Wall clock time and date at job start Tue Mar 31 2020 13:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47300 * 2 1 4 4 H 1.08998 * 109.47232 * 185.17983 * 3 2 1 5 5 C 1.50703 * 109.46940 * 305.17726 * 3 2 1 6 6 H 1.07994 * 119.99904 * 119.99756 * 5 3 2 7 7 C 1.37877 * 119.99940 * 299.99880 * 5 3 2 8 8 N 1.31513 * 120.00010 * 179.97438 * 7 5 3 9 9 Si 1.86798 * 119.99877 * 0.02562 * 7 5 3 10 10 H 1.48502 * 109.47301 * 89.99940 * 9 7 5 11 11 H 1.48501 * 109.46927 * 209.99727 * 9 7 5 12 12 H 1.48504 * 109.47457 * 329.99769 * 9 7 5 13 13 N 1.46906 * 109.47207 * 65.17678 * 3 2 1 14 14 C 1.46899 * 110.99604 * 85.91827 * 13 3 2 15 15 C 1.53000 * 109.46630 * 174.67736 * 14 13 3 16 16 H 1.09006 * 109.47122 * 305.00479 * 15 14 13 17 17 O 1.42897 * 109.47280 * 65.00139 * 15 14 13 18 18 C 1.50694 * 109.47250 * 185.00228 * 15 14 13 19 19 C 1.38262 * 120.00180 * 279.72941 * 18 15 14 20 20 C 1.38214 * 120.00181 * 179.76757 * 19 18 15 21 21 C 1.38257 * 119.99920 * 0.50322 * 20 19 18 22 22 C 1.38213 * 119.99841 * 359.74351 * 21 20 19 23 23 C 1.50703 * 119.99934 * 179.97438 * 22 21 20 24 24 F 1.39895 * 109.47535 * 270.03044 * 23 22 21 25 25 F 1.39907 * 109.46731 * 30.03198 * 23 22 21 26 26 F 1.39896 * 109.46949 * 150.02567 * 23 22 21 27 27 C 1.38215 * 120.00283 * 100.00101 * 18 15 14 28 28 H 1.08997 * 109.47129 * 174.85934 * 1 2 3 29 29 H 1.08995 * 109.46736 * 54.86059 * 1 2 3 30 30 H 1.09002 * 109.47052 * 294.85574 * 1 2 3 31 31 H 1.09003 * 109.46556 * 119.99980 * 2 1 3 32 32 H 1.08997 * 109.46929 * 239.99374 * 2 1 3 33 33 H 0.97003 * 119.99864 * 180.02562 * 8 7 5 34 34 H 1.00903 * 110.99742 * 321.96684 * 13 3 2 35 35 H 1.08995 * 109.47219 * 294.67437 * 14 13 3 36 36 H 1.08999 * 109.47280 * 54.68113 * 14 13 3 37 37 H 0.96703 * 114.00320 * 59.99934 * 17 15 14 38 38 H 1.07997 * 119.99340 * 359.97438 * 19 18 15 39 39 H 1.07994 * 119.99795 * 180.23157 * 20 19 18 40 40 H 1.07994 * 119.99691 * 179.73098 * 21 20 19 41 41 H 1.08003 * 119.99816 * 359.97438 * 27 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1261 1.4438 -0.0928 5 6 1.4358 2.1889 -1.1614 6 1 0.8267 3.0628 -0.9835 7 6 1.6605 1.7561 -2.4510 8 7 1.1328 2.4072 -3.4645 9 14 2.7134 0.2442 -2.7586 10 1 1.8521 -0.9655 -2.7674 11 1 3.3962 0.3751 -4.0709 12 1 3.7291 0.1208 -1.6823 13 7 1.6551 2.0980 1.2571 14 6 2.6442 1.8368 2.3113 15 6 2.2809 2.6401 3.5617 16 1 2.1904 3.6950 3.3022 17 8 1.0372 2.1701 4.0853 18 6 3.3598 2.4690 4.5998 19 6 3.3879 1.3325 5.3867 20 6 4.3802 1.1733 6.3356 21 6 5.3386 2.1552 6.5050 22 6 5.3075 3.2936 5.7218 23 6 6.3519 4.3643 5.9068 24 9 5.9084 5.2890 6.8582 25 9 7.5455 3.7805 6.3449 26 9 6.5714 5.0169 4.6890 27 6 4.3179 3.4506 4.7692 28 1 -0.3633 -1.0235 -0.0921 29 1 -0.3632 0.5915 -0.8404 30 1 -0.3633 0.4320 0.9325 31 1 1.8933 -0.5139 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.2906 2.1025 -4.3718 34 1 0.7326 1.8100 1.5473 35 1 2.6476 0.7735 2.5509 36 1 3.6334 2.1340 1.9632 37 1 1.0444 1.2366 4.3380 38 1 2.6364 0.5677 5.2576 39 1 4.4043 0.2839 6.9476 40 1 6.1114 2.0328 7.2493 41 1 4.2936 4.3402 4.1572 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000846991528.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:03 Heat of formation + Delta-G solvation = -174.202425 kcal Electronic energy + Delta-G solvation = -26628.507165 eV Core-core repulsion = 22286.343626 eV Total energy + Delta-G solvation = -4342.163539 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.38669 -47.90251 -47.84713 -40.13285 -37.71652 -36.21605 -32.74543 -32.28215 -31.92923 -31.03643 -27.83328 -26.34505 -26.13586 -23.25428 -23.05858 -22.67269 -21.12789 -19.62416 -18.72437 -18.62124 -18.56103 -17.00538 -16.59133 -16.15620 -16.05520 -15.33514 -15.06037 -14.79604 -14.70613 -14.43089 -14.29610 -14.12754 -14.00352 -13.96811 -13.89203 -13.50299 -13.25679 -13.05731 -12.94966 -12.60513 -12.38809 -12.17114 -11.96647 -11.56435 -11.21943 -11.07641 -10.82502 -10.70202 -10.50435 -10.13531 -9.88287 -9.55522 -9.41815 -9.23746 -9.05943 -8.55288 -7.47948 -6.05487 -4.01473 0.59331 0.89068 2.40495 3.11563 3.23882 3.32680 3.36345 3.45191 3.75286 4.17070 4.27482 4.39007 4.39611 4.48170 4.62389 4.79849 4.95634 5.10031 5.24059 5.26821 5.32873 5.41191 5.55046 5.78739 5.83102 5.87649 5.92549 5.93612 6.00466 6.15088 6.23243 6.40855 6.49645 6.74344 6.77191 6.95951 7.25804 7.53415 7.69095 7.86183 8.30561 8.67967 9.06607 9.57162 11.07869 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.017690 B = 0.003101 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.393001 B = 9028.478006 C = 9675.410226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.158 4.158 3 C 0.186 3.814 4 H 0.032 0.968 5 C -0.491 4.491 6 H 0.083 0.917 7 C 0.070 3.930 8 N -0.900 5.900 9 Si 0.880 3.120 10 H -0.279 1.279 11 H -0.297 1.297 12 H -0.271 1.271 13 N -0.667 5.667 14 C 0.033 3.967 15 C 0.148 3.852 16 H 0.121 0.879 17 O -0.548 6.548 18 C -0.107 4.107 19 C -0.081 4.081 20 C -0.118 4.118 21 C -0.076 4.076 22 C -0.182 4.182 23 C 0.509 3.491 24 F -0.177 7.177 25 F -0.179 7.179 26 F -0.174 7.174 27 C -0.058 4.058 28 H 0.030 0.970 29 H 0.081 0.919 30 H 0.042 0.958 31 H 0.030 0.970 32 H 0.049 0.951 33 H 0.263 0.737 34 H 0.339 0.661 35 H 0.022 0.978 36 H 0.077 0.923 37 H 0.367 0.633 38 H 0.130 0.870 39 H 0.135 0.865 40 H 0.134 0.866 41 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.043 -2.589 22.142 23.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.197 4.197 3 C 0.077 3.923 4 H 0.049 0.951 5 C -0.529 4.529 6 H 0.101 0.899 7 C -0.132 4.132 8 N -0.538 5.538 9 Si 0.711 3.289 10 H -0.207 1.207 11 H -0.224 1.224 12 H -0.197 1.197 13 N -0.298 5.298 14 C -0.098 4.098 15 C 0.089 3.911 16 H 0.139 0.861 17 O -0.352 6.352 18 C -0.108 4.108 19 C -0.099 4.099 20 C -0.136 4.136 21 C -0.094 4.094 22 C -0.183 4.183 23 C 0.455 3.545 24 F -0.159 7.159 25 F -0.160 7.160 26 F -0.155 7.155 27 C -0.076 4.076 28 H 0.049 0.951 29 H 0.100 0.900 30 H 0.061 0.939 31 H 0.049 0.951 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.159 0.841 35 H 0.040 0.960 36 H 0.095 0.905 37 H 0.214 0.786 38 H 0.148 0.852 39 H 0.153 0.847 40 H 0.152 0.848 41 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 8.147 -1.309 21.647 23.166 hybrid contribution 0.944 -2.319 0.026 2.504 sum 9.091 -3.628 21.673 23.781 Atomic orbital electron populations 1.21655 0.95655 0.99606 1.02641 1.22495 0.97376 1.01019 0.98796 1.19723 0.95895 0.88238 0.88481 0.95065 1.20888 1.31215 1.12785 0.88025 0.89943 1.24891 0.95526 0.96573 0.96181 1.69878 1.44931 1.40198 0.98822 0.86978 0.81118 0.83940 0.76864 1.20653 1.22414 1.19666 1.60549 1.04189 1.62681 1.02392 1.22599 0.98487 0.96253 0.92451 1.21037 0.80504 1.00979 0.88622 0.86122 1.86694 1.33363 1.30449 1.84739 1.20716 0.97535 0.94280 0.98260 1.21164 0.97744 0.96650 0.94313 1.21102 0.94543 0.99143 0.98774 1.20930 0.98638 0.92126 0.97681 1.19948 0.98686 0.96515 1.03150 1.18301 0.80830 0.81386 0.74028 1.93226 1.89214 1.68282 1.65130 1.93185 1.49032 1.84063 1.89721 1.93218 1.95133 1.82749 1.44436 1.20852 0.92170 0.99325 0.95302 0.95127 0.89963 0.93924 0.95119 0.93327 0.92706 0.84144 0.95991 0.90492 0.78570 0.85223 0.84730 0.84782 0.84179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 9.40 37.16 0.35 -2.33 16 2 C -0.16 -3.24 5.22 -26.73 -0.14 -3.38 16 3 C 0.19 4.17 1.93 -68.86 -0.13 4.04 16 4 H 0.03 0.74 6.76 -51.93 -0.35 0.39 16 5 C -0.49 -13.30 7.83 -34.44 -0.27 -13.57 16 6 H 0.08 2.49 8.06 -52.49 -0.42 2.06 16 7 C 0.07 1.95 5.42 -17.82 -0.10 1.86 16 8 N -0.90 -27.02 13.96 55.43 0.77 -26.25 16 9 Si 0.88 21.52 24.32 -169.99 -4.13 17.38 16 10 H -0.28 -6.67 6.92 56.52 0.39 -6.28 16 11 H -0.30 -7.34 7.11 56.52 0.40 -6.93 16 12 H -0.27 -6.37 6.53 56.52 0.37 -6.00 16 13 N -0.67 -12.75 6.21 -107.95 -0.67 -13.42 16 14 C 0.03 0.49 5.16 -3.82 -0.02 0.47 16 15 C 0.15 1.85 3.45 -27.89 -0.10 1.76 16 16 H 0.12 1.64 8.00 -51.93 -0.42 1.22 16 17 O -0.55 -6.71 12.80 -35.23 -0.45 -7.16 16 18 C -0.11 -1.15 4.97 -104.62 -0.52 -1.67 16 19 C -0.08 -0.71 9.32 -39.58 -0.37 -1.08 16 20 C -0.12 -0.92 10.05 -39.58 -0.40 -1.32 16 21 C -0.08 -0.65 9.40 -39.58 -0.37 -1.03 16 22 C -0.18 -1.86 5.45 -104.62 -0.57 -2.43 16 23 C 0.51 5.33 3.36 36.01 0.12 5.45 16 24 F -0.18 -1.92 17.30 2.25 0.04 -1.88 16 25 F -0.18 -1.84 16.46 2.25 0.04 -1.80 16 26 F -0.17 -2.00 16.46 2.25 0.04 -1.96 16 27 C -0.06 -0.63 9.02 -39.58 -0.36 -0.99 16 28 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.08 1.85 6.85 -51.93 -0.36 1.49 16 30 H 0.04 0.73 6.63 -51.93 -0.34 0.39 16 31 H 0.03 0.55 7.50 -51.93 -0.39 0.16 16 32 H 0.05 1.08 3.42 -51.93 -0.18 0.90 16 33 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 34 H 0.34 6.26 6.33 -39.29 -0.25 6.01 16 35 H 0.02 0.31 7.54 -51.93 -0.39 -0.08 16 36 H 0.08 1.22 7.92 -51.93 -0.41 0.80 16 37 H 0.37 3.17 7.50 45.56 0.34 3.52 16 38 H 0.13 0.86 6.78 -52.49 -0.36 0.50 16 39 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 40 H 0.13 0.91 7.60 -52.49 -0.40 0.51 16 41 H 0.14 1.45 7.58 -52.48 -0.40 1.05 16 LS Contribution 341.06 15.07 5.14 5.14 Total: -1.00 -30.51 341.06 -6.44 -36.95 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -4.34 Total: 7.21 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: -2.87 Total: -14.21 kcal Atomic # 7 Polarization: -39.77 SS G_CDS: 0.10 Total: -39.66 kcal Atomic # 8 Polarization: -6.71 SS G_CDS: -0.45 Total: -7.16 kcal Atomic # 9 Polarization: -5.76 SS G_CDS: 0.11 Total: -5.64 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.13 Total: 17.38 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.51 -6.44 -36.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846991528.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.254 kcal (2) G-P(sol) polarization free energy of solvation -30.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds