125 0.875 39 H 0.146 0.854 40 H 0.141 0.859 41 H 0.108 0.892 42 H 0.285 0.715 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.057 26.981 -13.486 30.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.205 4.205 3 C -0.214 4.214 4 C -0.033 4.033 5 C 0.047 3.953 6 H 0.098 0.902 7 C -0.010 4.010 8 O -0.384 6.384 9 N -0.359 5.359 10 C 0.303 3.697 11 O -0.457 6.457 12 C -0.130 4.130 13 C -0.027 4.027 14 C -0.190 4.190 15 C -0.095 4.095 16 C -0.260 4.260 17 C 0.071 3.929 18 O -0.154 6.154 19 C -0.477 4.477 20 H 0.097 0.903 21 C -0.189 4.189 22 N -0.565 5.565 23 Si 0.794 3.206 24 H -0.187 1.187 25 H -0.190 1.190 26 H -0.191 1.191 27 C -0.200 4.200 28 H 0.112 0.888 29 H 0.111 0.889 30 H 0.102 0.898 31 H 0.127 0.873 32 H 0.134 0.866 33 H 0.048 0.952 34 H 0.096 0.904 35 H 0.247 0.753 36 H 0.251 0.749 37 H 0.156 0.844 38 H 0.143 0.857 39 H 0.163 0.837 40 H 0.158 0.842 41 H 0.126 0.874 42 H 0.095 0.905 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -7.219 26.309 -13.742 30.547 hybrid contribution 1.125 -0.716 0.356 1.380 sum -6.095 25.593 -13.386 29.518 Atomic orbital electron populations 1.19044 0.82997 1.03761 1.04246 1.23266 0.95197 1.00646 1.01347 1.22717 0.94368 1.02272 1.02016 1.18840 0.83542 0.96856 1.04079 1.21014 0.93108 0.98292 0.82872 0.90167 1.22486 0.92825 0.88249 0.97418 1.86365 1.27262 1.45290 1.79444 1.45836 1.70011 1.07959 1.12127 1.20888 0.75998 0.82890 0.89900 1.90747 1.51459 1.39173 1.64315 1.20684 1.06847 0.92979 0.92515 1.19196 0.92282 0.95393 0.95869 1.20990 0.98352 0.94276 1.05391 1.21103 0.97235 0.95138 0.96019 1.21321 0.94477 1.00784 1.09373 1.19576 0.86628 0.92623 0.94061 1.83508 1.31719 1.26956 1.73254 1.20719 1.01417 0.85969 1.39555 0.90281 1.25291 1.02707 0.95846 0.95053 1.69732 1.34869 1.11075 1.40788 0.85208 0.77467 0.78444 0.79510 1.18673 1.19015 1.19141 1.20248 1.00018 0.91284 1.08434 0.88843 0.88915 0.89815 0.87286 0.86645 0.95240 0.90381 0.75332 0.74884 0.84435 0.85735 0.83660 0.84156 0.87433 0.90548 0.86109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.48 10.32 70.18 0.72 0.25 16 2 C -0.20 -3.63 14.13 31.12 0.44 -3.19 16 3 C -0.21 -3.83 13.06 31.13 0.41 -3.42 16 4 C 0.00 0.05 4.97 28.79 0.14 0.19 16 5 C 0.15 2.72 2.34 44.99 0.11 2.83 16 6 H 0.08 1.83 7.58 -2.38 -0.02 1.81 16 7 C 0.07 1.11 6.85 71.98 0.49 1.60 16 8 O -0.58 -7.57 12.83 -148.98 -1.91 -9.48 16 9 N -0.71 -13.26 4.72 -442.54 -2.09 -15.35 16 10 C 0.52 13.47 7.79 87.66 0.68 14.16 16 11 O -0.58 -21.28 15.70 -3.04 -0.05 -21.33 16 12 C -0.09 -2.03 5.83 29.10 0.17 -1.86 16 13 C -0.03 -0.90 4.37 -19.88 -0.09 -0.98 16 14 C -0.17 -5.62 9.70 22.30 0.22 -5.41 16 15 C -0.08 -2.89 10.04 22.25 0.22 -2.67 16 16 C -0.24 -11.40 9.17 22.39 0.21 -11.19 16 17 C 0.12 6.04 6.65 22.58 0.15 6.19 16 18 O -0.25 -14.19 8.59 -22.81 -0.20 -14.38 16 19 C -0.40 -24.67 9.95 67.92 0.68 -24.00 16 20 H 0.08 5.11 5.44 -2.91 -0.02 5.09 16 21 C 0.01 0.55 5.49 84.84 0.47 1.01 16 22 N -0.92 -56.71 13.96 21.61 0.30 -56.41 16 23 Si 0.97 46.96 28.62 68.60 1.96 48.93 16 24 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 25 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 26 H -0.27 -13.04 7.11 99.48 0.71 -12.34 16 27 C -0.18 -7.55 9.65 22.39 0.22 -7.33 16 28 H 0.09 0.72 8.14 -2.38 -0.02 0.71 16 29 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 31 H 0.11 1.27 7.73 -2.39 -0.02 1.25 16 32 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.40 2.39 9.12 -74.05 -0.68 1.72 16 36 H 0.41 5.60 8.60 -92.71 -0.80 4.80 16 37 H 0.14 2.05 8.08 -2.39 -0.02 2.04 16 38 H 0.12 2.24 8.08 -2.39 -0.02 2.22 16 39 H 0.15 3.63 8.06 -2.91 -0.02 3.61 16 40 H 0.14 4.32 8.06 -2.91 -0.02 4.30 16 41 H 0.11 5.54 5.64 -2.91 -0.02 5.52 16 42 H 0.28 15.98 8.31 -92.71 -0.77 15.21 16 43 H 0.12 4.74 8.06 -2.91 -0.02 4.72 16 Total: -1.00 -82.40 377.63 2.83 -79.57 By element: Atomic # 1 Polarization: 22.69 SS G_CDS: -0.42 Total: 22.28 kcal Atomic # 6 Polarization: -39.06 SS G_CDS: 5.23 Total: -33.83 kcal Atomic # 7 Polarization: -69.97 SS G_CDS: -1.79 Total: -71.75 kcal Atomic # 8 Polarization: -43.04 SS G_CDS: -2.15 Total: -45.19 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 1.96 Total: 48.93 kcal Total: -82.40 2.83 -79.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844113401.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.642 kcal (2) G-P(sol) polarization free energy of solvation -82.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds