Wall clock time and date at job start Tue Mar 31 2020 13:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47300 * 2 1 4 4 H 1.08998 * 109.47232 * 185.17983 * 3 2 1 5 5 C 1.50703 * 109.46940 * 305.17726 * 3 2 1 6 6 H 1.07994 * 119.99904 * 119.99756 * 5 3 2 7 7 C 1.37877 * 119.99940 * 299.99880 * 5 3 2 8 8 N 1.31513 * 120.00010 * 179.97438 * 7 5 3 9 9 Si 1.86798 * 119.99877 * 0.02562 * 7 5 3 10 10 H 1.48502 * 109.47301 * 89.99940 * 9 7 5 11 11 H 1.48501 * 109.46927 * 209.99727 * 9 7 5 12 12 H 1.48504 * 109.47457 * 329.99769 * 9 7 5 13 13 N 1.46906 * 109.47207 * 65.17678 * 3 2 1 14 14 C 1.46899 * 110.99604 * 85.91827 * 13 3 2 15 15 C 1.53000 * 109.46630 * 174.67736 * 14 13 3 16 16 H 1.09006 * 109.47122 * 305.00479 * 15 14 13 17 17 O 1.42897 * 109.47280 * 65.00139 * 15 14 13 18 18 C 1.50694 * 109.47250 * 185.00228 * 15 14 13 19 19 C 1.38262 * 120.00180 * 279.72941 * 18 15 14 20 20 C 1.38214 * 120.00181 * 179.76757 * 19 18 15 21 21 C 1.38257 * 119.99920 * 0.50322 * 20 19 18 22 22 C 1.38213 * 119.99841 * 359.74351 * 21 20 19 23 23 C 1.50703 * 119.99934 * 179.97438 * 22 21 20 24 24 F 1.39895 * 109.47535 * 270.03044 * 23 22 21 25 25 F 1.39907 * 109.46731 * 30.03198 * 23 22 21 26 26 F 1.39896 * 109.46949 * 150.02567 * 23 22 21 27 27 C 1.38215 * 120.00283 * 100.00101 * 18 15 14 28 28 H 1.08997 * 109.47129 * 174.85934 * 1 2 3 29 29 H 1.08995 * 109.46736 * 54.86059 * 1 2 3 30 30 H 1.09002 * 109.47052 * 294.85574 * 1 2 3 31 31 H 1.09003 * 109.46556 * 119.99980 * 2 1 3 32 32 H 1.08997 * 109.46929 * 239.99374 * 2 1 3 33 33 H 0.97003 * 119.99864 * 180.02562 * 8 7 5 34 34 H 1.00903 * 110.99742 * 321.96684 * 13 3 2 35 35 H 1.08995 * 109.47219 * 294.67437 * 14 13 3 36 36 H 1.08999 * 109.47280 * 54.68113 * 14 13 3 37 37 H 0.96703 * 114.00320 * 59.99934 * 17 15 14 38 38 H 1.07997 * 119.99340 * 359.97438 * 19 18 15 39 39 H 1.07994 * 119.99795 * 180.23157 * 20 19 18 40 40 H 1.07994 * 119.99691 * 179.73098 * 21 20 19 41 41 H 1.08003 * 119.99816 * 359.97438 * 27 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1261 1.4438 -0.0928 5 6 1.4358 2.1889 -1.1614 6 1 0.8267 3.0628 -0.9835 7 6 1.6605 1.7561 -2.4510 8 7 1.1328 2.4072 -3.4645 9 14 2.7134 0.2442 -2.7586 10 1 1.8521 -0.9655 -2.7674 11 1 3.3962 0.3751 -4.0709 12 1 3.7291 0.1208 -1.6823 13 7 1.6551 2.0980 1.2571 14 6 2.6442 1.8368 2.3113 15 6 2.2809 2.6401 3.5617 16 1 2.1904 3.6950 3.3022 17 8 1.0372 2.1701 4.0853 18 6 3.3598 2.4690 4.5998 19 6 3.3879 1.3325 5.3867 20 6 4.3802 1.1733 6.3356 21 6 5.3386 2.1552 6.5050 22 6 5.3075 3.2936 5.7218 23 6 6.3519 4.3643 5.9068 24 9 5.9084 5.2890 6.8582 25 9 7.5455 3.7805 6.3449 26 9 6.5714 5.0169 4.6890 27 6 4.3179 3.4506 4.7692 28 1 -0.3633 -1.0235 -0.0921 29 1 -0.3632 0.5915 -0.8404 30 1 -0.3633 0.4320 0.9325 31 1 1.8933 -0.5139 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.2906 2.1025 -4.3718 34 1 0.7326 1.8100 1.5473 35 1 2.6476 0.7735 2.5509 36 1 3.6334 2.1340 1.9632 37 1 1.0444 1.2366 4.3380 38 1 2.6364 0.5677 5.2576 39 1 4.4043 0.2839 6.9476 40 1 6.1114 2.0328 7.2493 41 1 4.2936 4.3402 4.1572 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000846991528.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:02 Heat of formation + Delta-G solvation = -195.737415 kcal Electronic energy + Delta-G solvation = -26629.440992 eV Core-core repulsion = 22286.343626 eV Total energy + Delta-G solvation = -4343.097366 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -51.22394 -48.74305 -48.69372 -40.91380 -38.92342 -37.56230 -34.42747 -33.35527 -32.91227 -32.30980 -29.32069 -27.65616 -27.10117 -25.02089 -24.11575 -23.43837 -22.01961 -21.35912 -19.56027 -19.43966 -19.39854 -18.59417 -17.66649 -17.16985 -17.12121 -16.91927 -16.26286 -15.74493 -15.58926 -15.50711 -15.18303 -15.13146 -15.04447 -14.92975 -14.85450 -14.84998 -14.64259 -14.34800 -14.21314 -13.77247 -13.69297 -13.20907 -13.00823 -12.84836 -12.55877 -12.46224 -12.35123 -12.19513 -12.03627 -11.67790 -11.29458 -11.25071 -10.94365 -10.65875 -10.23374 -9.92470 -8.98481 -8.22695 -6.22311 -0.10790 0.18541 1.29948 1.35008 1.44074 1.60552 2.34305 2.40979 2.66296 2.94367 3.12143 3.28227 3.36989 3.52869 3.80432 3.86674 4.00359 4.08228 4.18831 4.21752 4.31753 4.36682 4.41572 4.50125 4.57526 4.76506 4.83225 4.86910 4.96609 5.09826 5.13009 5.18196 5.26442 5.30827 5.42275 5.61298 5.74019 5.75030 6.05530 6.71543 6.77543 6.82248 6.85479 7.40931 8.94790 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.017690 B = 0.003101 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.393001 B = 9028.478006 C = 9675.410226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.155 4.155 3 C 0.190 3.810 4 H 0.023 0.977 5 C -0.487 4.487 6 H 0.034 0.966 7 C 0.013 3.987 8 N -0.951 5.951 9 Si 0.943 3.057 10 H -0.266 1.266 11 H -0.303 1.303 12 H -0.252 1.252 13 N -0.682 5.682 14 C 0.036 3.964 15 C 0.162 3.838 16 H 0.100 0.900 17 O -0.558 6.558 18 C -0.119 4.119 19 C -0.078 4.078 20 C -0.111 4.111 21 C -0.075 4.075 22 C -0.194 4.194 23 C 0.509 3.491 24 F -0.181 7.181 25 F -0.177 7.177 26 F -0.184 7.184 27 C -0.075 4.075 28 H 0.055 0.945 29 H 0.040 0.960 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.036 0.964 33 H 0.263 0.737 34 H 0.343 0.657 35 H 0.045 0.955 36 H 0.065 0.935 37 H 0.385 0.615 38 H 0.157 0.843 39 H 0.169 0.831 40 H 0.154 0.846 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.923 -5.677 24.867 27.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.194 4.194 3 C 0.081 3.919 4 H 0.041 0.959 5 C -0.526 4.526 6 H 0.053 0.947 7 C -0.184 4.184 8 N -0.593 5.593 9 Si 0.771 3.229 10 H -0.192 1.192 11 H -0.231 1.231 12 H -0.176 1.176 13 N -0.314 5.314 14 C -0.094 4.094 15 C 0.103 3.897 16 H 0.117 0.883 17 O -0.366 6.366 18 C -0.120 4.120 19 C -0.096 4.096 20 C -0.128 4.128 21 C -0.093 4.093 22 C -0.195 4.195 23 C 0.455 3.545 24 F -0.162 7.162 25 F -0.158 7.158 26 F -0.165 7.165 27 C -0.093 4.093 28 H 0.074 0.926 29 H 0.059 0.941 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.054 0.946 33 H 0.072 0.928 34 H 0.163 0.837 35 H 0.064 0.936 36 H 0.084 0.916 37 H 0.235 0.765 38 H 0.174 0.826 39 H 0.187 0.813 40 H 0.171 0.829 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 9.028 -4.410 24.416 26.403 hybrid contribution 0.635 -1.270 -0.710 1.587 sum 9.663 -5.680 23.706 26.223 Atomic orbital electron populations 1.21575 0.95010 1.00578 1.01931 1.22403 0.97958 0.99143 0.99871 1.19471 0.94760 0.89377 0.88333 0.95950 1.21131 1.29865 1.11453 0.90117 0.94747 1.25686 0.97009 0.99806 0.95894 1.70045 1.47345 1.42570 0.99332 0.85949 0.79818 0.80406 0.76737 1.19176 1.23109 1.17622 1.60343 1.05402 1.63053 1.02627 1.22632 0.96643 0.98039 0.92061 1.20650 0.81371 0.99426 0.88286 0.88251 1.86669 1.33130 1.32131 1.84632 1.20512 0.97151 0.95500 0.98817 1.21502 0.98394 0.96186 0.93538 1.21500 0.93292 0.99750 0.98286 1.21279 0.99234 0.91461 0.97326 1.19980 0.98552 0.97160 1.03809 1.18391 0.81072 0.81430 0.73587 1.93215 1.89263 1.68540 1.65225 1.93183 1.48994 1.83967 1.89661 1.93196 1.95219 1.83027 1.45098 1.20875 0.92963 0.99549 0.95939 0.92581 0.94075 0.91965 0.91391 0.94620 0.92832 0.83695 0.93647 0.91635 0.76527 0.82590 0.81340 0.82877 0.85080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.89 9.40 71.98 0.68 -4.21 16 2 C -0.15 -5.92 5.22 30.59 0.16 -5.76 16 3 C 0.19 8.40 1.93 44.17 0.09 8.49 16 4 H 0.02 1.04 6.76 -2.39 -0.02 1.02 16 5 C -0.49 -27.21 7.83 25.60 0.20 -27.01 16 6 H 0.03 2.20 8.06 -2.91 -0.02 2.17 16 7 C 0.01 0.72 5.42 84.65 0.46 1.18 16 8 N -0.95 -59.45 13.96 21.45 0.30 -59.15 16 9 Si 0.94 44.37 24.32 68.60 1.67 46.04 16 10 H -0.27 -11.83 6.92 99.48 0.69 -11.14 16 11 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 12 H -0.25 -10.96 6.53 99.48 0.65 -10.31 16 13 N -0.68 -25.58 6.21 -495.44 -3.08 -28.65 16 14 C 0.04 1.02 5.16 86.30 0.44 1.46 16 15 C 0.16 3.86 3.45 29.85 0.10 3.96 16 16 H 0.10 2.76 8.00 -2.38 -0.02 2.74 16 17 O -0.56 -12.37 12.80 -148.98 -1.91 -14.28 16 18 C -0.12 -2.33 4.97 -19.87 -0.10 -2.43 16 19 C -0.08 -1.08 9.32 22.27 0.21 -0.87 16 20 C -0.11 -1.26 10.05 22.27 0.22 -1.03 16 21 C -0.08 -1.07 9.40 22.27 0.21 -0.86 16 22 C -0.19 -3.70 5.45 -19.87 -0.11 -3.81 16 23 C 0.51 10.36 3.36 71.24 0.24 10.60 16 24 F -0.18 -3.84 17.30 44.97 0.78 -3.06 16 25 F -0.18 -3.42 16.46 44.97 0.74 -2.68 16 26 F -0.18 -4.27 16.46 44.97 0.74 -3.53 16 27 C -0.07 -1.58 9.02 22.27 0.20 -1.38 16 28 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.04 1.83 6.85 -2.39 -0.02 1.82 16 30 H 0.06 1.99 6.63 -2.39 -0.02 1.98 16 31 H 0.07 2.11 7.50 -2.39 -0.02 2.10 16 32 H 0.04 1.46 3.42 -2.39 -0.01 1.45 16 33 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 34 H 0.34 12.22 6.33 -89.69 -0.57 11.65 16 35 H 0.05 1.08 7.54 -2.39 -0.02 1.07 16 36 H 0.07 2.00 7.92 -2.39 -0.02 1.98 16 37 H 0.38 5.19 7.50 -74.05 -0.56 4.63 16 38 H 0.16 1.26 6.78 -2.91 -0.02 1.24 16 39 H 0.17 0.78 8.06 -2.91 -0.02 0.76 16 40 H 0.15 1.55 7.60 -2.91 -0.02 1.52 16 41 H 0.13 2.85 7.58 -2.91 -0.02 2.83 16 Total: -1.00 -68.92 341.06 2.14 -66.79 By element: Atomic # 1 Polarization: 20.30 SS G_CDS: -0.11 Total: 20.19 kcal Atomic # 6 Polarization: -24.67 SS G_CDS: 3.00 Total: -21.67 kcal Atomic # 7 Polarization: -85.03 SS G_CDS: -2.78 Total: -87.81 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: -1.91 Total: -14.28 kcal Atomic # 9 Polarization: -11.53 SS G_CDS: 2.26 Total: -9.27 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 1.67 Total: 46.04 kcal Total: -68.92 2.14 -66.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846991528.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.950 kcal (2) G-P(sol) polarization free energy of solvation -68.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds