Wall clock time and date at job start Tue Mar 31 2020 11:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47210 * 1 3 3 C 1.17391 * 179.97438 * 2 1 4 4 C 1.47208 * 179.97438 * 270.68242 * 3 2 1 5 5 C 1.52999 * 109.47202 * 11.04212 * 4 3 2 6 6 H 1.08994 * 109.47164 * 304.99880 * 5 4 3 7 7 C 1.53000 * 109.46796 * 184.99866 * 5 4 3 8 8 O 1.42894 * 109.47374 * 305.00067 * 7 5 4 9 9 N 1.46503 * 109.47091 * 65.00077 * 5 4 3 10 10 C 1.34768 * 120.00207 * 204.99756 * 9 5 4 11 11 O 1.21283 * 120.00141 * 0.02562 * 10 9 5 12 12 C 1.50699 * 120.00358 * 180.02562 * 10 9 5 13 13 C 1.50701 * 109.47082 * 180.02562 * 12 10 9 14 14 C 1.38307 * 119.92751 * 269.72272 * 13 12 10 15 15 C 1.38105 * 120.06147 * 179.73104 * 14 13 12 16 16 C 1.38872 * 119.93430 * 0.56469 * 15 14 13 17 17 O 1.35750 * 120.06955 * 179.68276 * 16 15 14 18 18 C 1.34838 * 116.99807 * 174.49013 * 17 16 15 19 19 H 1.07994 * 119.99916 * 5.06161 * 18 17 16 20 20 C 1.38659 * 119.99657 * 185.05899 * 18 17 16 21 21 N 1.31560 * 120.00104 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99599 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47048 * 60.00237 * 22 20 18 24 24 H 1.48507 * 109.46707 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47248 * 299.99794 * 22 20 18 26 26 C 1.38887 * 119.86270 * 359.71205 * 16 15 14 27 27 C 1.38093 * 119.92815 * 359.97438 * 26 16 15 28 28 H 1.09003 * 109.46521 * 258.27430 * 1 2 3 29 29 H 1.08992 * 109.46956 * 18.27265 * 1 2 3 30 30 H 1.08994 * 109.46827 * 138.27792 * 1 2 3 31 31 H 1.09000 * 109.46595 * 251.04108 * 4 3 2 32 32 H 1.08995 * 109.46882 * 131.04646 * 4 3 2 33 33 H 1.09004 * 109.46965 * 65.00590 * 7 5 4 34 34 H 1.09002 * 109.46958 * 184.99831 * 7 5 4 35 35 H 0.96701 * 114.00138 * 180.02562 * 8 7 5 36 36 H 0.97000 * 119.99962 * 24.99786 * 9 5 4 37 37 H 1.09004 * 109.47209 * 300.00099 * 12 10 9 38 38 H 1.08996 * 109.47032 * 60.00376 * 12 10 9 39 39 H 1.07994 * 119.96598 * 359.97438 * 14 13 12 40 40 H 1.07999 * 120.02925 * 180.28229 * 15 14 13 41 41 H 0.96992 * 120.00155 * 180.02562 * 21 20 18 42 42 H 1.08003 * 120.03351 * 179.97438 * 26 16 15 43 43 H 1.07999 * 119.96394 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4721 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1181 0.0012 0.0007 5 6 4.6289 -1.4144 -0.2754 6 1 4.1943 -2.1048 0.4474 7 6 6.1536 -1.4395 -0.1517 8 8 6.7180 -0.4514 -1.0160 9 7 4.2421 -1.8176 -1.6297 10 6 4.1160 -3.1246 -1.9335 11 8 4.3223 -3.9669 -1.0857 12 6 3.7188 -3.5394 -3.3267 13 6 3.6485 -5.0429 -3.4024 14 6 4.7699 -5.7689 -3.7606 15 6 4.7102 -7.1471 -3.8254 16 6 3.5196 -7.8033 -3.5418 17 8 3.4561 -9.1575 -3.6109 18 6 2.3054 -9.7374 -3.2135 19 1 1.4593 -9.1254 -2.9383 20 6 2.2087 -11.1195 -3.1584 21 7 3.2396 -11.8650 -3.4933 22 14 0.6144 -11.9229 -2.6086 23 1 -0.4833 -11.5227 -3.5251 24 1 0.7688 -13.3996 -2.6371 25 1 0.2902 -11.4852 -1.2271 26 6 2.3937 -7.0710 -3.1879 27 6 2.4615 -5.6935 -3.1186 28 1 -0.3632 -0.2089 1.0063 29 1 -0.3633 0.9758 -0.3222 30 1 -0.3633 -0.7670 -0.6839 31 1 4.4807 0.3352 0.9728 32 1 4.4814 0.6762 -0.7742 33 1 6.4381 -1.2261 0.8787 34 1 6.5249 -2.4245 -0.4345 35 1 7.6838 -0.4110 -0.9895 36 1 4.0767 -1.1440 -2.3077 37 1 2.7426 -3.1179 -3.5669 38 1 4.4579 -3.1736 -4.0394 39 1 5.6941 -5.2577 -3.9861 40 1 5.5874 -7.7138 -4.1008 41 1 3.1718 -12.8318 -3.4551 42 1 1.4662 -7.5784 -2.9672 43 1 1.5865 -5.1235 -2.8430 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844117662.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:13 Heat of formation + Delta-G solvation = -77.094763 kcal Electronic energy + Delta-G solvation = -25140.287967 eV Core-core repulsion = 21344.192072 eV Total energy + Delta-G solvation = -3796.095894 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.18155 -40.51285 -38.64950 -37.93455 -36.25055 -34.74661 -34.40003 -33.11608 -31.95454 -31.76519 -29.51078 -28.08035 -26.93414 -26.67919 -23.64034 -23.20916 -21.93358 -21.28299 -19.84580 -18.88256 -18.66378 -17.99448 -17.66948 -16.91819 -16.59969 -16.34031 -16.11947 -15.84451 -15.51727 -15.34308 -15.15641 -14.95689 -14.77762 -14.52470 -14.40051 -14.32986 -14.13556 -14.00725 -13.73868 -13.60203 -13.01658 -12.94806 -12.70230 -12.51194 -12.44972 -12.31143 -12.24115 -12.14135 -11.18813 -11.10181 -10.90369 -10.77239 -10.60398 -10.57942 -10.03466 -9.76956 -8.90335 -8.47538 -6.15896 0.60871 0.67011 1.33313 1.44609 1.50144 1.73018 1.73579 1.79239 2.17471 2.25755 2.84929 3.17174 3.31643 3.38371 3.52166 3.85549 3.91232 4.04077 4.13044 4.17259 4.22899 4.37029 4.47634 4.52943 4.59068 4.64570 4.70001 4.74261 4.79723 4.80296 4.84016 4.89204 5.02081 5.08960 5.13314 5.14250 5.29994 5.54026 5.56231 5.71073 5.77807 6.02410 6.22223 6.62240 6.74351 6.88839 6.96794 7.36292 7.78011 8.75801 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015839 B = 0.002602 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.343242 B =10757.509490 C =11848.601216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 C -0.207 4.207 3 C -0.213 4.213 4 C 0.003 3.997 5 C 0.151 3.849 6 H 0.077 0.923 7 C 0.072 3.928 8 O -0.575 6.575 9 N -0.708 5.708 10 C 0.512 3.488 11 O -0.580 6.580 12 C -0.078 4.078 13 C -0.144 4.144 14 C -0.057 4.057 15 C -0.206 4.206 16 C 0.112 3.888 17 O -0.233 6.233 18 C -0.416 4.416 19 H 0.099 0.901 20 C -0.023 4.023 21 N -0.922 5.922 22 Si 1.019 2.981 23 H -0.255 1.255 24 H -0.269 1.269 25 H -0.260 1.260 26 C -0.243 4.243 27 C -0.061 4.061 28 H 0.087 0.913 29 H 0.096 0.904 30 H 0.084 0.916 31 H 0.115 0.885 32 H 0.110 0.890 33 H 0.077 0.923 34 H 0.033 0.967 35 H 0.397 0.603 36 H 0.414 0.586 37 H 0.123 0.877 38 H 0.129 0.871 39 H 0.146 0.854 40 H 0.113 0.887 41 H 0.273 0.727 42 H 0.118 0.882 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.304 29.546 5.127 29.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.207 4.207 3 C -0.213 4.213 4 C -0.033 4.033 5 C 0.046 3.954 6 H 0.095 0.905 7 C -0.007 4.007 8 O -0.383 6.383 9 N -0.361 5.361 10 C 0.300 3.700 11 O -0.459 6.459 12 C -0.118 4.118 13 C -0.145 4.145 14 C -0.075 4.075 15 C -0.225 4.225 16 C 0.062 3.938 17 O -0.140 6.140 18 C -0.492 4.492 19 H 0.117 0.883 20 C -0.221 4.221 21 N -0.560 5.560 22 Si 0.838 3.162 23 H -0.179 1.179 24 H -0.194 1.194 25 H -0.184 1.184 26 C -0.263 4.263 27 C -0.079 4.079 28 H 0.105 0.895 29 H 0.114 0.886 30 H 0.103 0.897 31 H 0.133 0.867 32 H 0.128 0.872 33 H 0.095 0.905 34 H 0.051 0.949 35 H 0.247 0.753 36 H 0.250 0.750 37 H 0.141 0.859 38 H 0.147 0.853 39 H 0.164 0.836 40 H 0.131 0.869 41 H 0.082 0.918 42 H 0.135 0.865 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 0.051 28.687 5.509 29.211 hybrid contribution 0.045 -0.949 0.170 0.965 sum 0.096 27.738 5.678 28.313 Atomic orbital electron populations 1.19039 0.83128 1.04103 1.03824 1.23265 0.95218 1.00663 1.01574 1.22769 0.94440 1.02208 1.01846 1.18862 0.83352 0.95753 1.05367 1.21005 0.93354 0.95987 0.85089 0.90534 1.22453 0.92549 0.91127 0.94614 1.86369 1.27258 1.58077 1.66626 1.45868 1.70164 1.06915 1.13132 1.21125 0.75845 0.82180 0.90854 1.90740 1.51535 1.52201 1.51423 1.20514 1.06106 0.91475 0.93669 1.19236 0.93601 0.95201 1.06475 1.20859 0.98519 0.91503 0.96609 1.20439 0.95730 0.95414 1.10902 1.19921 0.95156 0.84180 0.94504 1.83938 1.38722 1.15766 1.75541 1.21788 0.89942 0.91080 1.46391 0.88321 1.26614 1.03366 0.95435 0.96643 1.70180 1.32618 1.06020 1.47178 0.84649 0.75129 0.77128 0.79293 1.17904 1.19384 1.18423 1.21218 0.98604 0.95512 1.10931 1.20905 0.98279 0.92542 0.96182 0.89464 0.88561 0.89700 0.86665 0.87152 0.90540 0.94891 0.75293 0.74959 0.85913 0.85314 0.83603 0.86901 0.91798 0.86472 0.84696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.56 10.32 70.18 0.72 0.17 16 2 C -0.21 -3.95 14.13 31.13 0.44 -3.51 16 3 C -0.21 -3.99 13.06 31.13 0.41 -3.58 16 4 C 0.00 0.04 4.97 28.79 0.14 0.19 16 5 C 0.15 2.68 2.34 44.99 0.11 2.79 16 6 H 0.08 1.79 7.57 -2.39 -0.02 1.77 16 7 C 0.07 1.07 6.85 71.98 0.49 1.56 16 8 O -0.58 -6.70 12.83 -148.98 -1.91 -8.61 16 9 N -0.71 -13.15 4.72 -442.55 -2.09 -15.24 16 10 C 0.51 13.26 7.79 87.66 0.68 13.95 16 11 O -0.58 -21.39 15.70 -3.04 -0.05 -21.44 16 12 C -0.08 -1.72 5.83 29.10 0.17 -1.55 16 13 C -0.14 -4.81 4.38 -19.83 -0.09 -4.90 16 14 C -0.06 -2.07 9.69 22.25 0.22 -1.85 16 15 C -0.21 -9.45 9.99 22.39 0.22 -9.22 16 16 C 0.11 6.00 6.65 22.58 0.15 6.15 16 17 O -0.23 -14.76 9.76 -22.82 -0.22 -14.98 16 18 C -0.42 -25.39 9.49 67.92 0.64 -24.75 16 19 H 0.10 5.56 5.20 -2.91 -0.02 5.55 16 20 C -0.02 -1.38 5.49 84.83 0.47 -0.91 16 21 N -0.92 -58.41 13.67 21.61 0.30 -58.11 16 22 Si 1.02 44.41 29.55 68.60 2.03 46.43 16 23 H -0.25 -10.34 7.11 99.48 0.71 -9.63 16 24 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 25 H -0.26 -10.74 7.11 99.48 0.71 -10.04 16 26 C -0.24 -11.47 9.17 22.39 0.21 -11.27 16 27 C -0.06 -2.30 9.69 22.25 0.22 -2.09 16 28 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.11 1.27 7.73 -2.39 -0.02 1.25 16 33 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.40 1.65 9.12 -74.06 -0.68 0.97 16 36 H 0.41 5.52 8.60 -92.71 -0.80 4.73 16 37 H 0.12 2.03 8.08 -2.38 -0.02 2.01 16 38 H 0.13 2.01 8.08 -2.39 -0.02 1.99 16 39 H 0.15 4.16 8.06 -2.91 -0.02 4.13 16 40 H 0.11 5.10 8.06 -2.91 -0.02 5.08 16 41 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 42 H 0.12 5.58 5.64 -2.91 -0.02 5.57 16 43 H 0.14 4.18 8.06 -2.91 -0.02 4.16 16 Total: -1.00 -86.28 378.75 2.83 -83.45 By element: Atomic # 1 Polarization: 27.74 SS G_CDS: -0.42 Total: 27.33 kcal Atomic # 6 Polarization: -44.03 SS G_CDS: 5.20 Total: -38.83 kcal Atomic # 7 Polarization: -71.56 SS G_CDS: -1.79 Total: -73.35 kcal Atomic # 8 Polarization: -42.85 SS G_CDS: -2.18 Total: -45.03 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.43 kcal Total: -86.28 2.83 -83.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844117662.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.355 kcal (2) G-P(sol) polarization free energy of solvation -86.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds