Wall clock time and date at job start Tue Mar 31 2020 12:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47016 * 2 1 4 4 H 1.09005 * 109.47156 * 306.02810 * 3 2 1 5 5 C 1.50704 * 109.46946 * 186.02986 * 3 2 1 6 6 H 1.07997 * 119.99773 * 243.90475 * 5 3 2 7 7 C 1.37881 * 119.99943 * 63.91044 * 5 3 2 8 8 N 1.31513 * 119.99697 * 197.17964 * 7 5 3 9 9 Si 1.86798 * 120.00056 * 17.17982 * 7 5 3 10 10 H 1.48501 * 109.47224 * 86.28634 * 9 7 5 11 11 H 1.48492 * 109.47280 * 206.28627 * 9 7 5 12 12 H 1.48505 * 109.47130 * 326.28680 * 9 7 5 13 13 N 1.46901 * 109.47626 * 66.02866 * 3 2 1 14 14 C 1.46898 * 111.00231 * 251.14326 * 13 3 2 15 15 C 1.50704 * 109.47160 * 184.30277 * 14 13 3 16 16 C 1.35847 * 120.90274 * 259.72238 * 15 14 13 17 17 C 1.40999 * 119.82605 * 179.78373 * 16 15 14 18 18 O 1.21798 * 119.15822 * 180.23019 * 17 16 15 19 19 O 1.34221 * 121.68302 * 0.47905 * 17 16 15 20 20 C 1.35017 * 121.46782 * 359.77594 * 19 17 16 21 21 C 1.38686 * 120.73194 * 179.97438 * 20 19 17 22 22 C 1.50699 * 120.10226 * 0.02845 * 21 20 19 23 23 C 1.38516 * 119.78846 * 180.02562 * 21 20 19 24 24 O 1.35738 * 119.72888 * 180.02562 * 23 21 20 25 25 C 1.39373 * 120.53941 * 359.97438 * 23 21 20 26 26 C 1.36461 * 120.43381 * 0.02562 * 25 23 21 27 27 C 1.39970 * 119.79707 * 359.97438 * 26 25 23 28 28 H 1.08994 * 109.47162 * 175.84008 * 1 2 3 29 29 H 1.09007 * 109.46727 * 55.84457 * 1 2 3 30 30 H 1.08998 * 109.47473 * 295.84583 * 1 2 3 31 31 H 1.09005 * 109.47015 * 119.99303 * 2 1 3 32 32 H 1.08994 * 109.47256 * 239.99811 * 2 1 3 33 33 H 0.97004 * 119.99494 * 179.97438 * 8 7 5 34 34 H 1.00900 * 110.99750 * 127.18683 * 13 3 2 35 35 H 1.08995 * 109.47157 * 304.30860 * 14 13 3 36 36 H 1.09002 * 109.46767 * 64.30328 * 14 13 3 37 37 H 1.07999 * 120.08913 * 359.97438 * 16 15 14 38 38 H 1.09001 * 109.47114 * 270.01853 * 22 21 20 39 39 H 1.09000 * 109.47307 * 30.02827 * 22 21 20 40 40 H 1.09004 * 109.46615 * 150.01946 * 22 21 20 41 41 H 0.96710 * 113.99962 * 269.97560 * 24 23 21 42 42 H 1.07991 * 119.78262 * 180.02562 * 25 23 21 43 43 H 1.07994 * 120.10311 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5912 1.9866 -0.8311 5 6 3.5396 1.4451 -0.1493 6 1 4.1608 1.8278 0.6470 7 6 4.1185 0.9590 -1.3024 8 7 5.3952 0.6437 -1.3148 9 14 3.0893 0.7484 -2.8470 10 1 3.0619 2.0270 -3.6018 11 1 3.6832 -0.3151 -3.6963 12 1 1.7046 0.3658 -2.4708 13 7 1.6727 2.0918 1.2655 14 6 0.6189 3.0938 1.0568 15 6 0.3436 3.8109 2.3533 16 6 -0.7247 3.4760 3.1226 17 6 -0.9583 4.1588 4.3339 18 8 -1.9174 3.8458 5.0162 19 8 -0.1535 5.1483 4.7519 20 6 0.9220 5.5336 4.0323 21 6 1.7431 6.5583 4.4783 22 6 1.4417 7.2564 5.7794 23 6 2.8412 6.9381 3.7241 24 8 3.6443 7.9409 4.1621 25 6 3.1287 6.2982 2.5198 26 6 2.3312 5.2880 2.0662 27 6 1.2175 4.8913 2.8154 28 1 -0.3633 -1.0249 -0.0745 29 1 -0.3633 0.5770 -0.8505 30 1 -0.3634 0.4480 0.9248 31 1 1.8933 -0.5138 0.8901 32 1 1.8933 -0.5138 -0.8899 33 1 5.8023 0.3014 -2.1260 34 1 2.4805 2.5035 1.7084 35 1 0.9453 3.8132 0.3058 36 1 -0.2902 2.5990 0.7150 37 1 -1.3917 2.6866 2.8088 38 1 0.7879 8.1081 5.5918 39 1 0.9476 6.5616 6.4586 40 1 2.3717 7.6043 6.2290 41 1 3.3780 8.8195 3.8580 42 1 3.9881 6.6039 1.9418 43 1 2.5587 4.7962 1.1321 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000846985636.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:57 Heat of formation + Delta-G solvation = -75.500832 kcal Electronic energy + Delta-G solvation = -26636.751034 eV Core-core repulsion = 22840.724257 eV Total energy + Delta-G solvation = -3796.026776 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.02584 -39.76004 -37.90202 -37.51294 -36.21494 -34.79471 -32.68552 -32.26216 -31.27603 -29.41305 -28.08770 -27.14561 -25.40222 -24.42303 -22.86148 -22.41600 -21.18936 -20.04579 -19.80003 -18.06170 -17.74029 -17.55996 -17.02290 -16.79860 -15.65413 -15.45268 -15.38868 -14.88451 -14.41985 -14.07099 -13.98082 -13.80832 -13.50621 -13.47279 -12.99743 -12.80922 -12.68657 -12.55538 -12.36372 -12.24414 -12.10352 -11.85759 -11.71756 -11.42233 -10.95478 -10.92722 -10.91328 -10.58752 -10.21635 -10.18533 -9.92103 -9.50156 -9.31826 -8.82624 -8.54659 -8.39652 -7.71880 -6.27115 -4.23552 0.07708 0.85867 1.34670 2.28388 2.70819 3.17167 3.27865 3.29924 3.44832 3.83112 4.05699 4.16962 4.28189 4.30681 4.61214 4.75747 4.97271 4.99681 5.05917 5.18634 5.31320 5.37609 5.42969 5.47192 5.68004 5.73790 5.85804 5.91972 5.99113 6.00099 6.00937 6.05377 6.18053 6.24186 6.26805 6.51074 6.68862 6.91170 6.94214 7.11050 7.25412 7.30727 7.42979 7.47579 7.74877 8.09714 8.39431 8.79756 9.38297 10.85280 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013981 B = 0.004139 C = 0.003331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.196662 B = 6763.736304 C = 8405.029704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.109 4.109 3 C 0.192 3.808 4 H 0.011 0.989 5 C -0.545 4.545 6 H 0.076 0.924 7 C 0.083 3.917 8 N -0.884 5.884 9 Si 0.861 3.139 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.250 1.250 13 N -0.671 5.671 14 C 0.083 3.917 15 C 0.048 3.952 16 C -0.247 4.247 17 C 0.513 3.487 18 O -0.473 6.473 19 O -0.271 6.271 20 C 0.159 3.841 21 C -0.132 4.132 22 C -0.106 4.106 23 C 0.156 3.844 24 O -0.488 6.488 25 C -0.157 4.157 26 C -0.039 4.039 27 C -0.151 4.151 28 H 0.036 0.964 29 H 0.037 0.963 30 H 0.054 0.946 31 H 0.059 0.941 32 H 0.053 0.947 33 H 0.265 0.735 34 H 0.342 0.658 35 H 0.049 0.951 36 H 0.089 0.911 37 H 0.164 0.836 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.395 0.605 42 H 0.143 0.857 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.650 14.044 6.560 17.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.148 4.148 3 C 0.084 3.916 4 H 0.029 0.971 5 C -0.582 4.582 6 H 0.094 0.906 7 C -0.122 4.122 8 N -0.519 5.519 9 Si 0.688 3.312 10 H -0.206 1.206 11 H -0.213 1.213 12 H -0.174 1.174 13 N -0.303 5.303 14 C -0.046 4.046 15 C 0.047 3.953 16 C -0.267 4.267 17 C 0.363 3.637 18 O -0.361 6.361 19 O -0.183 6.183 20 C 0.113 3.887 21 C -0.133 4.133 22 C -0.163 4.163 23 C 0.111 3.889 24 O -0.299 6.299 25 C -0.176 4.176 26 C -0.057 4.057 27 C -0.152 4.152 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.161 0.839 35 H 0.067 0.933 36 H 0.107 0.893 37 H 0.181 0.819 38 H 0.089 0.911 39 H 0.093 0.907 40 H 0.096 0.904 41 H 0.253 0.747 42 H 0.160 0.840 43 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -8.124 12.952 7.406 16.989 hybrid contribution -0.010 0.722 -1.771 1.912 sum -8.134 13.674 5.635 16.879 Atomic orbital electron populations 1.21840 0.98501 0.99664 1.00565 1.21865 0.92803 0.99037 1.01080 1.19523 0.95582 0.91051 0.85453 0.97148 1.21248 0.89330 1.43928 1.03739 0.90631 1.24882 0.94741 0.93693 0.98841 1.69997 1.12207 1.41432 1.28308 0.87249 0.82272 0.78112 0.83610 1.20576 1.21302 1.17412 1.60780 1.13038 1.29347 1.27183 1.21228 0.99059 0.93871 0.90453 1.21699 0.89634 0.88979 0.95035 1.22377 1.02943 1.05669 0.95753 1.19239 0.80930 0.77132 0.86385 1.90965 1.25628 1.61589 1.57951 1.83496 1.34403 1.49962 1.50404 1.18563 0.86255 0.94284 0.89550 1.19491 0.95032 0.98533 1.00289 1.20572 1.02657 1.00113 0.92946 1.18111 0.88315 0.91221 0.91275 1.84755 1.52136 1.17663 1.75334 1.21205 1.01653 0.98685 0.96039 1.20955 0.91128 0.94294 0.99276 1.19119 0.99817 1.00079 0.96169 0.94530 0.94403 0.92686 0.92203 0.92891 0.92465 0.83853 0.93279 0.89316 0.81867 0.91073 0.90734 0.90402 0.74738 0.83965 0.83324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 9.13 37.16 0.34 -2.19 16 2 C -0.11 -2.25 4.91 -26.73 -0.13 -2.38 16 3 C 0.19 4.04 1.73 -68.86 -0.12 3.92 16 4 H 0.01 0.23 6.25 -51.93 -0.32 -0.10 16 5 C -0.54 -13.80 9.02 -34.44 -0.31 -14.11 16 6 H 0.08 2.08 7.61 -52.49 -0.40 1.68 16 7 C 0.08 2.20 5.30 -17.82 -0.09 2.11 16 8 N -0.88 -25.30 13.96 55.43 0.77 -24.53 16 9 Si 0.86 19.70 25.83 -169.99 -4.39 15.31 16 10 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 11 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.25 -5.38 5.57 56.52 0.31 -5.06 16 13 N -0.67 -11.99 6.04 -109.22 -0.66 -12.65 16 14 C 0.08 1.20 4.71 -4.98 -0.02 1.17 16 15 C 0.05 0.65 5.54 -102.18 -0.57 0.09 16 16 C -0.25 -3.42 9.58 -39.39 -0.38 -3.79 16 17 C 0.51 7.93 7.89 31.78 0.25 8.18 16 18 O -0.47 -8.49 17.91 -19.60 -0.35 -8.84 16 19 O -0.27 -3.95 8.92 -20.77 -0.19 -4.13 16 20 C 0.16 2.09 6.73 -38.47 -0.26 1.83 16 21 C -0.13 -1.49 5.90 -104.35 -0.62 -2.11 16 22 C -0.11 -0.99 9.58 36.00 0.34 -0.64 16 23 C 0.16 1.61 6.68 -39.06 -0.26 1.35 16 24 O -0.49 -4.06 12.50 -18.92 -0.24 -4.30 16 25 C -0.16 -1.69 9.91 -39.80 -0.39 -2.09 16 26 C -0.04 -0.47 9.00 -39.57 -0.36 -0.82 16 27 C -0.15 -1.98 5.87 -105.01 -0.62 -2.60 16 28 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.88 7.10 -51.93 -0.37 0.51 16 31 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.05 1.16 4.95 -51.93 -0.26 0.90 16 33 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 34 H 0.34 6.30 7.26 -39.29 -0.29 6.01 16 35 H 0.05 0.68 7.07 -51.93 -0.37 0.32 16 36 H 0.09 1.22 6.78 -51.93 -0.35 0.87 16 37 H 0.16 2.06 8.05 -52.49 -0.42 1.64 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.76 7.57 -51.93 -0.39 0.36 16 40 H 0.08 0.65 7.52 -51.93 -0.39 0.26 16 41 H 0.40 1.29 9.06 45.56 0.41 1.70 16 42 H 0.14 1.32 8.06 -52.49 -0.42 0.89 16 43 H 0.15 1.85 6.65 -52.49 -0.35 1.50 16 LS Contribution 351.24 15.07 5.29 5.29 Total: -1.00 -30.73 351.24 -7.78 -38.51 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -4.83 Total: 7.42 kcal Atomic # 6 Polarization: -8.89 SS G_CDS: -3.19 Total: -12.09 kcal Atomic # 7 Polarization: -37.29 SS G_CDS: 0.11 Total: -37.18 kcal Atomic # 8 Polarization: -16.50 SS G_CDS: -0.77 Total: -17.27 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -4.39 Total: 15.31 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.73 -7.78 -38.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846985636.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.988 kcal (2) G-P(sol) polarization free energy of solvation -30.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds