Wall clock time and date at job start Tue Mar 31 2020 11:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47210 * 1 3 3 C 1.17391 * 179.97438 * 2 1 4 4 C 1.47208 * 179.97438 * 270.68242 * 3 2 1 5 5 C 1.52999 * 109.47202 * 11.04212 * 4 3 2 6 6 H 1.08994 * 109.47164 * 304.99880 * 5 4 3 7 7 C 1.53000 * 109.46796 * 184.99866 * 5 4 3 8 8 O 1.42894 * 109.47374 * 305.00067 * 7 5 4 9 9 N 1.46503 * 109.47091 * 65.00077 * 5 4 3 10 10 C 1.34768 * 120.00207 * 204.99756 * 9 5 4 11 11 O 1.21283 * 120.00141 * 0.02562 * 10 9 5 12 12 C 1.50699 * 120.00358 * 180.02562 * 10 9 5 13 13 C 1.50701 * 109.47082 * 180.02562 * 12 10 9 14 14 C 1.38307 * 119.92751 * 269.72272 * 13 12 10 15 15 C 1.38105 * 120.06147 * 179.73104 * 14 13 12 16 16 C 1.38872 * 119.93430 * 0.56469 * 15 14 13 17 17 O 1.35750 * 120.06955 * 179.68276 * 16 15 14 18 18 C 1.34838 * 116.99807 * 174.49013 * 17 16 15 19 19 H 1.07994 * 119.99916 * 5.06161 * 18 17 16 20 20 C 1.38659 * 119.99657 * 185.05899 * 18 17 16 21 21 N 1.31560 * 120.00104 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99599 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47048 * 60.00237 * 22 20 18 24 24 H 1.48507 * 109.46707 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47248 * 299.99794 * 22 20 18 26 26 C 1.38887 * 119.86270 * 359.71205 * 16 15 14 27 27 C 1.38093 * 119.92815 * 359.97438 * 26 16 15 28 28 H 1.09003 * 109.46521 * 258.27430 * 1 2 3 29 29 H 1.08992 * 109.46956 * 18.27265 * 1 2 3 30 30 H 1.08994 * 109.46827 * 138.27792 * 1 2 3 31 31 H 1.09000 * 109.46595 * 251.04108 * 4 3 2 32 32 H 1.08995 * 109.46882 * 131.04646 * 4 3 2 33 33 H 1.09004 * 109.46965 * 65.00590 * 7 5 4 34 34 H 1.09002 * 109.46958 * 184.99831 * 7 5 4 35 35 H 0.96701 * 114.00138 * 180.02562 * 8 7 5 36 36 H 0.97000 * 119.99962 * 24.99786 * 9 5 4 37 37 H 1.09004 * 109.47209 * 300.00099 * 12 10 9 38 38 H 1.08996 * 109.47032 * 60.00376 * 12 10 9 39 39 H 1.07994 * 119.96598 * 359.97438 * 14 13 12 40 40 H 1.07999 * 120.02925 * 180.28229 * 15 14 13 41 41 H 0.96992 * 120.00155 * 180.02562 * 21 20 18 42 42 H 1.08003 * 120.03351 * 179.97438 * 26 16 15 43 43 H 1.07999 * 119.96394 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4721 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1181 0.0012 0.0007 5 6 4.6289 -1.4144 -0.2754 6 1 4.1943 -2.1048 0.4474 7 6 6.1536 -1.4395 -0.1517 8 8 6.7180 -0.4514 -1.0160 9 7 4.2421 -1.8176 -1.6297 10 6 4.1160 -3.1246 -1.9335 11 8 4.3223 -3.9669 -1.0857 12 6 3.7188 -3.5394 -3.3267 13 6 3.6485 -5.0429 -3.4024 14 6 4.7699 -5.7689 -3.7606 15 6 4.7102 -7.1471 -3.8254 16 6 3.5196 -7.8033 -3.5418 17 8 3.4561 -9.1575 -3.6109 18 6 2.3054 -9.7374 -3.2135 19 1 1.4593 -9.1254 -2.9383 20 6 2.2087 -11.1195 -3.1584 21 7 3.2396 -11.8650 -3.4933 22 14 0.6144 -11.9229 -2.6086 23 1 -0.4833 -11.5227 -3.5251 24 1 0.7688 -13.3996 -2.6371 25 1 0.2902 -11.4852 -1.2271 26 6 2.3937 -7.0710 -3.1879 27 6 2.4615 -5.6935 -3.1186 28 1 -0.3632 -0.2089 1.0063 29 1 -0.3633 0.9758 -0.3222 30 1 -0.3633 -0.7670 -0.6839 31 1 4.4807 0.3352 0.9728 32 1 4.4814 0.6762 -0.7742 33 1 6.4381 -1.2261 0.8787 34 1 6.5249 -2.4245 -0.4345 35 1 7.6838 -0.4110 -0.9895 36 1 4.0767 -1.1440 -2.3077 37 1 2.7426 -3.1179 -3.5669 38 1 4.4579 -3.1736 -4.0394 39 1 5.6941 -5.2577 -3.9861 40 1 5.5874 -7.7138 -4.1008 41 1 3.1718 -12.8318 -3.4551 42 1 1.4662 -7.5784 -2.9672 43 1 1.5865 -5.1235 -2.8430 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844117662.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:13 Heat of formation + Delta-G solvation = -50.260431 kcal Electronic energy + Delta-G solvation = -25139.124343 eV Core-core repulsion = 21344.192072 eV Total energy + Delta-G solvation = -3794.932270 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -39.98123 -38.85910 -37.60054 -36.38909 -35.51386 -33.92773 -32.45605 -31.84630 -30.82277 -30.08219 -28.76715 -26.50142 -26.03674 -25.05112 -22.07793 -21.89980 -20.73121 -20.05336 -17.96981 -17.91619 -17.26675 -16.85159 -16.69187 -16.05508 -15.35839 -14.82850 -14.60774 -14.49894 -14.35663 -14.11208 -13.97481 -13.78572 -13.60441 -13.50896 -13.41233 -13.25239 -13.11020 -12.63515 -12.47688 -12.14123 -11.84713 -11.73023 -11.43226 -11.20359 -10.78572 -10.69486 -10.58420 -10.42787 -10.39122 -10.00624 -9.90407 -9.60227 -9.26936 -9.08381 -8.76290 -8.08289 -7.09603 -6.39317 -3.97891 2.31437 2.33260 2.48390 2.52034 2.83741 3.15915 3.17034 3.20546 3.25523 3.96039 3.98197 4.01741 4.57015 4.65179 4.85111 5.00704 5.05948 5.11283 5.14758 5.27502 5.29571 5.33457 5.34504 5.37799 5.39782 5.43262 5.51979 5.71624 5.73195 5.79009 5.80372 5.91838 6.28055 6.43481 6.48554 6.77146 6.98314 7.11628 7.28151 7.30479 7.44092 7.44954 7.50636 7.56916 7.90878 8.06084 8.39769 9.06380 9.77487 10.78918 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015839 B = 0.002602 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.343242 B =10757.509490 C =11848.601216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 C -0.187 4.187 3 C -0.191 4.191 4 C -0.006 4.006 5 C 0.155 3.845 6 H 0.102 0.898 7 C 0.063 3.937 8 O -0.571 6.571 9 N -0.726 5.726 10 C 0.511 3.489 11 O -0.524 6.524 12 C -0.080 4.080 13 C -0.168 4.168 14 C -0.060 4.060 15 C -0.192 4.192 16 C 0.156 3.844 17 O -0.179 6.179 18 C -0.391 4.391 19 H 0.091 0.909 20 C 0.039 3.961 21 N -0.865 5.865 22 Si 0.940 3.060 23 H -0.270 1.270 24 H -0.278 1.278 25 H -0.270 1.270 26 C -0.232 4.232 27 C -0.057 4.057 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.379 0.621 36 H 0.400 0.600 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.108 0.892 40 H 0.116 0.884 41 H 0.270 0.730 42 H 0.126 0.874 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.080 25.631 4.933 26.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.187 4.187 3 C -0.191 4.191 4 C -0.043 4.043 5 C 0.049 3.951 6 H 0.120 0.880 7 C -0.016 4.016 8 O -0.376 6.376 9 N -0.379 5.379 10 C 0.298 3.702 11 O -0.399 6.399 12 C -0.120 4.120 13 C -0.169 4.169 14 C -0.078 4.078 15 C -0.211 4.211 16 C 0.103 3.897 17 O -0.082 6.082 18 C -0.467 4.467 19 H 0.108 0.892 20 C -0.165 4.165 21 N -0.500 5.500 22 Si 0.765 3.235 23 H -0.195 1.195 24 H -0.203 1.203 25 H -0.195 1.195 26 C -0.251 4.251 27 C -0.075 4.075 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.100 0.900 31 H 0.115 0.885 32 H 0.117 0.883 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.226 0.774 36 H 0.234 0.766 37 H 0.109 0.891 38 H 0.110 0.890 39 H 0.126 0.874 40 H 0.134 0.866 41 H 0.080 0.920 42 H 0.144 0.856 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 0.807 24.653 5.335 25.237 hybrid contribution -0.318 -0.157 0.230 0.423 sum 0.489 24.496 5.565 25.125 Atomic orbital electron populations 1.18864 0.84752 1.02957 1.03136 1.22413 0.93934 1.00818 1.01495 1.22173 0.93487 1.01853 1.01619 1.18837 0.84523 0.96984 1.03944 1.20949 0.92275 0.95517 0.86332 0.88033 1.22666 0.93721 0.92015 0.93236 1.86422 1.25463 1.58852 1.66864 1.46015 1.71831 1.07756 1.12317 1.21050 0.76433 0.81607 0.91117 1.90735 1.48676 1.50608 1.49863 1.20399 1.02939 0.95290 0.93333 1.18640 0.95036 0.92168 1.11065 1.20395 0.96481 0.92925 0.98012 1.20148 0.96598 0.93660 1.10682 1.19374 0.93102 0.84958 0.92293 1.83977 1.37925 1.13611 1.72721 1.21280 0.89450 0.90184 1.45814 0.89168 1.25277 0.99117 0.95232 0.96894 1.70030 1.29726 1.05635 1.44578 0.85793 0.80159 0.78209 0.79334 1.19533 1.20305 1.19511 1.21100 0.99562 0.93872 1.10607 1.20501 0.96188 0.93825 0.96987 0.90265 0.90311 0.90043 0.88507 0.88349 0.92708 0.92378 0.77377 0.76594 0.89145 0.88985 0.87435 0.86583 0.92037 0.85629 0.87907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.30 10.32 34.37 0.35 0.06 16 2 C -0.19 -1.96 14.13 -37.12 -0.52 -2.48 16 3 C -0.19 -2.00 13.06 -37.12 -0.48 -2.49 16 4 C -0.01 -0.05 4.97 -29.52 -0.15 -0.20 16 5 C 0.15 1.54 2.34 -67.93 -0.16 1.38 16 6 H 0.10 1.23 7.57 -51.93 -0.39 0.83 16 7 C 0.06 0.54 6.85 37.16 0.25 0.79 16 8 O -0.57 -4.28 12.83 -35.23 -0.45 -4.73 16 9 N -0.73 -7.87 4.72 -53.81 -0.25 -8.12 16 10 C 0.51 7.37 7.79 -10.99 -0.09 7.29 16 11 O -0.52 -10.00 15.70 5.55 0.09 -9.91 16 12 C -0.08 -1.06 5.83 -29.03 -0.17 -1.23 16 13 C -0.17 -3.04 4.38 -104.57 -0.46 -3.49 16 14 C -0.06 -1.14 9.69 -39.60 -0.38 -1.52 16 15 C -0.19 -4.29 9.99 -39.40 -0.39 -4.69 16 16 C 0.16 3.97 6.65 -39.11 -0.26 3.72 16 17 O -0.18 -5.29 9.76 0.03 0.00 -5.29 16 18 C -0.39 -11.29 9.49 30.89 0.29 -11.00 16 19 H 0.09 2.42 5.20 -52.49 -0.27 2.14 16 20 C 0.04 1.10 5.49 -17.51 -0.10 1.00 16 21 N -0.86 -25.97 13.67 55.48 0.76 -25.21 16 22 Si 0.94 21.07 29.55 -169.99 -5.02 16.04 16 23 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 24 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 25 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 26 C -0.23 -5.35 9.17 -39.39 -0.36 -5.71 16 27 C -0.06 -1.12 9.69 -39.61 -0.38 -1.50 16 28 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.10 0.74 7.73 -51.93 -0.40 0.34 16 33 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.38 1.41 9.12 45.56 0.42 1.83 16 36 H 0.40 3.50 8.60 -40.82 -0.35 3.15 16 37 H 0.09 1.01 8.08 -51.93 -0.42 0.59 16 38 H 0.09 1.00 8.08 -51.93 -0.42 0.58 16 39 H 0.11 1.73 8.06 -52.49 -0.42 1.30 16 40 H 0.12 2.50 8.06 -52.49 -0.42 2.07 16 41 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 42 H 0.13 2.88 5.64 -52.48 -0.30 2.58 16 43 H 0.10 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 378.75 15.07 5.71 5.71 Total: -1.00 -36.50 378.75 -7.26 -43.76 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -5.08 Total: 7.83 kcal Atomic # 6 Polarization: -17.07 SS G_CDS: -3.00 Total: -20.07 kcal Atomic # 7 Polarization: -33.84 SS G_CDS: 0.50 Total: -33.33 kcal Atomic # 8 Polarization: -19.58 SS G_CDS: -0.36 Total: -19.94 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -36.50 -7.26 -43.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844117662.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.498 kcal (2) G-P(sol) polarization free energy of solvation -36.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds