Wall clock time and date at job start Tue Mar 31 2020 13:00:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47333 * 2 1 4 4 H 1.09007 * 109.47173 * 179.23875 * 3 2 1 5 5 C 1.50698 * 109.46999 * 299.23875 * 3 2 1 6 6 H 1.08005 * 119.99585 * 120.00014 * 5 3 2 7 7 C 1.37869 * 120.00264 * 299.99958 * 5 3 2 8 8 N 1.31516 * 120.00184 * 180.02562 * 7 5 3 9 9 Si 1.86801 * 120.00002 * 359.97438 * 7 5 3 10 10 H 1.48498 * 109.47234 * 89.99993 * 9 7 5 11 11 H 1.48501 * 109.47213 * 210.00089 * 9 7 5 12 12 H 1.48498 * 109.47232 * 329.99842 * 9 7 5 13 13 N 1.46901 * 109.47068 * 59.23866 * 3 2 1 14 14 C 1.46909 * 110.99555 * 85.85709 * 13 3 2 15 15 C 1.53005 * 109.46518 * 175.81333 * 14 13 3 16 16 H 1.08995 * 109.47470 * 60.00122 * 15 14 13 17 17 O 1.42897 * 109.47136 * 299.99837 * 15 14 13 18 18 C 1.50699 * 109.46754 * 180.02562 * 15 14 13 19 19 C 1.38255 * 120.00054 * 85.00022 * 18 15 14 20 20 C 1.38215 * 119.99982 * 180.02562 * 19 18 15 21 21 C 1.38257 * 120.00076 * 359.95527 * 20 19 18 22 22 C 1.38207 * 119.99952 * 359.97438 * 21 20 19 23 23 C 1.50707 * 119.99987 * 180.02562 * 22 21 20 24 24 F 1.39898 * 109.46824 * 0.02562 * 23 22 21 25 25 F 1.39898 * 109.46919 * 120.00547 * 23 22 21 26 26 F 1.39894 * 109.47014 * 240.00322 * 23 22 21 27 27 C 1.38220 * 120.00086 * 264.72660 * 18 15 14 28 28 H 1.08995 * 109.46886 * 295.56977 * 1 2 3 29 29 H 1.08996 * 109.47048 * 55.56941 * 1 2 3 30 30 H 1.09001 * 109.47342 * 175.56849 * 1 2 3 31 31 H 1.09004 * 109.47214 * 239.99843 * 2 1 3 32 32 H 1.09006 * 109.47343 * 120.00365 * 2 1 3 33 33 H 0.97003 * 119.99976 * 180.02562 * 8 7 5 34 34 H 1.00891 * 111.00386 * 209.80915 * 13 3 2 35 35 H 1.08998 * 109.46899 * 55.81729 * 14 13 3 36 36 H 1.08993 * 109.47479 * 295.80923 * 14 13 3 37 37 H 0.96698 * 114.00254 * 300.00181 * 17 15 14 38 38 H 1.08000 * 120.00344 * 359.97438 * 19 18 15 39 39 H 1.08003 * 119.99927 * 179.97438 * 20 19 18 40 40 H 1.08000 * 120.00009 * 180.02562 * 21 20 19 41 41 H 1.07996 * 119.99479 * 359.97438 * 27 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4425 0.0137 5 6 1.5532 2.1474 -1.2398 6 1 0.9311 3.0260 -1.1523 7 6 1.9019 1.6709 -2.4856 8 7 1.4774 2.2864 -3.5676 9 14 2.9784 0.1518 -2.6369 10 1 2.1209 -1.0596 -2.6874 11 1 3.7857 0.2390 -3.8802 12 1 3.8844 0.0683 -1.4633 13 7 1.5354 2.1403 1.1901 14 6 2.4158 1.9160 2.3446 15 6 1.9172 2.7397 3.5337 16 1 0.9017 2.4349 3.7865 17 8 1.9266 4.1266 3.1898 18 6 2.8206 2.5102 4.7178 19 6 3.9781 3.2530 4.8585 20 6 4.8069 3.0421 5.9443 21 6 4.4780 2.0889 6.8902 22 6 3.3202 1.3473 6.7503 23 6 2.9614 0.3087 7.7817 24 9 3.9447 0.2802 8.7764 25 9 1.7267 0.6290 8.3561 26 9 2.8795 -0.9469 7.1702 27 6 2.4891 1.5609 5.6663 28 1 -0.3633 0.4435 0.9270 29 1 -0.3633 0.5810 -0.8476 30 1 -0.3634 -1.0246 -0.0794 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.7224 1.9508 -4.4441 34 1 1.4201 3.1262 1.0096 35 1 3.4313 2.2209 2.0918 36 1 2.4086 0.8581 2.6070 37 1 2.8000 4.4673 2.9530 38 1 4.2351 3.9976 4.1196 39 1 5.7114 3.6221 6.0539 40 1 5.1255 1.9244 7.7388 41 1 1.5825 0.9840 5.5588 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000846991530.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:06 Heat of formation + Delta-G solvation = -196.513851 kcal Electronic energy + Delta-G solvation = -26654.638125 eV Core-core repulsion = 22311.507090 eV Total energy + Delta-G solvation = -4343.131035 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -51.21597 -48.73642 -48.68256 -40.92116 -38.81353 -37.46432 -34.42749 -33.34867 -32.95032 -32.43174 -29.43653 -27.52461 -27.09114 -24.96394 -24.12042 -23.44007 -22.00686 -21.17790 -19.53666 -19.43564 -19.41370 -18.69303 -17.70587 -17.41574 -17.05352 -16.89116 -15.84487 -15.75298 -15.60397 -15.50887 -15.31107 -15.12358 -15.07602 -14.91818 -14.84467 -14.78194 -14.69116 -14.56509 -13.97760 -13.77971 -13.61910 -13.23276 -12.93148 -12.86480 -12.59736 -12.46480 -12.33226 -12.14953 -11.99461 -11.78585 -11.26031 -11.11979 -10.90174 -10.68370 -10.24081 -9.91292 -9.09435 -8.28616 -6.30850 -0.11289 0.18144 1.30952 1.33673 1.43491 1.60878 2.31277 2.40246 2.66521 2.95393 3.07100 3.27865 3.37730 3.50979 3.80213 3.85200 4.00282 4.07069 4.19135 4.27152 4.35078 4.40273 4.48023 4.57942 4.72419 4.76544 4.83218 4.93058 4.96551 5.11775 5.17482 5.26356 5.35196 5.39936 5.42031 5.64735 5.72798 5.77149 6.01286 6.53639 6.66484 6.74268 6.88349 7.34660 8.87727 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.019432 B = 0.003054 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.577738 B = 9167.131716 C = 9639.236015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.116 4.116 3 C 0.191 3.809 4 H -0.006 1.006 5 C -0.508 4.508 6 H 0.041 0.959 7 C 0.019 3.981 8 N -0.945 5.945 9 Si 0.943 3.057 10 H -0.269 1.269 11 H -0.300 1.300 12 H -0.252 1.252 13 N -0.672 5.672 14 C 0.035 3.965 15 C 0.161 3.839 16 H 0.110 0.890 17 O -0.561 6.561 18 C -0.119 4.119 19 C -0.083 4.083 20 C -0.112 4.112 21 C -0.077 4.077 22 C -0.193 4.193 23 C 0.511 3.489 24 F -0.176 7.176 25 F -0.182 7.182 26 F -0.182 7.182 27 C -0.070 4.070 28 H 0.063 0.937 29 H 0.033 0.967 30 H 0.043 0.957 31 H 0.029 0.971 32 H 0.057 0.943 33 H 0.265 0.735 34 H 0.341 0.659 35 H 0.030 0.970 36 H 0.076 0.924 37 H 0.384 0.616 38 H 0.150 0.850 39 H 0.166 0.834 40 H 0.155 0.845 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.309 -1.459 24.682 26.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.154 4.154 3 C 0.082 3.918 4 H 0.011 0.989 5 C -0.547 4.547 6 H 0.059 0.941 7 C -0.179 4.179 8 N -0.586 5.586 9 Si 0.771 3.229 10 H -0.195 1.195 11 H -0.228 1.228 12 H -0.176 1.176 13 N -0.304 5.304 14 C -0.095 4.095 15 C 0.102 3.898 16 H 0.128 0.872 17 O -0.368 6.368 18 C -0.120 4.120 19 C -0.100 4.100 20 C -0.130 4.130 21 C -0.095 4.095 22 C -0.195 4.195 23 C 0.457 3.543 24 F -0.157 7.157 25 F -0.163 7.163 26 F -0.164 7.164 27 C -0.088 4.088 28 H 0.082 0.918 29 H 0.052 0.948 30 H 0.062 0.938 31 H 0.048 0.952 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.160 0.840 35 H 0.048 0.952 36 H 0.094 0.906 37 H 0.234 0.766 38 H 0.167 0.833 39 H 0.183 0.817 40 H 0.173 0.827 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 7.229 -2.042 24.828 25.939 hybrid contribution 1.409 -0.299 -0.892 1.695 sum 8.638 -2.341 23.935 25.554 Atomic orbital electron populations 1.21369 0.95010 0.99263 1.01841 1.21745 0.97914 0.97249 0.98459 1.19409 0.92126 0.92020 0.88288 0.98899 1.21262 1.30933 1.12112 0.90349 0.94066 1.25666 0.97040 0.99738 0.95451 1.70030 1.47567 1.42527 0.98464 0.85931 0.79421 0.80420 0.77091 1.19520 1.22783 1.17629 1.60376 1.49069 1.16624 1.04334 1.22679 0.94349 1.00821 0.91619 1.20710 0.98789 0.81285 0.89060 0.87203 1.86653 1.36530 1.23745 1.89859 1.20510 0.97260 0.97355 0.96842 1.21481 0.92454 0.97864 0.98247 1.21479 1.00744 0.97677 0.93079 1.21321 0.94318 0.93833 1.00014 1.19985 1.00670 1.01205 0.97596 1.18341 0.74349 0.80895 0.80745 1.93157 1.62286 1.96581 1.63714 1.93213 1.44455 1.92637 1.85999 1.93217 1.96024 1.44186 1.82956 1.20811 0.99049 0.96869 0.92075 0.91777 0.94794 0.93767 0.95237 0.92419 0.92617 0.83968 0.95175 0.90612 0.76638 0.83264 0.81677 0.82726 0.84533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.73 9.52 71.98 0.69 -4.04 16 2 C -0.12 -4.80 5.29 30.59 0.16 -4.63 16 3 C 0.19 8.48 1.89 44.17 0.08 8.56 16 4 H -0.01 -0.29 6.78 -2.38 -0.02 -0.31 16 5 C -0.51 -27.75 7.87 25.60 0.20 -27.55 16 6 H 0.04 2.51 7.85 -2.91 -0.02 2.49 16 7 C 0.02 1.07 5.45 84.65 0.46 1.53 16 8 N -0.95 -57.99 13.96 21.44 0.30 -57.69 16 9 Si 0.94 44.44 24.38 68.60 1.67 46.11 16 10 H -0.27 -12.25 6.86 99.48 0.68 -11.57 16 11 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 12 H -0.25 -11.04 6.53 99.48 0.65 -10.39 16 13 N -0.67 -24.95 5.62 -495.42 -2.78 -27.73 16 14 C 0.04 0.99 5.22 86.30 0.45 1.45 16 15 C 0.16 3.74 3.48 29.85 0.10 3.84 16 16 H 0.11 2.71 8.05 -2.39 -0.02 2.69 16 17 O -0.56 -13.37 12.40 -148.98 -1.85 -15.22 16 18 C -0.12 -2.29 5.00 -19.87 -0.10 -2.39 16 19 C -0.08 -1.25 9.33 22.27 0.21 -1.04 16 20 C -0.11 -1.39 10.05 22.27 0.22 -1.16 16 21 C -0.08 -1.10 9.43 22.27 0.21 -0.89 16 22 C -0.19 -3.50 5.37 -19.87 -0.11 -3.61 16 23 C 0.51 9.66 3.32 71.24 0.24 9.90 16 24 F -0.18 -3.12 15.97 44.97 0.72 -2.40 16 25 F -0.18 -3.71 17.23 44.97 0.78 -2.93 16 26 F -0.18 -3.84 17.24 44.97 0.78 -3.06 16 27 C -0.07 -1.36 9.23 22.27 0.21 -1.15 16 28 H 0.06 2.42 7.73 -2.39 -0.02 2.40 16 29 H 0.03 1.57 7.09 -2.39 -0.02 1.56 16 30 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.03 1.29 3.26 -2.38 -0.01 1.29 16 32 H 0.06 2.07 7.61 -2.38 -0.02 2.06 16 33 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 34 H 0.34 13.35 7.49 -89.70 -0.67 12.68 16 35 H 0.03 0.84 7.95 -2.39 -0.02 0.82 16 36 H 0.08 2.13 7.61 -2.39 -0.02 2.11 16 37 H 0.38 6.54 7.39 -74.06 -0.55 6.00 16 38 H 0.15 1.64 6.61 -2.91 -0.02 1.62 16 39 H 0.17 1.03 8.06 -2.91 -0.02 1.01 16 40 H 0.16 1.60 7.16 -2.91 -0.02 1.58 16 41 H 0.14 2.53 8.06 -2.91 -0.02 2.50 16 Total: -1.00 -65.38 342.90 2.42 -62.96 By element: Atomic # 1 Polarization: 21.39 SS G_CDS: -0.21 Total: 21.17 kcal Atomic # 6 Polarization: -24.23 SS G_CDS: 3.03 Total: -21.21 kcal Atomic # 7 Polarization: -82.94 SS G_CDS: -2.49 Total: -85.42 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: -1.85 Total: -15.22 kcal Atomic # 9 Polarization: -10.66 SS G_CDS: 2.27 Total: -8.39 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 1.67 Total: 46.11 kcal Total: -65.38 2.42 -62.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846991530.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.552 kcal (2) G-P(sol) polarization free energy of solvation -65.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds