Wall clock time and date at job start Tue Mar 31 2020 11:53:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47204 * 1 3 3 C 1.17402 * 179.97438 * 2 1 4 4 C 1.47195 * 179.97438 * 158.11490 * 3 2 1 5 5 C 1.53007 * 109.47097 * 316.19190 * 4 3 2 6 6 H 1.08993 * 109.47086 * 305.00254 * 5 4 3 7 7 C 1.53002 * 109.47006 * 184.99849 * 5 4 3 8 8 O 1.42906 * 109.47292 * 305.00131 * 7 5 4 9 9 N 1.46503 * 109.46672 * 65.00291 * 5 4 3 10 10 C 1.34783 * 119.99585 * 204.99678 * 9 5 4 11 11 O 1.21284 * 119.99976 * 0.02562 * 10 9 5 12 12 C 1.50699 * 120.00059 * 179.97438 * 10 9 5 13 13 C 1.50699 * 109.47151 * 180.02562 * 12 10 9 14 14 C 1.38328 * 119.96224 * 270.02423 * 13 12 10 15 15 C 1.38279 * 120.13490 * 179.97438 * 14 13 12 16 16 C 1.38120 * 120.06774 * 359.77134 * 15 14 13 17 17 C 1.38852 * 119.93464 * 0.50144 * 16 15 14 18 18 O 1.35752 * 120.07221 * 179.74702 * 17 16 15 19 19 C 1.34829 * 116.99954 * 354.17311 * 18 17 16 20 20 H 1.07998 * 119.99999 * 5.03596 * 19 18 17 21 21 C 1.38656 * 119.99670 * 185.03445 * 19 18 17 22 22 N 1.31550 * 120.00275 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99668 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47063 * 60.00398 * 23 21 19 25 25 H 1.48498 * 109.47240 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47319 * 300.00306 * 23 21 19 27 27 C 1.38073 * 119.96539 * 89.99818 * 13 12 10 28 28 H 1.09006 * 109.46589 * 65.69149 * 1 2 3 29 29 H 1.08997 * 109.46986 * 185.68880 * 1 2 3 30 30 H 1.08997 * 109.46971 * 305.69580 * 1 2 3 31 31 H 1.08997 * 109.47002 * 196.19559 * 4 3 2 32 32 H 1.09005 * 109.47130 * 76.19084 * 4 3 2 33 33 H 1.08998 * 109.46739 * 65.00091 * 7 5 4 34 34 H 1.08993 * 109.47250 * 185.00078 * 7 5 4 35 35 H 0.96694 * 113.99739 * 179.97438 * 8 7 5 36 36 H 0.97001 * 120.00603 * 25.00108 * 9 5 4 37 37 H 1.09004 * 109.46756 * 60.00007 * 12 10 9 38 38 H 1.08998 * 109.46908 * 300.00650 * 12 10 9 39 39 H 1.08001 * 119.93314 * 359.97438 * 14 13 12 40 40 H 1.07999 * 119.96467 * 180.02562 * 15 14 13 41 41 H 1.08001 * 120.03298 * 180.27571 * 16 15 14 42 42 H 0.96999 * 119.99936 * 179.97438 * 22 21 19 43 43 H 1.07996 * 120.03547 * 0.04988 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6461 0.0005 0.0000 4 6 4.1180 0.0018 -0.0002 5 6 4.6291 -1.0388 0.9983 6 1 4.1945 -0.8455 1.9789 7 6 6.1539 -0.9518 1.0900 8 8 6.7183 -1.0896 -0.2157 9 7 4.2426 -2.3784 0.5482 10 6 4.1168 -3.3793 1.4421 11 8 4.3231 -3.1709 2.6189 12 6 3.7187 -4.7571 0.9793 13 6 3.6490 -5.6847 2.1650 14 6 4.7718 -6.3917 2.5560 15 6 4.7120 -7.2434 3.6437 16 6 3.5314 -7.3868 4.3462 17 6 2.4011 -6.6828 3.9528 18 8 1.2380 -6.8256 4.6381 19 6 1.2130 -7.7552 5.6144 20 1 2.1151 -8.2885 5.8755 21 6 0.0290 -8.0265 6.2831 22 7 -1.0699 -7.3772 5.9647 23 14 -0.0058 -9.3149 7.6352 24 1 0.9350 -8.9241 8.7157 25 1 -1.3805 -9.4156 8.1878 26 1 0.4002 -10.6296 7.0768 27 6 2.4647 -5.8273 2.8603 28 1 -0.3633 0.4231 -0.9366 29 1 -0.3633 -1.0226 0.1019 30 1 -0.3633 0.5996 0.8346 31 1 4.4805 0.9890 0.2863 32 1 4.4814 -0.2432 -0.9983 33 1 6.4381 0.0136 1.5087 34 1 6.5254 -1.7500 1.7324 35 1 7.6840 -1.0437 -0.2335 36 1 4.0773 -2.5450 -0.3929 37 1 4.4572 -5.1294 0.2692 38 1 2.7424 -4.7104 0.4970 39 1 5.6970 -6.2784 2.0105 40 1 5.5904 -7.7938 3.9468 41 1 3.4866 -8.0488 5.1984 42 1 -1.8983 -7.5673 6.4323 43 1 1.5883 -5.2753 2.5543 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844113402.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:05 Heat of formation + Delta-G solvation = -77.044258 kcal Electronic energy + Delta-G solvation = -25302.999161 eV Core-core repulsion = 21506.905457 eV Total energy + Delta-G solvation = -3796.093704 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.23341 -40.51851 -38.64146 -37.95203 -36.26769 -34.78354 -34.34783 -33.57016 -32.19611 -30.87302 -29.58880 -28.24762 -27.21974 -26.69584 -23.51780 -23.14761 -22.10295 -21.40346 -19.52228 -18.86220 -18.65113 -17.95670 -17.70626 -16.92507 -16.70882 -16.61557 -16.11436 -15.98902 -15.55752 -15.35676 -15.18658 -14.93889 -14.80063 -14.55259 -14.36354 -14.32102 -14.07952 -14.00682 -13.72031 -13.58920 -13.02419 -12.95073 -12.72969 -12.52289 -12.45327 -12.39404 -12.22656 -12.13116 -11.21573 -11.12360 -10.93016 -10.79677 -10.64777 -10.60805 -10.07117 -9.64347 -8.98321 -8.47052 -6.15974 0.51490 0.75447 1.33536 1.45098 1.50441 1.66533 1.70658 1.75947 2.17439 2.21271 2.84983 3.17673 3.29584 3.37990 3.43579 3.79509 3.88738 4.08560 4.12218 4.14415 4.31219 4.35796 4.42267 4.52692 4.57789 4.61490 4.64421 4.71720 4.72953 4.76561 4.80905 4.87202 4.99848 5.07121 5.10820 5.12481 5.30065 5.50322 5.64623 5.72312 5.74993 6.02433 6.22910 6.56351 6.71332 6.90782 6.97144 7.29657 7.78825 8.76437 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014500 B = 0.002862 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.538644 B = 9780.386063 C =11220.575274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 C -0.210 4.210 3 C -0.211 4.211 4 C 0.004 3.996 5 C 0.149 3.851 6 H 0.075 0.925 7 C 0.074 3.926 8 O -0.575 6.575 9 N -0.707 5.707 10 C 0.516 3.484 11 O -0.578 6.578 12 C -0.092 4.092 13 C -0.024 4.024 14 C -0.180 4.180 15 C -0.073 4.073 16 C -0.247 4.247 17 C 0.113 3.887 18 O -0.235 6.235 19 C -0.416 4.416 20 H 0.101 0.899 21 C -0.024 4.024 22 N -0.922 5.922 23 Si 1.020 2.980 24 H -0.259 1.259 25 H -0.270 1.270 26 H -0.255 1.255 27 C -0.194 4.194 28 H 0.099 0.901 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.118 0.882 32 H 0.113 0.887 33 H 0.078 0.922 34 H 0.036 0.964 35 H 0.398 0.602 36 H 0.414 0.586 37 H 0.142 0.858 38 H 0.115 0.885 39 H 0.147 0.853 40 H 0.147 0.853 41 H 0.119 0.881 42 H 0.273 0.727 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.454 13.100 -16.266 25.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.210 4.210 3 C -0.211 4.211 4 C -0.033 4.033 5 C 0.044 3.956 6 H 0.093 0.907 7 C -0.005 4.005 8 O -0.383 6.383 9 N -0.359 5.359 10 C 0.304 3.696 11 O -0.457 6.457 12 C -0.131 4.131 13 C -0.025 4.025 14 C -0.198 4.198 15 C -0.090 4.090 16 C -0.266 4.266 17 C 0.063 3.937 18 O -0.142 6.142 19 C -0.492 4.492 20 H 0.118 0.882 21 C -0.221 4.221 22 N -0.561 5.561 23 Si 0.839 3.161 24 H -0.183 1.183 25 H -0.194 1.194 26 H -0.180 1.180 27 C -0.214 4.214 28 H 0.117 0.883 29 H 0.099 0.901 30 H 0.104 0.896 31 H 0.136 0.864 32 H 0.131 0.869 33 H 0.096 0.904 34 H 0.054 0.946 35 H 0.248 0.752 36 H 0.251 0.749 37 H 0.160 0.840 38 H 0.133 0.867 39 H 0.165 0.835 40 H 0.164 0.836 41 H 0.137 0.863 42 H 0.082 0.918 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 13.550 13.345 -15.566 24.576 hybrid contribution -0.150 -0.506 0.821 0.976 sum 13.399 12.840 -14.745 23.703 Atomic orbital electron populations 1.19031 0.83403 1.03609 1.04186 1.23254 0.95235 1.01246 1.01279 1.22836 0.94524 1.01857 1.01921 1.18894 0.83024 1.00015 1.01329 1.21050 0.93755 0.82229 0.98558 0.90736 1.22420 0.92081 1.00925 0.85052 1.86378 1.27290 1.96707 1.27939 1.45836 1.70118 1.08730 1.11264 1.20862 0.75926 0.87213 0.85629 1.90739 1.51517 1.84228 1.19196 1.20687 1.06214 0.89653 0.96574 1.19170 0.91981 0.95701 0.95658 1.20958 0.98343 1.00513 0.99982 1.21137 0.96403 0.97177 0.94326 1.21297 0.94150 1.06482 1.04654 1.19857 0.86934 0.95037 0.91895 1.83935 1.30914 1.54179 1.45181 1.21804 0.97963 1.16848 1.12616 0.88216 1.26625 0.93320 1.00734 1.01408 1.70185 1.00744 1.42430 1.42719 0.84637 0.78380 0.76843 0.76252 1.18287 1.19439 1.17957 1.20198 0.99556 1.03891 0.97709 0.88272 0.90116 0.89605 0.86383 0.86915 0.90369 0.94600 0.75227 0.74905 0.83986 0.86676 0.83516 0.83552 0.86349 0.91830 0.87928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.80 10.32 70.18 0.72 -0.07 16 2 C -0.21 -4.82 14.13 31.13 0.44 -4.38 16 3 C -0.21 -4.60 13.05 31.12 0.41 -4.19 16 4 C 0.00 0.06 4.97 28.79 0.14 0.20 16 5 C 0.15 2.91 2.34 44.99 0.11 3.01 16 6 H 0.07 1.91 7.57 -2.39 -0.02 1.89 16 7 C 0.07 1.13 6.85 71.98 0.49 1.62 16 8 O -0.57 -6.72 12.83 -148.98 -1.91 -8.63 16 9 N -0.71 -14.76 4.72 -442.51 -2.09 -16.85 16 10 C 0.52 14.83 7.79 87.66 0.68 15.51 16 11 O -0.58 -22.74 15.70 -3.04 -0.05 -22.79 16 12 C -0.09 -2.34 5.83 29.10 0.17 -2.17 16 13 C -0.02 -0.89 4.37 -19.88 -0.09 -0.98 16 14 C -0.18 -6.09 9.70 22.30 0.22 -5.87 16 15 C -0.07 -2.70 10.04 22.25 0.22 -2.48 16 16 C -0.25 -11.61 9.17 22.39 0.21 -11.41 16 17 C 0.11 6.09 6.65 22.58 0.15 6.24 16 18 O -0.24 -15.06 9.76 -22.74 -0.22 -15.28 16 19 C -0.42 -25.49 9.49 67.92 0.64 -24.84 16 20 H 0.10 5.61 5.21 -2.91 -0.02 5.60 16 21 C -0.02 -1.40 5.49 84.83 0.47 -0.94 16 22 N -0.92 -58.62 13.67 21.61 0.30 -58.33 16 23 Si 1.02 44.38 29.55 68.60 2.03 46.41 16 24 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 25 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 26 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 27 C -0.19 -9.11 9.65 22.39 0.22 -8.89 16 28 H 0.10 1.23 8.14 -2.38 -0.02 1.21 16 29 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.09 1.33 8.14 -2.39 -0.02 1.32 16 31 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.11 1.44 7.73 -2.38 -0.02 1.43 16 33 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.40 1.49 9.12 -74.06 -0.68 0.81 16 36 H 0.41 6.46 8.60 -92.71 -0.80 5.66 16 37 H 0.14 2.40 8.09 -2.38 -0.02 2.38 16 38 H 0.12 2.59 8.08 -2.39 -0.02 2.57 16 39 H 0.15 3.75 8.06 -2.91 -0.02 3.72 16 40 H 0.15 4.25 8.06 -2.91 -0.02 4.23 16 41 H 0.12 5.60 5.64 -2.91 -0.02 5.58 16 42 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 43 H 0.10 4.86 8.06 -2.91 -0.02 4.83 16 Total: -1.00 -87.48 378.76 2.83 -84.64 By element: Atomic # 1 Polarization: 30.87 SS G_CDS: -0.42 Total: 30.46 kcal Atomic # 6 Polarization: -44.84 SS G_CDS: 5.20 Total: -39.64 kcal Atomic # 7 Polarization: -73.38 SS G_CDS: -1.79 Total: -75.17 kcal Atomic # 8 Polarization: -44.52 SS G_CDS: -2.18 Total: -46.70 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -87.48 2.83 -84.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844113402.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.599 kcal (2) G-P(sol) polarization free energy of solvation -87.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds