Wall clock time and date at job start Tue Mar 31 2020 11:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47204 * 1 3 3 C 1.17402 * 179.97438 * 2 1 4 4 C 1.47195 * 179.97438 * 158.11490 * 3 2 1 5 5 C 1.53007 * 109.47097 * 316.19190 * 4 3 2 6 6 H 1.08993 * 109.47086 * 305.00254 * 5 4 3 7 7 C 1.53002 * 109.47006 * 184.99849 * 5 4 3 8 8 O 1.42906 * 109.47292 * 305.00131 * 7 5 4 9 9 N 1.46503 * 109.46672 * 65.00291 * 5 4 3 10 10 C 1.34783 * 119.99585 * 204.99678 * 9 5 4 11 11 O 1.21284 * 119.99976 * 0.02562 * 10 9 5 12 12 C 1.50699 * 120.00059 * 179.97438 * 10 9 5 13 13 C 1.50699 * 109.47151 * 180.02562 * 12 10 9 14 14 C 1.38328 * 119.96224 * 270.02423 * 13 12 10 15 15 C 1.38279 * 120.13490 * 179.97438 * 14 13 12 16 16 C 1.38120 * 120.06774 * 359.77134 * 15 14 13 17 17 C 1.38852 * 119.93464 * 0.50144 * 16 15 14 18 18 O 1.35752 * 120.07221 * 179.74702 * 17 16 15 19 19 C 1.34829 * 116.99954 * 354.17311 * 18 17 16 20 20 H 1.07998 * 119.99999 * 5.03596 * 19 18 17 21 21 C 1.38656 * 119.99670 * 185.03445 * 19 18 17 22 22 N 1.31550 * 120.00275 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99668 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47063 * 60.00398 * 23 21 19 25 25 H 1.48498 * 109.47240 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47319 * 300.00306 * 23 21 19 27 27 C 1.38073 * 119.96539 * 89.99818 * 13 12 10 28 28 H 1.09006 * 109.46589 * 65.69149 * 1 2 3 29 29 H 1.08997 * 109.46986 * 185.68880 * 1 2 3 30 30 H 1.08997 * 109.46971 * 305.69580 * 1 2 3 31 31 H 1.08997 * 109.47002 * 196.19559 * 4 3 2 32 32 H 1.09005 * 109.47130 * 76.19084 * 4 3 2 33 33 H 1.08998 * 109.46739 * 65.00091 * 7 5 4 34 34 H 1.08993 * 109.47250 * 185.00078 * 7 5 4 35 35 H 0.96694 * 113.99739 * 179.97438 * 8 7 5 36 36 H 0.97001 * 120.00603 * 25.00108 * 9 5 4 37 37 H 1.09004 * 109.46756 * 60.00007 * 12 10 9 38 38 H 1.08998 * 109.46908 * 300.00650 * 12 10 9 39 39 H 1.08001 * 119.93314 * 359.97438 * 14 13 12 40 40 H 1.07999 * 119.96467 * 180.02562 * 15 14 13 41 41 H 1.08001 * 120.03298 * 180.27571 * 16 15 14 42 42 H 0.96999 * 119.99936 * 179.97438 * 22 21 19 43 43 H 1.07996 * 120.03547 * 0.04988 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6461 0.0005 0.0000 4 6 4.1180 0.0018 -0.0002 5 6 4.6291 -1.0388 0.9983 6 1 4.1945 -0.8455 1.9789 7 6 6.1539 -0.9518 1.0900 8 8 6.7183 -1.0896 -0.2157 9 7 4.2426 -2.3784 0.5482 10 6 4.1168 -3.3793 1.4421 11 8 4.3231 -3.1709 2.6189 12 6 3.7187 -4.7571 0.9793 13 6 3.6490 -5.6847 2.1650 14 6 4.7718 -6.3917 2.5560 15 6 4.7120 -7.2434 3.6437 16 6 3.5314 -7.3868 4.3462 17 6 2.4011 -6.6828 3.9528 18 8 1.2380 -6.8256 4.6381 19 6 1.2130 -7.7552 5.6144 20 1 2.1151 -8.2885 5.8755 21 6 0.0290 -8.0265 6.2831 22 7 -1.0699 -7.3772 5.9647 23 14 -0.0058 -9.3149 7.6352 24 1 0.9350 -8.9241 8.7157 25 1 -1.3805 -9.4156 8.1878 26 1 0.4002 -10.6296 7.0768 27 6 2.4647 -5.8273 2.8603 28 1 -0.3633 0.4231 -0.9366 29 1 -0.3633 -1.0226 0.1019 30 1 -0.3633 0.5996 0.8346 31 1 4.4805 0.9890 0.2863 32 1 4.4814 -0.2432 -0.9983 33 1 6.4381 0.0136 1.5087 34 1 6.5254 -1.7500 1.7324 35 1 7.6840 -1.0437 -0.2335 36 1 4.0773 -2.5450 -0.3929 37 1 4.4572 -5.1294 0.2692 38 1 2.7424 -4.7104 0.4970 39 1 5.6970 -6.2784 2.0105 40 1 5.5904 -7.7938 3.9468 41 1 3.4866 -8.0488 5.1984 42 1 -1.8983 -7.5673 6.4323 43 1 1.5883 -5.2753 2.5543 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844113402.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:06 Heat of formation + Delta-G solvation = -49.844939 kcal Electronic energy + Delta-G solvation = -25301.819710 eV Core-core repulsion = 21506.905457 eV Total energy + Delta-G solvation = -3794.914253 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -39.98381 -38.84942 -37.57559 -36.36440 -35.47869 -33.86741 -32.40303 -32.07570 -31.16708 -29.16550 -28.71134 -26.84642 -25.97702 -25.17381 -22.22189 -21.52507 -20.79709 -20.16914 -17.96801 -17.64060 -17.18268 -16.79019 -16.68625 -15.95749 -15.38867 -15.00152 -14.63443 -14.50860 -14.36623 -14.14509 -13.95620 -13.71842 -13.61941 -13.43454 -13.33993 -13.28418 -13.05145 -12.51545 -12.34586 -12.09886 -11.81054 -11.72256 -11.44290 -11.20271 -10.76937 -10.71920 -10.55422 -10.41409 -10.40828 -9.92853 -9.82454 -9.61526 -9.27182 -9.06384 -8.77019 -7.98511 -7.14196 -6.37784 -3.96764 2.17185 2.47016 2.56876 2.60637 2.84052 3.17141 3.17592 3.21031 3.25546 3.99102 4.02367 4.04889 4.58819 4.67876 4.88521 4.98343 5.06076 5.12083 5.17331 5.20120 5.30925 5.38774 5.39646 5.43927 5.48917 5.56793 5.60136 5.74627 5.78534 5.82016 5.84895 6.00893 6.25185 6.41507 6.45430 6.73745 6.99647 7.14139 7.29332 7.34965 7.44006 7.50882 7.52423 7.58567 7.90870 8.07405 8.39425 9.07924 9.79617 10.80582 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014500 B = 0.002862 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.538644 B = 9780.386063 C =11220.575274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 C -0.181 4.181 3 C -0.196 4.196 4 C -0.005 4.005 5 C 0.154 3.846 6 H 0.103 0.897 7 C 0.063 3.937 8 O -0.570 6.570 9 N -0.724 5.724 10 C 0.516 3.484 11 O -0.523 6.523 12 C -0.094 4.094 13 C -0.031 4.031 14 C -0.196 4.196 15 C -0.075 4.075 16 C -0.231 4.231 17 C 0.155 3.845 18 O -0.180 6.180 19 C -0.391 4.391 20 H 0.091 0.909 21 C 0.039 3.961 22 N -0.865 5.865 23 Si 0.940 3.060 24 H -0.270 1.270 25 H -0.278 1.278 26 H -0.270 1.270 27 C -0.174 4.174 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.379 0.621 36 H 0.401 0.599 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.102 0.898 40 H 0.107 0.893 41 H 0.126 0.874 42 H 0.269 0.731 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.404 13.032 -14.369 22.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.181 4.181 3 C -0.196 4.196 4 C -0.041 4.041 5 C 0.049 3.951 6 H 0.121 0.879 7 C -0.016 4.016 8 O -0.376 6.376 9 N -0.378 5.378 10 C 0.303 3.697 11 O -0.397 6.397 12 C -0.134 4.134 13 C -0.032 4.032 14 C -0.215 4.215 15 C -0.094 4.094 16 C -0.251 4.251 17 C 0.102 3.898 18 O -0.084 6.084 19 C -0.467 4.467 20 H 0.108 0.892 21 C -0.165 4.165 22 N -0.501 5.501 23 Si 0.765 3.235 24 H -0.195 1.195 25 H -0.203 1.203 26 H -0.195 1.195 27 C -0.194 4.194 28 H 0.097 0.903 29 H 0.101 0.899 30 H 0.098 0.902 31 H 0.115 0.885 32 H 0.116 0.884 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.226 0.774 36 H 0.235 0.765 37 H 0.116 0.884 38 H 0.116 0.884 39 H 0.120 0.880 40 H 0.125 0.875 41 H 0.143 0.857 42 H 0.079 0.921 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 10.434 13.248 -13.582 21.653 hybrid contribution 0.557 -0.645 0.494 0.985 sum 10.991 12.602 -13.088 21.235 Atomic orbital electron populations 1.18887 0.84698 1.03465 1.02823 1.22446 0.93951 1.00851 1.00900 1.22135 0.93465 1.02015 1.02021 1.18815 0.84594 0.99560 1.01176 1.20969 0.92223 0.82521 0.99372 0.87926 1.22667 0.93741 1.00472 0.84714 1.86432 1.25404 1.96703 1.29026 1.45961 1.71770 1.08958 1.11068 1.20760 0.76505 0.86366 0.86100 1.90746 1.48659 1.83349 1.16993 1.20582 1.03698 0.91116 0.97967 1.18663 0.93456 0.95909 0.95178 1.20340 0.97125 1.02966 1.01084 1.20670 0.96600 0.97250 0.94831 1.21163 0.93414 1.06407 1.04066 1.19272 0.86917 0.93053 0.90591 1.83976 1.28501 1.52427 1.43497 1.21268 0.96992 1.16361 1.12103 0.89207 1.25263 0.94186 0.98333 0.98731 1.70030 0.99824 1.39778 1.40427 0.85798 0.77853 0.79923 0.79942 1.19546 1.20327 1.19550 1.19944 0.97993 1.03920 0.97495 0.90325 0.89867 0.90167 0.88533 0.88396 0.92673 0.92429 0.77445 0.76508 0.88403 0.88365 0.87998 0.87524 0.85657 0.92083 0.86905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.37 10.32 34.37 0.35 -0.02 16 2 C -0.18 -2.12 14.13 -37.12 -0.52 -2.65 16 3 C -0.20 -2.24 13.05 -37.12 -0.48 -2.73 16 4 C 0.00 -0.04 4.97 -29.52 -0.15 -0.19 16 5 C 0.15 1.62 2.34 -67.92 -0.16 1.47 16 6 H 0.10 1.31 7.57 -51.93 -0.39 0.91 16 7 C 0.06 0.55 6.85 37.16 0.25 0.81 16 8 O -0.57 -4.34 12.83 -35.23 -0.45 -4.79 16 9 N -0.72 -8.30 4.72 -53.80 -0.25 -8.55 16 10 C 0.52 7.83 7.79 -10.98 -0.09 7.74 16 11 O -0.52 -10.32 15.70 5.55 0.09 -10.24 16 12 C -0.09 -1.33 5.83 -29.04 -0.17 -1.50 16 13 C -0.03 -0.60 4.37 -104.65 -0.46 -1.06 16 14 C -0.20 -3.66 9.70 -39.53 -0.38 -4.04 16 15 C -0.08 -1.49 10.04 -39.61 -0.40 -1.88 16 16 C -0.23 -5.35 9.17 -39.40 -0.36 -5.71 16 17 C 0.15 3.97 6.65 -39.11 -0.26 3.72 16 18 O -0.18 -5.37 9.76 0.05 0.00 -5.37 16 19 C -0.39 -11.32 9.49 30.89 0.29 -11.03 16 20 H 0.09 2.41 5.21 -52.49 -0.27 2.14 16 21 C 0.04 1.09 5.49 -17.52 -0.10 1.00 16 22 N -0.87 -26.03 13.67 55.48 0.76 -25.27 16 23 Si 0.94 21.08 29.55 -169.99 -5.02 16.06 16 24 H -0.27 -5.89 7.11 56.52 0.40 -5.48 16 25 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 26 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 27 C -0.17 -3.95 9.65 -39.39 -0.38 -4.33 16 28 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.10 0.79 7.73 -51.93 -0.40 0.39 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.38 1.41 9.12 45.56 0.42 1.82 16 36 H 0.40 3.73 8.60 -40.82 -0.35 3.38 16 37 H 0.10 1.09 8.09 -51.93 -0.42 0.67 16 38 H 0.10 1.23 8.08 -51.93 -0.42 0.81 16 39 H 0.10 1.61 8.06 -52.49 -0.42 1.19 16 40 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 41 H 0.13 2.87 5.64 -52.49 -0.30 2.57 16 42 H 0.27 7.43 8.31 -40.82 -0.34 7.10 16 43 H 0.11 2.50 8.06 -52.49 -0.42 2.07 16 LS Contribution 378.76 15.07 5.71 5.71 Total: -1.00 -36.82 378.76 -7.26 -44.07 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -5.08 Total: 8.79 kcal Atomic # 6 Polarization: -17.40 SS G_CDS: -3.00 Total: -20.40 kcal Atomic # 7 Polarization: -34.33 SS G_CDS: 0.50 Total: -33.83 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: -0.36 Total: -20.40 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -36.82 -7.26 -44.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844113402.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.772 kcal (2) G-P(sol) polarization free energy of solvation -36.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds