Wall clock time and date at job start Tue Mar 31 2020 12:59:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47291 * 2 1 4 4 H 1.08999 * 109.47353 * 54.56737 * 3 2 1 5 5 C 1.50699 * 109.47260 * 174.57209 * 3 2 1 6 6 H 1.08003 * 120.00039 * 120.00149 * 5 3 2 7 7 C 1.37878 * 119.99977 * 299.72528 * 5 3 2 8 8 N 1.31517 * 119.99531 * 0.27104 * 7 5 3 9 9 Si 1.86793 * 120.00148 * 180.27428 * 7 5 3 10 10 H 1.48501 * 109.46935 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.46992 * 119.99835 * 9 7 5 12 12 H 1.48499 * 109.47452 * 239.99791 * 9 7 5 13 13 N 1.46910 * 109.46975 * 294.57186 * 3 2 1 14 14 C 1.46896 * 110.99968 * 154.60064 * 13 3 2 15 15 C 1.50698 * 109.46993 * 174.73590 * 14 13 3 16 16 C 1.35853 * 120.90051 * 259.99825 * 15 14 13 17 17 C 1.41000 * 119.82340 * 179.97438 * 16 15 14 18 18 O 1.21798 * 119.16008 * 180.02562 * 17 16 15 19 19 O 1.34227 * 121.68817 * 0.02562 * 17 16 15 20 20 C 1.35023 * 121.46479 * 359.97438 * 19 17 16 21 21 C 1.38679 * 120.73675 * 180.02562 * 20 19 17 22 22 C 1.50697 * 120.10836 * 359.97438 * 21 20 19 23 23 C 1.38532 * 119.78350 * 179.16565 * 21 20 19 24 24 O 1.35740 * 119.72689 * 180.28073 * 23 21 20 25 25 C 1.39369 * 120.54031 * 0.83686 * 23 21 20 26 26 C 1.36469 * 120.42846 * 359.43873 * 25 23 21 27 27 C 1.39964 * 119.79723 * 0.02562 * 26 25 23 28 28 H 1.09000 * 109.46996 * 305.83623 * 1 2 3 29 29 H 1.09003 * 109.47035 * 65.83559 * 1 2 3 30 30 H 1.08999 * 109.46919 * 185.83376 * 1 2 3 31 31 H 1.08998 * 109.46796 * 239.99996 * 2 1 3 32 32 H 1.09001 * 109.47339 * 120.00031 * 2 1 3 33 33 H 0.96998 * 119.99892 * 180.02562 * 8 7 5 34 34 H 1.00900 * 110.99724 * 30.64380 * 13 3 2 35 35 H 1.09003 * 109.47043 * 294.73517 * 14 13 3 36 36 H 1.09003 * 109.47025 * 54.73517 * 14 13 3 37 37 H 1.08000 * 120.08995 * 359.96039 * 16 15 14 38 38 H 1.08997 * 109.47318 * 89.99880 * 22 21 20 39 39 H 1.09001 * 109.47168 * 210.00094 * 22 21 20 40 40 H 1.09004 * 109.46749 * 329.99890 * 22 21 20 41 41 H 0.96703 * 113.99479 * 270.55341 * 24 23 21 42 42 H 1.07994 * 119.78494 * 179.41853 * 25 23 21 43 43 H 1.08005 * 120.09659 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5995 1.9837 0.8373 5 6 3.5411 1.4446 0.1344 6 1 4.1518 1.8873 -0.6386 7 6 4.1344 0.8865 1.2468 8 7 3.3906 0.3476 2.1881 9 14 5.9945 0.8959 1.4171 10 1 6.5967 1.5575 0.2318 11 1 6.3754 1.6393 2.6450 12 1 6.4902 -0.5008 1.5102 13 7 1.6603 2.0961 -1.2597 14 6 1.5711 3.5526 -1.0909 15 6 1.3076 4.1979 -2.4270 16 6 2.3154 4.7689 -3.1369 17 6 2.0434 5.3659 -4.3850 18 8 2.9561 5.8739 -5.0114 19 8 0.8043 5.3887 -4.9005 20 6 -0.2414 4.8393 -4.2465 21 6 -1.5154 4.8710 -4.7935 22 6 -1.7474 5.5236 -6.1318 23 6 -2.5710 4.2860 -4.1134 24 8 -3.8165 4.3127 -4.6526 25 6 -2.3669 3.6804 -2.8749 26 6 -1.1207 3.6453 -2.3197 27 6 -0.0406 4.2217 -2.9980 28 1 -0.3633 0.6017 0.8331 29 1 -0.3633 0.4207 -0.9376 30 1 -0.3633 -1.0223 0.1045 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.8079 -0.0448 2.9709 34 1 0.7945 1.7196 -1.6157 35 1 0.7570 3.7899 -0.4060 36 1 2.5096 3.9294 -0.6842 37 1 3.3223 4.7658 -2.7462 38 1 -1.6245 4.7840 -6.9230 39 1 -2.7584 5.9295 -6.1677 40 1 -1.0271 6.3295 -6.2727 41 1 -4.3351 5.0908 -4.4061 42 1 -3.2003 3.2363 -2.3510 43 1 -0.9685 3.1743 -1.3597 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000846985637.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:01 Heat of formation + Delta-G solvation = -78.937651 kcal Electronic energy + Delta-G solvation = -26550.050542 eV Core-core repulsion = 22753.874733 eV Total energy + Delta-G solvation = -3796.175808 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.99276 -39.77982 -37.86659 -37.38204 -36.16421 -34.76227 -32.70729 -32.19252 -30.96877 -29.40082 -27.63904 -26.93327 -25.44973 -24.41455 -23.06179 -22.40770 -21.11422 -20.00139 -19.71768 -17.98556 -17.74531 -17.52018 -16.77860 -16.39780 -15.60023 -15.46099 -15.10052 -14.92884 -14.68446 -14.01040 -13.94241 -13.90133 -13.50614 -13.29909 -12.80746 -12.72106 -12.60114 -12.53930 -12.39194 -12.24748 -11.93098 -11.81224 -11.37333 -11.16524 -10.98721 -10.92386 -10.67236 -10.34641 -10.23058 -10.05608 -9.80377 -9.69533 -9.19864 -8.86103 -8.44060 -8.36748 -7.48774 -6.06261 -4.10817 0.10907 0.82780 1.38290 2.31280 2.72869 3.27249 3.36095 3.41414 3.47149 3.80280 4.06218 4.25383 4.31638 4.38992 4.56264 4.78463 4.94453 5.08841 5.21388 5.27364 5.33795 5.38204 5.43379 5.51895 5.73598 5.84543 5.87461 5.93946 5.99231 6.02485 6.04747 6.14806 6.21808 6.28730 6.38971 6.70816 6.92143 7.01671 7.15625 7.20557 7.29201 7.48705 7.64373 7.80230 8.05893 8.24438 8.54761 8.97167 9.55097 10.99191 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015621 B = 0.003784 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.066564 B = 7397.650823 C = 8959.674133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C 0.219 3.781 4 H 0.006 0.994 5 C -0.497 4.497 6 H 0.064 0.936 7 C 0.057 3.943 8 N -0.895 5.895 9 Si 0.895 3.105 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.285 1.285 13 N -0.677 5.677 14 C 0.092 3.908 15 C 0.047 3.953 16 C -0.242 4.242 17 C 0.513 3.487 18 O -0.471 6.471 19 O -0.272 6.272 20 C 0.158 3.842 21 C -0.130 4.130 22 C -0.102 4.102 23 C 0.152 3.848 24 O -0.488 6.488 25 C -0.159 4.159 26 C -0.043 4.043 27 C -0.145 4.145 28 H 0.043 0.957 29 H 0.034 0.966 30 H 0.039 0.961 31 H 0.043 0.957 32 H 0.102 0.898 33 H 0.260 0.740 34 H 0.320 0.680 35 H 0.040 0.960 36 H 0.100 0.900 37 H 0.167 0.833 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.394 0.606 42 H 0.140 0.860 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.104 8.719 -8.918 19.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.165 4.165 3 C 0.113 3.887 4 H 0.023 0.977 5 C -0.536 4.536 6 H 0.082 0.918 7 C -0.144 4.144 8 N -0.535 5.535 9 Si 0.723 3.277 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.211 1.211 13 N -0.310 5.310 14 C -0.037 4.037 15 C 0.045 3.955 16 C -0.262 4.262 17 C 0.363 3.637 18 O -0.359 6.359 19 O -0.184 6.184 20 C 0.113 3.887 21 C -0.131 4.131 22 C -0.159 4.159 23 C 0.106 3.894 24 O -0.299 6.299 25 C -0.178 4.178 26 C -0.061 4.061 27 C -0.146 4.146 28 H 0.062 0.938 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.120 0.880 33 H 0.070 0.930 34 H 0.137 0.863 35 H 0.058 0.942 36 H 0.118 0.882 37 H 0.184 0.816 38 H 0.094 0.906 39 H 0.089 0.911 40 H 0.091 0.909 41 H 0.251 0.749 42 H 0.158 0.842 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -13.845 8.446 -9.703 18.899 hybrid contribution 0.077 0.265 1.067 1.102 sum -13.768 8.711 -8.636 18.439 Atomic orbital electron populations 1.21902 0.99584 1.00047 0.99369 1.21785 0.91237 1.00097 1.03377 1.19234 0.95847 0.90064 0.83562 0.97651 1.21225 0.91012 1.37028 1.04350 0.91814 1.24947 0.98248 0.95433 0.95759 1.69869 1.34762 1.39355 1.09482 0.86486 0.85570 0.77708 0.77947 1.19672 1.21191 1.21085 1.60772 1.36281 0.99955 1.33949 1.21002 1.02365 0.91182 0.89137 1.21784 0.89787 0.88274 0.95654 1.22452 1.02436 1.06066 0.95287 1.19301 0.79174 0.78941 0.86321 1.90968 1.37471 1.44846 1.62636 1.83502 1.17347 1.67514 1.50036 1.18569 0.85855 0.94016 0.90272 1.19520 0.89841 1.03831 0.99921 1.20536 1.02554 1.00577 0.92214 1.18085 0.84547 0.95869 0.90856 1.84788 1.23570 1.48228 1.73309 1.21147 0.98465 1.03034 0.95134 1.20832 0.90656 0.95200 0.99453 1.19172 0.95126 1.04903 0.95366 0.93792 0.94724 0.94154 0.93851 0.87995 0.93028 0.86267 0.94233 0.88215 0.81555 0.90639 0.91069 0.90869 0.74860 0.84200 0.83968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 9.64 37.16 0.36 -2.28 16 2 C -0.13 -2.76 5.36 -26.73 -0.14 -2.91 16 3 C 0.22 4.98 2.02 -68.86 -0.14 4.84 16 4 H 0.01 0.14 7.85 -51.93 -0.41 -0.26 16 5 C -0.50 -12.90 8.56 -34.44 -0.29 -13.19 16 6 H 0.06 1.70 7.81 -52.48 -0.41 1.29 16 7 C 0.06 1.50 5.29 -17.82 -0.09 1.41 16 8 N -0.90 -24.24 11.30 55.43 0.63 -23.61 16 9 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 16 10 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 11 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 N -0.68 -12.84 6.26 -109.22 -0.68 -13.52 16 14 C 0.09 1.50 4.96 -4.98 -0.02 1.47 16 15 C 0.05 0.69 5.63 -102.18 -0.58 0.11 16 16 C -0.24 -3.74 9.59 -39.39 -0.38 -4.12 16 17 C 0.51 8.43 7.89 31.78 0.25 8.68 16 18 O -0.47 -8.96 17.91 -19.60 -0.35 -9.31 16 19 O -0.27 -4.08 8.92 -20.80 -0.19 -4.27 16 20 C 0.16 2.09 6.72 -38.48 -0.26 1.83 16 21 C -0.13 -1.43 5.90 -104.35 -0.62 -2.04 16 22 C -0.10 -0.93 9.57 36.00 0.34 -0.58 16 23 C 0.15 1.46 6.68 -39.05 -0.26 1.19 16 24 O -0.49 -3.68 12.51 -18.93 -0.24 -3.91 16 25 C -0.16 -1.52 9.91 -39.80 -0.39 -1.91 16 26 C -0.04 -0.48 9.02 -39.57 -0.36 -0.84 16 27 C -0.14 -1.91 5.87 -105.01 -0.62 -2.53 16 28 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.03 0.53 6.65 -51.93 -0.35 0.18 16 30 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.10 2.54 5.96 -51.93 -0.31 2.23 16 33 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 34 H 0.32 5.49 5.93 -39.29 -0.23 5.25 16 35 H 0.04 0.59 7.18 -51.93 -0.37 0.22 16 36 H 0.10 1.76 7.82 -51.93 -0.41 1.35 16 37 H 0.17 2.52 8.05 -52.49 -0.42 2.10 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.48 7.54 -51.93 -0.39 0.09 16 40 H 0.07 0.70 7.57 -51.93 -0.39 0.30 16 41 H 0.39 1.01 9.06 45.56 0.41 1.42 16 42 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 43 H 0.14 1.52 6.45 -52.48 -0.34 1.18 16 LS Contribution 357.17 15.07 5.38 5.38 Total: -1.00 -30.40 357.17 -8.53 -38.94 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -4.87 Total: 5.37 kcal Atomic # 6 Polarization: -7.66 SS G_CDS: -3.20 Total: -10.86 kcal Atomic # 7 Polarization: -37.08 SS G_CDS: -0.06 Total: -37.13 kcal Atomic # 8 Polarization: -16.72 SS G_CDS: -0.77 Total: -17.49 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.40 -8.53 -38.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846985637.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.000 kcal (2) G-P(sol) polarization free energy of solvation -30.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds