Wall clock time and date at job start Tue Mar 31 2020 12:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47291 * 2 1 4 4 H 1.08999 * 109.47353 * 54.56737 * 3 2 1 5 5 C 1.50699 * 109.47260 * 174.57209 * 3 2 1 6 6 H 1.08003 * 120.00039 * 120.00149 * 5 3 2 7 7 C 1.37878 * 119.99977 * 299.72528 * 5 3 2 8 8 N 1.31517 * 119.99531 * 0.27104 * 7 5 3 9 9 Si 1.86793 * 120.00148 * 180.27428 * 7 5 3 10 10 H 1.48501 * 109.46935 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.46992 * 119.99835 * 9 7 5 12 12 H 1.48499 * 109.47452 * 239.99791 * 9 7 5 13 13 N 1.46910 * 109.46975 * 294.57186 * 3 2 1 14 14 C 1.46896 * 110.99968 * 154.60064 * 13 3 2 15 15 C 1.50698 * 109.46993 * 174.73590 * 14 13 3 16 16 C 1.35853 * 120.90051 * 259.99825 * 15 14 13 17 17 C 1.41000 * 119.82340 * 179.97438 * 16 15 14 18 18 O 1.21798 * 119.16008 * 180.02562 * 17 16 15 19 19 O 1.34227 * 121.68817 * 0.02562 * 17 16 15 20 20 C 1.35023 * 121.46479 * 359.97438 * 19 17 16 21 21 C 1.38679 * 120.73675 * 180.02562 * 20 19 17 22 22 C 1.50697 * 120.10836 * 359.97438 * 21 20 19 23 23 C 1.38532 * 119.78350 * 179.16565 * 21 20 19 24 24 O 1.35740 * 119.72689 * 180.28073 * 23 21 20 25 25 C 1.39369 * 120.54031 * 0.83686 * 23 21 20 26 26 C 1.36469 * 120.42846 * 359.43873 * 25 23 21 27 27 C 1.39964 * 119.79723 * 0.02562 * 26 25 23 28 28 H 1.09000 * 109.46996 * 305.83623 * 1 2 3 29 29 H 1.09003 * 109.47035 * 65.83559 * 1 2 3 30 30 H 1.08999 * 109.46919 * 185.83376 * 1 2 3 31 31 H 1.08998 * 109.46796 * 239.99996 * 2 1 3 32 32 H 1.09001 * 109.47339 * 120.00031 * 2 1 3 33 33 H 0.96998 * 119.99892 * 180.02562 * 8 7 5 34 34 H 1.00900 * 110.99724 * 30.64380 * 13 3 2 35 35 H 1.09003 * 109.47043 * 294.73517 * 14 13 3 36 36 H 1.09003 * 109.47025 * 54.73517 * 14 13 3 37 37 H 1.08000 * 120.08995 * 359.96039 * 16 15 14 38 38 H 1.08997 * 109.47318 * 89.99880 * 22 21 20 39 39 H 1.09001 * 109.47168 * 210.00094 * 22 21 20 40 40 H 1.09004 * 109.46749 * 329.99890 * 22 21 20 41 41 H 0.96703 * 113.99479 * 270.55341 * 24 23 21 42 42 H 1.07994 * 119.78494 * 179.41853 * 25 23 21 43 43 H 1.08005 * 120.09659 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5995 1.9837 0.8373 5 6 3.5411 1.4446 0.1344 6 1 4.1518 1.8873 -0.6386 7 6 4.1344 0.8865 1.2468 8 7 3.3906 0.3476 2.1881 9 14 5.9945 0.8959 1.4171 10 1 6.5967 1.5575 0.2318 11 1 6.3754 1.6393 2.6450 12 1 6.4902 -0.5008 1.5102 13 7 1.6603 2.0961 -1.2597 14 6 1.5711 3.5526 -1.0909 15 6 1.3076 4.1979 -2.4270 16 6 2.3154 4.7689 -3.1369 17 6 2.0434 5.3659 -4.3850 18 8 2.9561 5.8739 -5.0114 19 8 0.8043 5.3887 -4.9005 20 6 -0.2414 4.8393 -4.2465 21 6 -1.5154 4.8710 -4.7935 22 6 -1.7474 5.5236 -6.1318 23 6 -2.5710 4.2860 -4.1134 24 8 -3.8165 4.3127 -4.6526 25 6 -2.3669 3.6804 -2.8749 26 6 -1.1207 3.6453 -2.3197 27 6 -0.0406 4.2217 -2.9980 28 1 -0.3633 0.6017 0.8331 29 1 -0.3633 0.4207 -0.9376 30 1 -0.3633 -1.0223 0.1045 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.8079 -0.0448 2.9709 34 1 0.7945 1.7196 -1.6157 35 1 0.7570 3.7899 -0.4060 36 1 2.5096 3.9294 -0.6842 37 1 3.3223 4.7658 -2.7462 38 1 -1.6245 4.7840 -6.9230 39 1 -2.7584 5.9295 -6.1677 40 1 -1.0271 6.3295 -6.2727 41 1 -4.3351 5.0908 -4.4061 42 1 -3.2003 3.2363 -2.3510 43 1 -0.9685 3.1743 -1.3597 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000846985637.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:00 Heat of formation + Delta-G solvation = -98.028696 kcal Electronic energy + Delta-G solvation = -26550.878391 eV Core-core repulsion = 22753.874733 eV Total energy + Delta-G solvation = -3797.003658 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.09194 -40.68148 -38.96901 -38.76081 -37.34153 -35.98357 -34.12382 -33.49331 -32.46525 -30.36554 -29.08564 -28.00405 -26.99741 -25.41878 -24.61775 -23.59089 -22.17352 -21.46907 -20.92878 -19.04806 -18.65704 -18.50861 -18.33932 -17.94453 -16.79780 -16.68250 -16.44425 -16.19204 -15.79652 -15.72395 -15.05987 -14.89056 -14.67230 -14.47159 -14.20080 -14.01214 -13.77572 -13.72368 -13.39496 -13.17071 -13.13490 -13.03265 -12.91938 -12.75436 -12.56303 -12.46387 -11.99061 -11.78105 -11.69216 -11.49498 -11.40101 -11.17912 -10.95193 -10.42030 -9.73880 -9.37569 -9.09577 -8.07091 -6.17439 -0.92584 -0.09857 0.35993 1.21575 1.39982 1.44369 1.54518 1.66310 2.43754 2.48971 2.94128 3.06360 3.19782 3.21006 3.31777 3.73556 3.79202 3.84954 4.04011 4.16637 4.29138 4.50735 4.53528 4.57622 4.60897 4.65470 4.72554 4.74671 4.79579 4.91406 5.02462 5.11552 5.15636 5.19033 5.22826 5.28190 5.39563 5.46107 5.59066 5.75726 5.89740 6.00625 6.27285 6.31924 6.44619 6.76489 6.90283 6.95504 7.51503 8.95961 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015621 B = 0.003784 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.066564 B = 7397.650823 C = 8959.674133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.123 4.123 3 C 0.228 3.772 4 H -0.014 1.014 5 C -0.512 4.512 6 H 0.048 0.952 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.947 3.053 10 H -0.275 1.275 11 H -0.282 1.282 12 H -0.283 1.283 13 N -0.681 5.681 14 C 0.096 3.904 15 C 0.065 3.935 16 C -0.263 4.263 17 C 0.516 3.484 18 O -0.511 6.511 19 O -0.275 6.275 20 C 0.138 3.862 21 C -0.138 4.138 22 C -0.103 4.103 23 C 0.174 3.826 24 O -0.488 6.488 25 C -0.148 4.148 26 C -0.043 4.043 27 C -0.163 4.163 28 H 0.045 0.955 29 H 0.059 0.941 30 H 0.054 0.946 31 H 0.033 0.967 32 H 0.069 0.931 33 H 0.260 0.740 34 H 0.333 0.667 35 H 0.061 0.939 36 H 0.080 0.920 37 H 0.160 0.840 38 H 0.074 0.926 39 H 0.098 0.902 40 H 0.062 0.938 41 H 0.420 0.580 42 H 0.170 0.830 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.242 8.556 -9.290 22.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.162 4.162 3 C 0.120 3.880 4 H 0.003 0.997 5 C -0.551 4.551 6 H 0.067 0.933 7 C -0.183 4.183 8 N -0.555 5.555 9 Si 0.774 3.226 10 H -0.199 1.199 11 H -0.207 1.207 12 H -0.209 1.209 13 N -0.314 5.314 14 C -0.033 4.033 15 C 0.064 3.936 16 C -0.283 4.283 17 C 0.368 3.632 18 O -0.403 6.403 19 O -0.187 6.187 20 C 0.094 3.906 21 C -0.139 4.139 22 C -0.159 4.159 23 C 0.128 3.872 24 O -0.303 6.303 25 C -0.166 4.166 26 C -0.061 4.061 27 C -0.164 4.164 28 H 0.064 0.936 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.051 0.949 32 H 0.087 0.913 33 H 0.069 0.931 34 H 0.152 0.848 35 H 0.079 0.921 36 H 0.098 0.902 37 H 0.178 0.822 38 H 0.093 0.907 39 H 0.117 0.883 40 H 0.081 0.919 41 H 0.282 0.718 42 H 0.187 0.813 43 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -17.034 8.298 -10.076 21.460 hybrid contribution 0.817 0.310 1.157 1.450 sum -16.217 8.608 -8.919 20.411 Atomic orbital electron populations 1.21769 0.95839 1.01367 1.00815 1.21613 0.94618 0.98769 1.01201 1.18966 0.93950 0.90772 0.84307 0.99674 1.21506 0.93009 1.36673 1.03943 0.93326 1.25546 1.01577 0.95420 0.95737 1.69972 1.35893 1.39908 1.09750 0.85671 0.81653 0.77558 0.77699 1.19943 1.20748 1.20880 1.60550 1.37413 1.01332 1.32142 1.20908 1.02272 0.89642 0.90434 1.21655 0.90729 0.86865 0.94379 1.22334 1.02603 1.07776 0.95563 1.19285 0.79355 0.78348 0.86178 1.90932 1.38842 1.46868 1.63651 1.83453 1.17253 1.67661 1.50294 1.18921 0.86072 0.94881 0.90739 1.19801 0.89175 1.04123 1.00779 1.20592 1.03927 1.00190 0.91183 1.18100 0.85039 0.93881 0.90171 1.84736 1.22526 1.49859 1.73193 1.21453 0.98484 1.01814 0.94878 1.20944 0.90684 0.94874 0.99618 1.19170 0.94722 1.06598 0.95906 0.93624 0.92163 0.92683 0.94859 0.91285 0.93073 0.84759 0.92076 0.90184 0.82231 0.90746 0.88326 0.91871 0.71751 0.81252 0.83297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.56 9.64 71.98 0.69 -3.87 16 2 C -0.12 -5.35 5.36 30.59 0.16 -5.18 16 3 C 0.23 10.37 2.02 44.17 0.09 10.46 16 4 H -0.01 -0.70 7.85 -2.39 -0.02 -0.72 16 5 C -0.51 -27.10 8.56 25.60 0.22 -26.89 16 6 H 0.05 2.66 7.81 -2.91 -0.02 2.64 16 7 C 0.02 0.85 5.29 84.65 0.45 1.30 16 8 N -0.91 -50.20 11.30 21.45 0.24 -49.95 16 9 Si 0.95 43.33 29.54 68.60 2.03 45.36 16 10 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 11 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 12 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 13 N -0.68 -25.48 6.26 -499.45 -3.12 -28.61 16 14 C 0.10 3.11 4.96 85.56 0.42 3.54 16 15 C 0.07 1.92 5.63 -18.28 -0.10 1.82 16 16 C -0.26 -8.47 9.59 22.39 0.21 -8.25 16 17 C 0.52 17.72 7.89 68.50 0.54 18.26 16 18 O -0.51 -20.52 17.91 18.95 0.34 -20.18 16 19 O -0.27 -8.38 8.92 14.65 0.13 -8.25 16 20 C 0.14 3.51 6.72 22.98 0.15 3.67 16 21 C -0.14 -2.67 5.90 -19.69 -0.12 -2.79 16 22 C -0.10 -1.62 9.57 71.23 0.68 -0.94 16 23 C 0.17 2.61 6.68 22.61 0.15 2.76 16 24 O -0.49 -4.88 12.51 -90.65 -1.13 -6.01 16 25 C -0.15 -2.15 9.91 22.13 0.22 -1.94 16 26 C -0.04 -0.83 9.02 22.27 0.20 -0.63 16 27 C -0.16 -4.07 5.87 -20.12 -0.12 -4.19 16 28 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.06 1.63 6.65 -2.39 -0.02 1.62 16 30 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.03 1.46 8.14 -2.39 -0.02 1.45 16 32 H 0.07 3.48 5.96 -2.39 -0.01 3.46 16 33 H 0.26 13.68 8.31 -92.71 -0.77 12.91 16 34 H 0.33 10.82 5.93 -89.69 -0.53 10.29 16 35 H 0.06 1.74 7.18 -2.39 -0.02 1.72 16 36 H 0.08 2.92 7.82 -2.39 -0.02 2.90 16 37 H 0.16 5.22 8.05 -2.91 -0.02 5.20 16 38 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.10 0.98 7.54 -2.39 -0.02 0.96 16 40 H 0.06 1.13 7.57 -2.38 -0.02 1.11 16 41 H 0.42 -0.15 9.06 -74.06 -0.67 -0.82 16 42 H 0.17 1.53 8.06 -2.91 -0.02 1.51 16 43 H 0.15 2.66 6.45 -2.91 -0.02 2.64 16 Total: -1.00 -67.47 357.17 2.20 -65.26 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: -0.14 Total: 15.26 kcal Atomic # 6 Polarization: -16.74 SS G_CDS: 3.86 Total: -12.88 kcal Atomic # 7 Polarization: -75.68 SS G_CDS: -2.88 Total: -78.56 kcal Atomic # 8 Polarization: -33.78 SS G_CDS: -0.66 Total: -34.44 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -67.47 2.20 -65.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846985637.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.765 kcal (2) G-P(sol) polarization free energy of solvation -67.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds