Wall clock time and date at job start Tue Mar 31 2020 12:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47016 * 2 1 4 4 H 1.09005 * 109.47156 * 306.02810 * 3 2 1 5 5 C 1.50704 * 109.46946 * 186.02986 * 3 2 1 6 6 H 1.07997 * 119.99773 * 243.90475 * 5 3 2 7 7 C 1.37881 * 119.99943 * 63.91044 * 5 3 2 8 8 N 1.31513 * 119.99697 * 197.17964 * 7 5 3 9 9 Si 1.86798 * 120.00056 * 17.17982 * 7 5 3 10 10 H 1.48501 * 109.47224 * 86.28634 * 9 7 5 11 11 H 1.48492 * 109.47280 * 206.28627 * 9 7 5 12 12 H 1.48505 * 109.47130 * 326.28680 * 9 7 5 13 13 N 1.46901 * 109.47626 * 66.02866 * 3 2 1 14 14 C 1.46898 * 111.00231 * 251.14326 * 13 3 2 15 15 C 1.50704 * 109.47160 * 184.30277 * 14 13 3 16 16 C 1.35847 * 120.90274 * 259.72238 * 15 14 13 17 17 C 1.40999 * 119.82605 * 179.78373 * 16 15 14 18 18 O 1.21798 * 119.15822 * 180.23019 * 17 16 15 19 19 O 1.34221 * 121.68302 * 0.47905 * 17 16 15 20 20 C 1.35017 * 121.46782 * 359.77594 * 19 17 16 21 21 C 1.38686 * 120.73194 * 179.97438 * 20 19 17 22 22 C 1.50699 * 120.10226 * 0.02845 * 21 20 19 23 23 C 1.38516 * 119.78846 * 180.02562 * 21 20 19 24 24 O 1.35738 * 119.72888 * 180.02562 * 23 21 20 25 25 C 1.39373 * 120.53941 * 359.97438 * 23 21 20 26 26 C 1.36461 * 120.43381 * 0.02562 * 25 23 21 27 27 C 1.39970 * 119.79707 * 359.97438 * 26 25 23 28 28 H 1.08994 * 109.47162 * 175.84008 * 1 2 3 29 29 H 1.09007 * 109.46727 * 55.84457 * 1 2 3 30 30 H 1.08998 * 109.47473 * 295.84583 * 1 2 3 31 31 H 1.09005 * 109.47015 * 119.99303 * 2 1 3 32 32 H 1.08994 * 109.47256 * 239.99811 * 2 1 3 33 33 H 0.97004 * 119.99494 * 179.97438 * 8 7 5 34 34 H 1.00900 * 110.99750 * 127.18683 * 13 3 2 35 35 H 1.08995 * 109.47157 * 304.30860 * 14 13 3 36 36 H 1.09002 * 109.46767 * 64.30328 * 14 13 3 37 37 H 1.07999 * 120.08913 * 359.97438 * 16 15 14 38 38 H 1.09001 * 109.47114 * 270.01853 * 22 21 20 39 39 H 1.09000 * 109.47307 * 30.02827 * 22 21 20 40 40 H 1.09004 * 109.46615 * 150.01946 * 22 21 20 41 41 H 0.96710 * 113.99962 * 269.97560 * 24 23 21 42 42 H 1.07991 * 119.78262 * 180.02562 * 25 23 21 43 43 H 1.07994 * 120.10311 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5912 1.9866 -0.8311 5 6 3.5396 1.4451 -0.1493 6 1 4.1608 1.8278 0.6470 7 6 4.1185 0.9590 -1.3024 8 7 5.3952 0.6437 -1.3148 9 14 3.0893 0.7484 -2.8470 10 1 3.0619 2.0270 -3.6018 11 1 3.6832 -0.3151 -3.6963 12 1 1.7046 0.3658 -2.4708 13 7 1.6727 2.0918 1.2655 14 6 0.6189 3.0938 1.0568 15 6 0.3436 3.8109 2.3533 16 6 -0.7247 3.4760 3.1226 17 6 -0.9583 4.1588 4.3339 18 8 -1.9174 3.8458 5.0162 19 8 -0.1535 5.1483 4.7519 20 6 0.9220 5.5336 4.0323 21 6 1.7431 6.5583 4.4783 22 6 1.4417 7.2564 5.7794 23 6 2.8412 6.9381 3.7241 24 8 3.6443 7.9409 4.1621 25 6 3.1287 6.2982 2.5198 26 6 2.3312 5.2880 2.0662 27 6 1.2175 4.8913 2.8154 28 1 -0.3633 -1.0249 -0.0745 29 1 -0.3633 0.5770 -0.8505 30 1 -0.3634 0.4480 0.9248 31 1 1.8933 -0.5138 0.8901 32 1 1.8933 -0.5138 -0.8899 33 1 5.8023 0.3014 -2.1260 34 1 2.4805 2.5035 1.7084 35 1 0.9453 3.8132 0.3058 36 1 -0.2902 2.5990 0.7150 37 1 -1.3917 2.6866 2.8088 38 1 0.7879 8.1081 5.5918 39 1 0.9476 6.5616 6.4586 40 1 2.3717 7.6043 6.2290 41 1 3.3780 8.8195 3.8580 42 1 3.9881 6.6039 1.9418 43 1 2.5587 4.7962 1.1321 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000846985636.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:56 Heat of formation + Delta-G solvation = -95.938074 kcal Electronic energy + Delta-G solvation = -26637.637259 eV Core-core repulsion = 22840.724257 eV Total energy + Delta-G solvation = -3796.913002 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.09378 -40.68893 -38.99062 -38.80664 -37.36054 -35.96818 -34.23793 -33.49804 -32.67800 -30.38072 -29.62283 -28.07547 -26.83096 -25.42282 -24.32375 -23.63632 -22.22290 -21.44622 -20.97562 -19.29799 -18.79941 -18.63838 -18.45377 -17.93152 -17.09640 -16.69507 -16.27374 -15.97856 -15.82897 -15.54902 -15.17159 -14.86049 -14.76165 -14.54438 -14.45751 -14.09868 -13.77521 -13.72683 -13.45563 -13.43398 -13.15696 -13.04671 -13.03006 -12.69860 -12.56522 -12.52254 -12.10043 -11.73443 -11.69437 -11.41234 -11.32560 -11.12518 -11.06908 -10.53460 -9.75023 -9.38178 -9.17642 -8.31171 -6.30464 -0.93257 -0.11264 0.34846 1.22203 1.36990 1.42035 1.50009 1.66321 2.36812 2.46652 2.93448 3.03181 3.07120 3.18328 3.32018 3.65983 3.77096 3.80907 4.03407 4.15075 4.29733 4.47975 4.50210 4.57206 4.58085 4.63315 4.67724 4.72543 4.76712 4.88071 4.93435 5.00009 5.15419 5.17806 5.23794 5.26564 5.32238 5.43432 5.44026 5.56595 5.81687 5.99774 6.00706 6.28804 6.40658 6.60791 6.73691 6.83185 7.35206 8.84682 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013981 B = 0.004139 C = 0.003331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.196662 B = 6763.736304 C = 8405.029704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.112 4.112 3 C 0.199 3.801 4 H 0.020 0.980 5 C -0.541 4.541 6 H 0.040 0.960 7 C 0.028 3.972 8 N -0.936 5.936 9 Si 0.921 3.079 10 H -0.273 1.273 11 H -0.294 1.294 12 H -0.224 1.224 13 N -0.673 5.673 14 C 0.085 3.915 15 C 0.058 3.942 16 C -0.250 4.250 17 C 0.512 3.488 18 O -0.508 6.508 19 O -0.276 6.276 20 C 0.142 3.858 21 C -0.137 4.137 22 C -0.104 4.104 23 C 0.172 3.828 24 O -0.490 6.490 25 C -0.156 4.156 26 C -0.045 4.045 27 C -0.164 4.164 28 H 0.051 0.949 29 H 0.049 0.951 30 H 0.064 0.936 31 H 0.043 0.957 32 H 0.038 0.962 33 H 0.265 0.735 34 H 0.337 0.663 35 H 0.060 0.940 36 H 0.104 0.896 37 H 0.176 0.824 38 H 0.089 0.911 39 H 0.061 0.939 40 H 0.089 0.911 41 H 0.421 0.579 42 H 0.159 0.841 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.935 15.430 5.952 18.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.150 4.150 3 C 0.090 3.910 4 H 0.038 0.962 5 C -0.579 4.579 6 H 0.058 0.942 7 C -0.172 4.172 8 N -0.575 5.575 9 Si 0.745 3.255 10 H -0.198 1.198 11 H -0.221 1.221 12 H -0.147 1.147 13 N -0.304 5.304 14 C -0.044 4.044 15 C 0.056 3.944 16 C -0.270 4.270 17 C 0.365 3.635 18 O -0.400 6.400 19 O -0.187 6.187 20 C 0.097 3.903 21 C -0.138 4.138 22 C -0.160 4.160 23 C 0.127 3.873 24 O -0.304 6.304 25 C -0.174 4.174 26 C -0.063 4.063 27 C -0.165 4.165 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.083 0.917 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.074 0.926 34 H 0.156 0.844 35 H 0.078 0.922 36 H 0.122 0.878 37 H 0.193 0.807 38 H 0.107 0.893 39 H 0.080 0.920 40 H 0.108 0.892 41 H 0.282 0.718 42 H 0.176 0.824 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -9.427 14.384 6.802 18.494 hybrid contribution 0.560 0.446 -1.474 1.638 sum -8.868 14.830 5.328 18.082 Atomic orbital electron populations 1.21751 0.95304 1.01090 1.01625 1.21803 0.95647 0.97966 0.99620 1.19366 0.92514 0.92076 0.87065 0.96246 1.21569 0.91683 1.42266 1.02399 0.94208 1.25695 0.95664 0.93693 1.02111 1.70136 1.14410 1.43804 1.29141 0.86286 0.81846 0.78011 0.79405 1.19826 1.22093 1.14679 1.60709 1.13410 1.30804 1.25492 1.21272 0.98368 0.93550 0.91180 1.21608 0.89503 0.88863 0.94425 1.22396 1.03468 1.05999 0.95169 1.19421 0.80549 0.77061 0.86517 1.90940 1.27146 1.62865 1.59009 1.83450 1.34785 1.49700 1.50803 1.18819 0.86388 0.95249 0.89838 1.19775 0.94897 0.98042 1.01114 1.20612 1.03501 1.00219 0.91699 1.18064 0.87493 0.91308 0.90470 1.84702 1.51650 1.18757 1.75331 1.21426 1.01688 0.97975 0.96313 1.20943 0.91274 0.94872 0.99186 1.19170 1.00329 1.00429 0.96583 0.93030 0.93240 0.91689 0.93863 0.94327 0.92623 0.84446 0.92246 0.87836 0.80666 0.89263 0.91972 0.89242 0.71760 0.82359 0.83862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.32 9.13 71.98 0.66 -3.66 16 2 C -0.11 -4.41 4.91 30.59 0.15 -4.25 16 3 C 0.20 8.09 1.73 44.17 0.08 8.17 16 4 H 0.02 0.78 6.25 -2.38 -0.01 0.77 16 5 C -0.54 -27.74 9.02 25.60 0.23 -27.51 16 6 H 0.04 2.27 7.61 -2.91 -0.02 2.25 16 7 C 0.03 1.50 5.30 84.66 0.45 1.94 16 8 N -0.94 -55.11 13.96 21.45 0.30 -54.81 16 9 Si 0.92 40.09 25.83 68.60 1.77 41.86 16 10 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 11 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 12 H -0.22 -8.75 5.57 99.48 0.55 -8.19 16 13 N -0.67 -23.30 6.04 -499.45 -3.02 -26.32 16 14 C 0.08 2.28 4.71 85.56 0.40 2.68 16 15 C 0.06 1.49 5.54 -18.28 -0.10 1.39 16 16 C -0.25 -6.68 9.58 22.39 0.21 -6.47 16 17 C 0.51 15.79 7.89 68.50 0.54 16.33 16 18 O -0.51 -18.42 17.91 18.96 0.34 -18.08 16 19 O -0.28 -7.98 8.92 14.77 0.13 -7.85 16 20 C 0.14 3.61 6.73 22.99 0.15 3.77 16 21 C -0.14 -2.87 5.90 -19.69 -0.12 -2.99 16 22 C -0.10 -1.73 9.58 71.24 0.68 -1.05 16 23 C 0.17 3.16 6.68 22.61 0.15 3.32 16 24 O -0.49 -6.60 12.50 -90.62 -1.13 -7.73 16 25 C -0.16 -3.06 9.91 22.13 0.22 -2.84 16 26 C -0.04 -1.04 9.00 22.27 0.20 -0.84 16 27 C -0.16 -4.17 5.87 -20.11 -0.12 -4.28 16 28 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 30 H 0.06 1.87 7.10 -2.39 -0.02 1.85 16 31 H 0.04 1.81 8.14 -2.38 -0.02 1.79 16 32 H 0.04 1.61 4.95 -2.39 -0.01 1.60 16 33 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 34 H 0.34 12.40 7.26 -89.69 -0.65 11.75 16 35 H 0.06 1.52 7.07 -2.39 -0.02 1.50 16 36 H 0.10 2.52 6.78 -2.39 -0.02 2.50 16 37 H 0.18 4.15 8.05 -2.91 -0.02 4.13 16 38 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.06 1.21 7.57 -2.39 -0.02 1.19 16 40 H 0.09 1.28 7.52 -2.38 -0.02 1.26 16 41 H 0.42 1.20 9.06 -74.05 -0.67 0.52 16 42 H 0.16 2.57 8.06 -2.92 -0.02 2.55 16 43 H 0.14 3.46 6.65 -2.91 -0.02 3.44 16 Total: -1.00 -67.39 351.24 1.78 -65.61 By element: Atomic # 1 Polarization: 24.01 SS G_CDS: -0.40 Total: 23.60 kcal Atomic # 6 Polarization: -20.08 SS G_CDS: 3.79 Total: -16.28 kcal Atomic # 7 Polarization: -78.41 SS G_CDS: -2.72 Total: -81.13 kcal Atomic # 8 Polarization: -33.00 SS G_CDS: -0.66 Total: -33.67 kcal Atomic # 14 Polarization: 40.09 SS G_CDS: 1.77 Total: 41.86 kcal Total: -67.39 1.78 -65.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846985636.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.326 kcal (2) G-P(sol) polarization free energy of solvation -67.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds