Wall clock time and date at job start Tue Mar 31 2020 13:00:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47333 * 2 1 4 4 H 1.09007 * 109.47173 * 179.23875 * 3 2 1 5 5 C 1.50698 * 109.46999 * 299.23875 * 3 2 1 6 6 H 1.08005 * 119.99585 * 120.00014 * 5 3 2 7 7 C 1.37869 * 120.00264 * 299.99958 * 5 3 2 8 8 N 1.31516 * 120.00184 * 180.02562 * 7 5 3 9 9 Si 1.86801 * 120.00002 * 359.97438 * 7 5 3 10 10 H 1.48498 * 109.47234 * 89.99993 * 9 7 5 11 11 H 1.48501 * 109.47213 * 210.00089 * 9 7 5 12 12 H 1.48498 * 109.47232 * 329.99842 * 9 7 5 13 13 N 1.46901 * 109.47068 * 59.23866 * 3 2 1 14 14 C 1.46909 * 110.99555 * 85.85709 * 13 3 2 15 15 C 1.53005 * 109.46518 * 175.81333 * 14 13 3 16 16 H 1.08995 * 109.47470 * 60.00122 * 15 14 13 17 17 O 1.42897 * 109.47136 * 299.99837 * 15 14 13 18 18 C 1.50699 * 109.46754 * 180.02562 * 15 14 13 19 19 C 1.38255 * 120.00054 * 85.00022 * 18 15 14 20 20 C 1.38215 * 119.99982 * 180.02562 * 19 18 15 21 21 C 1.38257 * 120.00076 * 359.95527 * 20 19 18 22 22 C 1.38207 * 119.99952 * 359.97438 * 21 20 19 23 23 C 1.50707 * 119.99987 * 180.02562 * 22 21 20 24 24 F 1.39898 * 109.46824 * 0.02562 * 23 22 21 25 25 F 1.39898 * 109.46919 * 120.00547 * 23 22 21 26 26 F 1.39894 * 109.47014 * 240.00322 * 23 22 21 27 27 C 1.38220 * 120.00086 * 264.72660 * 18 15 14 28 28 H 1.08995 * 109.46886 * 295.56977 * 1 2 3 29 29 H 1.08996 * 109.47048 * 55.56941 * 1 2 3 30 30 H 1.09001 * 109.47342 * 175.56849 * 1 2 3 31 31 H 1.09004 * 109.47214 * 239.99843 * 2 1 3 32 32 H 1.09006 * 109.47343 * 120.00365 * 2 1 3 33 33 H 0.97003 * 119.99976 * 180.02562 * 8 7 5 34 34 H 1.00891 * 111.00386 * 209.80915 * 13 3 2 35 35 H 1.08998 * 109.46899 * 55.81729 * 14 13 3 36 36 H 1.08993 * 109.47479 * 295.80923 * 14 13 3 37 37 H 0.96698 * 114.00254 * 300.00181 * 17 15 14 38 38 H 1.08000 * 120.00344 * 359.97438 * 19 18 15 39 39 H 1.08003 * 119.99927 * 179.97438 * 20 19 18 40 40 H 1.08000 * 120.00009 * 180.02562 * 21 20 19 41 41 H 1.07996 * 119.99479 * 359.97438 * 27 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4425 0.0137 5 6 1.5532 2.1474 -1.2398 6 1 0.9311 3.0260 -1.1523 7 6 1.9019 1.6709 -2.4856 8 7 1.4774 2.2864 -3.5676 9 14 2.9784 0.1518 -2.6369 10 1 2.1209 -1.0596 -2.6874 11 1 3.7857 0.2390 -3.8802 12 1 3.8844 0.0683 -1.4633 13 7 1.5354 2.1403 1.1901 14 6 2.4158 1.9160 2.3446 15 6 1.9172 2.7397 3.5337 16 1 0.9017 2.4349 3.7865 17 8 1.9266 4.1266 3.1898 18 6 2.8206 2.5102 4.7178 19 6 3.9781 3.2530 4.8585 20 6 4.8069 3.0421 5.9443 21 6 4.4780 2.0889 6.8902 22 6 3.3202 1.3473 6.7503 23 6 2.9614 0.3087 7.7817 24 9 3.9447 0.2802 8.7764 25 9 1.7267 0.6290 8.3561 26 9 2.8795 -0.9469 7.1702 27 6 2.4891 1.5609 5.6663 28 1 -0.3633 0.4435 0.9270 29 1 -0.3633 0.5810 -0.8476 30 1 -0.3634 -1.0246 -0.0794 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.7224 1.9508 -4.4441 34 1 1.4201 3.1262 1.0096 35 1 3.4313 2.2209 2.0918 36 1 2.4086 0.8581 2.6070 37 1 2.8000 4.4673 2.9530 38 1 4.2351 3.9976 4.1196 39 1 5.7114 3.6221 6.0539 40 1 5.1255 1.9244 7.7388 41 1 1.5825 0.9840 5.5588 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000846991530.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:06 Heat of formation + Delta-G solvation = -176.162691 kcal Electronic energy + Delta-G solvation = -26653.755632 eV Core-core repulsion = 22311.507090 eV Total energy + Delta-G solvation = -4342.248542 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.42165 -47.95387 -47.86479 -40.14236 -37.65215 -36.00849 -32.73591 -32.28980 -31.93072 -31.12238 -27.95908 -26.35827 -25.98115 -23.14844 -23.06613 -22.64823 -21.12133 -19.44450 -18.73538 -18.63729 -18.60593 -17.03351 -16.65234 -16.14709 -16.10943 -15.59407 -14.85969 -14.79319 -14.57434 -14.34565 -14.32216 -14.17790 -14.03672 -13.92914 -13.86263 -13.56684 -13.17729 -13.09581 -12.96425 -12.72462 -12.24740 -11.99550 -11.92135 -11.55734 -11.19514 -11.13768 -10.78824 -10.60330 -10.24732 -10.13898 -9.95210 -9.55534 -9.37046 -9.15775 -8.95932 -8.60399 -7.54665 -6.12818 -4.11918 0.58905 0.88168 2.37596 3.11094 3.24393 3.33210 3.35149 3.42450 3.72346 4.14879 4.26396 4.35426 4.38771 4.47521 4.62987 4.80499 4.95814 5.09713 5.19277 5.24980 5.33425 5.42611 5.53670 5.77868 5.85228 5.94140 5.96255 6.14085 6.18938 6.23695 6.39417 6.44741 6.68973 6.88188 7.07318 7.19751 7.46263 7.54993 7.58404 7.86140 8.32038 8.57248 8.92419 9.49481 10.99928 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.019432 B = 0.003054 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.577738 B = 9167.131716 C = 9639.236015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.113 4.113 3 C 0.186 3.814 4 H -0.001 1.001 5 C -0.514 4.514 6 H 0.080 0.920 7 C 0.074 3.926 8 N -0.897 5.897 9 Si 0.886 3.114 10 H -0.277 1.277 11 H -0.298 1.298 12 H -0.270 1.270 13 N -0.670 5.670 14 C 0.033 3.967 15 C 0.147 3.853 16 H 0.118 0.882 17 O -0.547 6.547 18 C -0.107 4.107 19 C -0.080 4.080 20 C -0.117 4.117 21 C -0.078 4.078 22 C -0.182 4.182 23 C 0.509 3.491 24 F -0.179 7.179 25 F -0.176 7.176 26 F -0.175 7.175 27 C -0.059 4.059 28 H 0.054 0.946 29 H 0.068 0.932 30 H 0.020 0.980 31 H 0.041 0.959 32 H 0.029 0.971 33 H 0.264 0.736 34 H 0.347 0.653 35 H 0.025 0.975 36 H 0.073 0.927 37 H 0.370 0.630 38 H 0.132 0.868 39 H 0.135 0.865 40 H 0.137 0.863 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.559 -0.650 22.644 23.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.151 4.151 3 C 0.077 3.923 4 H 0.016 0.984 5 C -0.552 4.552 6 H 0.098 0.902 7 C -0.129 4.129 8 N -0.535 5.535 9 Si 0.717 3.283 10 H -0.204 1.204 11 H -0.225 1.225 12 H -0.195 1.195 13 N -0.303 5.303 14 C -0.098 4.098 15 C 0.088 3.912 16 H 0.136 0.864 17 O -0.352 6.352 18 C -0.108 4.108 19 C -0.098 4.098 20 C -0.135 4.135 21 C -0.096 4.096 22 C -0.184 4.184 23 C 0.455 3.545 24 F -0.160 7.160 25 F -0.158 7.158 26 F -0.157 7.157 27 C -0.077 4.077 28 H 0.073 0.927 29 H 0.087 0.913 30 H 0.039 0.961 31 H 0.059 0.941 32 H 0.048 0.952 33 H 0.074 0.926 34 H 0.167 0.833 35 H 0.043 0.957 36 H 0.092 0.908 37 H 0.218 0.782 38 H 0.149 0.851 39 H 0.153 0.847 40 H 0.155 0.845 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 5.470 -1.232 22.754 23.435 hybrid contribution 1.970 -0.648 -0.350 2.104 sum 7.440 -1.880 22.404 23.682 Atomic orbital electron populations 1.21466 0.95464 0.98349 1.02940 1.21753 0.97477 0.98156 0.97739 1.19587 0.92707 0.91330 0.88677 0.98355 1.21023 1.32515 1.13325 0.88376 0.90247 1.24891 0.95498 0.96720 0.95753 1.69887 1.45354 1.40397 0.97838 0.86873 0.80830 0.83872 0.76743 1.20353 1.22545 1.19537 1.60452 1.48001 1.17282 1.04569 1.22616 0.94794 1.00056 0.92295 1.20994 0.98797 0.81913 0.89503 0.86403 1.86680 1.35107 1.23664 1.89757 1.20712 0.96624 0.96211 0.97239 1.21186 0.93078 0.98030 0.97476 1.21128 1.00134 0.98099 0.94105 1.21001 0.94819 0.94395 0.99403 1.19933 0.99948 1.00755 0.97716 1.18300 0.74509 0.81067 0.80643 1.93156 1.62473 1.96601 1.63805 1.93225 1.44030 1.92628 1.85887 1.93234 1.95989 1.43617 1.82811 1.20745 0.98685 0.96601 0.91677 0.92720 0.91308 0.96100 0.94106 0.95215 0.92578 0.83340 0.95691 0.90837 0.78186 0.85053 0.84668 0.84525 0.84537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.60 9.52 37.16 0.35 -2.24 16 2 C -0.11 -2.46 5.29 -26.73 -0.14 -2.61 16 3 C 0.19 4.21 1.89 -68.86 -0.13 4.08 16 4 H 0.00 -0.02 6.78 -51.93 -0.35 -0.38 16 5 C -0.51 -13.78 7.87 -34.44 -0.27 -14.05 16 6 H 0.08 2.31 7.85 -52.48 -0.41 1.90 16 7 C 0.07 2.06 5.45 -17.82 -0.10 1.97 16 8 N -0.90 -26.73 13.96 55.43 0.77 -25.96 16 9 Si 0.89 21.70 24.38 -169.99 -4.14 17.56 16 10 H -0.28 -6.67 6.86 56.52 0.39 -6.28 16 11 H -0.30 -7.31 7.11 56.52 0.40 -6.91 16 12 H -0.27 -6.38 6.53 56.52 0.37 -6.01 16 13 N -0.67 -12.69 5.62 -107.94 -0.61 -13.30 16 14 C 0.03 0.49 5.22 -3.82 -0.02 0.47 16 15 C 0.15 1.81 3.48 -27.88 -0.10 1.72 16 16 H 0.12 1.50 8.05 -51.93 -0.42 1.08 16 17 O -0.55 -6.88 12.40 -35.23 -0.44 -7.32 16 18 C -0.11 -1.14 5.00 -104.62 -0.52 -1.66 16 19 C -0.08 -0.72 9.33 -39.58 -0.37 -1.09 16 20 C -0.12 -0.93 10.05 -39.58 -0.40 -1.32 16 21 C -0.08 -0.67 9.43 -39.59 -0.37 -1.04 16 22 C -0.18 -1.82 5.37 -104.62 -0.56 -2.38 16 23 C 0.51 5.17 3.32 36.01 0.12 5.29 16 24 F -0.18 -1.74 15.97 2.25 0.04 -1.71 16 25 F -0.18 -1.88 17.23 2.25 0.04 -1.85 16 26 F -0.18 -1.94 17.24 2.25 0.04 -1.90 16 27 C -0.06 -0.62 9.23 -39.58 -0.37 -0.98 16 28 H 0.05 1.07 7.73 -51.93 -0.40 0.67 16 29 H 0.07 1.61 7.09 -51.93 -0.37 1.24 16 30 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.04 0.95 3.26 -51.93 -0.17 0.78 16 32 H 0.03 0.58 7.61 -51.93 -0.40 0.18 16 33 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 34 H 0.35 6.76 7.49 -39.30 -0.29 6.47 16 35 H 0.03 0.37 7.95 -51.93 -0.41 -0.04 16 36 H 0.07 1.12 7.61 -51.93 -0.40 0.72 16 37 H 0.37 3.49 7.39 45.56 0.34 3.82 16 38 H 0.13 0.93 6.61 -52.49 -0.35 0.58 16 39 H 0.14 0.73 8.06 -52.48 -0.42 0.31 16 40 H 0.14 0.93 7.16 -52.49 -0.38 0.56 16 41 H 0.14 1.32 8.06 -52.49 -0.42 0.89 16 LS Contribution 342.90 15.07 5.17 5.17 Total: -1.00 -30.07 342.90 -6.46 -36.53 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -4.45 Total: 6.64 kcal Atomic # 6 Polarization: -10.99 SS G_CDS: -2.88 Total: -13.86 kcal Atomic # 7 Polarization: -39.42 SS G_CDS: 0.17 Total: -39.26 kcal Atomic # 8 Polarization: -6.88 SS G_CDS: -0.44 Total: -7.32 kcal Atomic # 9 Polarization: -5.57 SS G_CDS: 0.11 Total: -5.46 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.14 Total: 17.56 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.07 -6.46 -36.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846991530.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.635 kcal (2) G-P(sol) polarization free energy of solvation -30.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds