Wall clock time and date at job start Tue Mar 31 2020 12:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 109.46745 * 2 1 4 4 H 1.09005 * 109.46661 * 174.05992 * 3 2 1 5 5 C 1.50700 * 109.46870 * 54.06390 * 3 2 1 6 6 H 1.07998 * 119.99779 * 239.99022 * 5 3 2 7 7 C 1.37879 * 120.00201 * 60.00156 * 5 3 2 8 8 N 1.31516 * 119.99647 * 359.97438 * 7 5 3 9 9 Si 1.86793 * 120.00006 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47290 * 89.99518 * 9 7 5 11 11 H 1.48500 * 109.47069 * 209.99480 * 9 7 5 12 12 H 1.48499 * 109.47242 * 329.99366 * 9 7 5 13 13 N 1.46895 * 109.47350 * 294.05895 * 3 2 1 14 14 C 1.46895 * 111.00161 * 275.51984 * 13 3 2 15 15 C 1.53005 * 109.46872 * 176.73330 * 14 13 3 16 16 H 1.08997 * 109.47347 * 59.99830 * 15 14 13 17 17 O 1.42896 * 109.46924 * 299.99261 * 15 14 13 18 18 C 1.50703 * 109.46782 * 179.97438 * 15 14 13 19 19 C 1.38237 * 120.00144 * 84.72673 * 18 15 14 20 20 C 1.38231 * 120.00024 * 179.76637 * 19 18 15 21 21 C 1.38237 * 119.99853 * 0.49923 * 20 19 18 22 22 C 1.50705 * 120.00106 * 179.72414 * 21 20 19 23 23 F 1.39895 * 109.47123 * 270.03115 * 22 21 20 24 24 F 1.39899 * 109.46763 * 30.02706 * 22 21 20 25 25 F 1.39895 * 109.46726 * 150.02648 * 22 21 20 26 26 C 1.38237 * 120.00023 * 359.75244 * 21 20 19 27 27 C 1.38233 * 119.99763 * 264.99643 * 18 15 14 28 28 H 1.08996 * 109.47501 * 298.59994 * 1 2 3 29 29 H 1.09003 * 109.47488 * 178.59486 * 1 2 3 30 30 H 1.09007 * 109.47304 * 58.60094 * 1 2 3 31 31 H 1.08994 * 109.46751 * 120.00053 * 2 1 3 32 32 H 1.08996 * 109.46988 * 240.00087 * 2 1 3 33 33 H 0.97006 * 119.99872 * 180.02562 * 8 7 5 34 34 H 1.00903 * 110.99992 * 39.47336 * 13 3 2 35 35 H 1.09005 * 109.47061 * 296.72600 * 14 13 3 36 36 H 1.08997 * 109.47274 * 56.73116 * 14 13 3 37 37 H 0.96703 * 114.00647 * 300.00613 * 17 15 14 38 38 H 1.07998 * 119.99738 * 359.97438 * 19 18 15 39 39 H 1.07998 * 120.00068 * 180.23314 * 20 19 18 40 40 H 1.08001 * 120.00004 * 179.97438 * 26 21 20 41 41 H 1.07998 * 120.00202 * 359.97438 * 27 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1247 1.4444 0.1064 5 6 1.4211 2.1941 1.1504 6 1 0.8144 3.0672 0.9610 7 6 1.6297 1.7670 2.4447 8 7 2.3684 0.7036 2.6752 9 14 0.8633 2.6989 3.8706 10 1 -0.4792 2.1366 4.1651 11 1 1.7289 2.5676 5.0701 12 1 0.7309 4.1335 3.5104 13 7 1.6708 2.0925 -1.2646 14 6 2.6553 1.7987 -2.3145 15 6 2.1959 2.4232 -3.6336 16 1 2.1050 3.5026 -3.5124 17 8 0.9282 1.8769 -4.0031 18 6 3.2063 2.1223 -4.7105 19 6 3.1444 0.9268 -5.4018 20 6 4.0683 0.6529 -6.3929 21 6 5.0602 1.5701 -6.6857 22 6 6.0712 1.2689 -7.7619 23 9 7.1699 0.6110 -7.1988 24 9 5.4867 0.4513 -8.7351 25 9 6.4954 2.4648 -8.3510 26 6 5.1252 2.7634 -5.9908 27 6 4.1982 3.0395 -5.0032 28 1 -0.3634 0.4919 0.9022 29 1 -0.3634 -1.0274 -0.0252 30 1 -0.3634 0.5354 -0.8772 31 1 1.8932 -0.5138 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 2.5149 0.4029 3.5858 34 1 0.7427 1.8213 -1.5531 35 1 3.6223 2.2154 -2.0326 36 1 2.7462 0.7193 -2.4356 37 1 0.9345 0.9180 -4.1282 38 1 2.3723 0.2083 -5.1698 39 1 4.0177 -0.2794 -6.9356 40 1 5.9005 3.4798 -6.2192 41 1 4.2490 3.9718 -4.4604 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000846980830.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:45 Heat of formation + Delta-G solvation = -183.628795 kcal Electronic energy + Delta-G solvation = -26334.378286 eV Core-core repulsion = 21991.805989 eV Total energy + Delta-G solvation = -4342.572297 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.41367 -47.93729 -47.86924 -40.07823 -37.62482 -35.92866 -32.85398 -32.27367 -31.38079 -30.67031 -28.20497 -26.42114 -24.97890 -23.32295 -23.24859 -22.49129 -21.07677 -19.35459 -18.81856 -18.72355 -18.62552 -17.23927 -16.36347 -16.03243 -15.36419 -15.04316 -14.89370 -14.74712 -14.63970 -14.44943 -14.34589 -14.15437 -14.03717 -13.96299 -13.69057 -13.58210 -13.29416 -13.07518 -12.62168 -12.45713 -11.99509 -11.93476 -11.74168 -11.46390 -11.09079 -10.96324 -10.79746 -10.56087 -10.26641 -10.02995 -9.79243 -9.58836 -9.35301 -9.23578 -8.95884 -8.37193 -7.28127 -6.00072 -4.01595 0.61647 0.98540 2.40108 3.16830 3.31071 3.38138 3.42525 3.45376 3.75885 4.16627 4.33310 4.39079 4.47125 4.51682 4.55124 4.98419 5.06725 5.25355 5.29638 5.31964 5.41416 5.54688 5.65148 5.86186 5.89220 5.99925 6.11904 6.30510 6.31227 6.36964 6.46381 6.53800 6.85125 7.22070 7.24416 7.47176 7.57799 7.66105 7.86043 8.24232 8.51582 8.58463 9.04276 9.62294 11.07097 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.025705 B = 0.002504 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.999833 B =11180.238282 C =11345.169712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.145 4.145 3 C 0.215 3.785 4 H 0.031 0.969 5 C -0.489 4.489 6 H 0.062 0.938 7 C 0.057 3.943 8 N -0.897 5.897 9 Si 0.894 3.106 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.274 1.274 13 N -0.680 5.680 14 C 0.036 3.964 15 C 0.142 3.858 16 H 0.120 0.880 17 O -0.549 6.549 18 C -0.072 4.072 19 C -0.114 4.114 20 C -0.067 4.067 21 C -0.191 4.191 22 C 0.509 3.491 23 F -0.177 7.177 24 F -0.179 7.179 25 F -0.178 7.178 26 C -0.068 4.068 27 C -0.110 4.110 28 H 0.066 0.934 29 H 0.022 0.978 30 H 0.031 0.969 31 H 0.092 0.908 32 H 0.008 0.992 33 H 0.259 0.741 34 H 0.334 0.666 35 H 0.074 0.926 36 H 0.023 0.977 37 H 0.369 0.631 38 H 0.133 0.867 39 H 0.135 0.865 40 H 0.136 0.864 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.061 -0.168 -20.020 20.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.184 4.184 3 C 0.108 3.892 4 H 0.049 0.951 5 C -0.528 4.528 6 H 0.080 0.920 7 C -0.144 4.144 8 N -0.536 5.536 9 Si 0.722 3.278 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.199 1.199 13 N -0.312 5.312 14 C -0.095 4.095 15 C 0.082 3.918 16 H 0.137 0.863 17 O -0.354 6.354 18 C -0.073 4.073 19 C -0.132 4.132 20 C -0.085 4.085 21 C -0.193 4.193 22 C 0.455 3.545 23 F -0.158 7.158 24 F -0.160 7.160 25 F -0.160 7.160 26 C -0.086 4.086 27 C -0.128 4.128 28 H 0.085 0.915 29 H 0.041 0.959 30 H 0.050 0.950 31 H 0.110 0.890 32 H 0.027 0.973 33 H 0.069 0.931 34 H 0.154 0.846 35 H 0.093 0.907 36 H 0.041 0.959 37 H 0.217 0.783 38 H 0.150 0.850 39 H 0.153 0.847 40 H 0.154 0.846 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 5.268 0.956 -19.676 20.391 hybrid contribution -0.036 -1.267 0.396 1.328 sum 5.231 -0.312 -19.280 19.979 Atomic orbital electron populations 1.21570 0.97545 0.98005 1.01432 1.22100 0.95136 1.01111 1.00070 1.19211 0.95994 0.88664 0.85346 0.95080 1.21055 1.30465 1.11572 0.89692 0.91975 1.24915 0.95541 0.95195 0.98733 1.69885 1.39233 1.24173 1.20346 0.86563 0.78976 0.80396 0.81880 1.20841 1.21444 1.19877 1.60811 1.04191 1.63208 1.03019 1.22530 0.98289 0.97262 0.91391 1.21132 0.80803 1.00138 0.89689 0.86269 1.86663 1.30970 1.26303 1.91462 1.21022 0.96237 0.93814 0.96195 1.20895 0.99294 0.96978 0.96065 1.20873 0.92804 0.98328 0.96512 1.19938 0.99227 0.99245 1.00860 1.18320 0.80616 0.74163 0.81373 1.93232 1.56228 1.81463 1.84900 1.93184 1.84026 1.73508 1.65283 1.93184 1.90970 1.46388 1.85428 1.20932 0.98520 0.94902 0.94243 1.21055 0.94291 1.00129 0.97304 0.91512 0.95933 0.94972 0.88979 0.97301 0.93113 0.84607 0.90738 0.95896 0.78319 0.84951 0.84708 0.84615 0.84276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.65 9.39 37.16 0.35 -2.30 16 2 C -0.14 -3.26 5.50 -26.73 -0.15 -3.41 16 3 C 0.22 5.13 2.33 -68.86 -0.16 4.97 16 4 H 0.03 0.83 7.85 -51.93 -0.41 0.42 16 5 C -0.49 -12.94 7.35 -34.44 -0.25 -13.19 16 6 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 7 C 0.06 1.52 5.22 -17.82 -0.09 1.43 16 8 N -0.90 -24.88 11.39 55.43 0.63 -24.25 16 9 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 13 N -0.68 -13.53 6.25 -107.95 -0.67 -14.21 16 14 C 0.04 0.57 5.17 -3.82 -0.02 0.55 16 15 C 0.14 1.81 3.48 -27.88 -0.10 1.72 16 16 H 0.12 1.57 8.05 -51.93 -0.42 1.15 16 17 O -0.55 -7.08 12.42 -35.23 -0.44 -7.52 16 18 C -0.07 -0.79 5.00 -104.62 -0.52 -1.31 16 19 C -0.11 -1.13 9.33 -39.58 -0.37 -1.50 16 20 C -0.07 -0.64 9.40 -39.58 -0.37 -1.02 16 21 C -0.19 -1.93 5.45 -104.62 -0.57 -2.50 16 22 C 0.51 5.09 3.36 36.01 0.12 5.21 16 23 F -0.18 -1.90 17.30 2.25 0.04 -1.87 16 24 F -0.18 -1.80 16.46 2.25 0.04 -1.76 16 25 F -0.18 -1.79 16.46 2.25 0.04 -1.75 16 26 C -0.07 -0.65 9.40 -39.58 -0.37 -1.03 16 27 C -0.11 -1.11 9.68 -39.58 -0.38 -1.49 16 28 H 0.07 1.54 7.04 -51.93 -0.37 1.17 16 29 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.03 0.60 6.43 -51.93 -0.33 0.27 16 31 H 0.09 2.36 6.25 -51.93 -0.32 2.03 16 32 H 0.01 0.17 7.26 -51.93 -0.38 -0.20 16 33 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 34 H 0.33 6.50 5.91 -39.29 -0.23 6.27 16 35 H 0.07 1.23 8.12 -51.93 -0.42 0.81 16 36 H 0.02 0.37 7.26 -51.93 -0.38 -0.01 16 37 H 0.37 3.63 7.40 45.56 0.34 3.97 16 38 H 0.13 1.06 6.62 -52.49 -0.35 0.71 16 39 H 0.14 1.06 7.60 -52.49 -0.40 0.66 16 40 H 0.14 1.06 7.60 -52.49 -0.40 0.66 16 41 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 346.94 15.07 5.23 5.23 Total: -1.00 -28.55 346.94 -7.51 -36.06 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -4.46 Total: 7.91 kcal Atomic # 6 Polarization: -10.98 SS G_CDS: -2.89 Total: -13.88 kcal Atomic # 7 Polarization: -38.41 SS G_CDS: -0.04 Total: -38.45 kcal Atomic # 8 Polarization: -7.08 SS G_CDS: -0.44 Total: -7.52 kcal Atomic # 9 Polarization: -5.49 SS G_CDS: 0.11 Total: -5.38 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -28.55 -7.51 -36.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846980830.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.566 kcal (2) G-P(sol) polarization free energy of solvation -28.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds