Wall clock time and date at job start Tue Mar 31 2020 13:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 109.47128 * 2 1 4 4 H 1.09005 * 109.46658 * 56.28221 * 3 2 1 5 5 C 1.50697 * 109.46977 * 176.27707 * 3 2 1 6 6 H 1.08000 * 119.99479 * 120.00348 * 5 3 2 7 7 C 1.37877 * 120.00332 * 300.00078 * 5 3 2 8 8 N 1.31516 * 119.99984 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00121 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.46936 * 89.99984 * 9 7 5 11 11 H 1.48497 * 109.46975 * 210.00198 * 9 7 5 12 12 H 1.48500 * 109.46924 * 330.00113 * 9 7 5 13 13 N 1.46900 * 109.47067 * 296.28118 * 3 2 1 14 14 C 1.46905 * 110.99618 * 154.13746 * 13 3 2 15 15 C 1.52997 * 109.46774 * 185.21672 * 14 13 3 16 16 H 1.09005 * 109.47114 * 54.54411 * 15 14 13 17 17 O 1.42901 * 109.47562 * 294.54741 * 15 14 13 18 18 C 1.50705 * 109.47150 * 174.54354 * 15 14 13 19 19 C 1.38259 * 119.99348 * 93.16988 * 18 15 14 20 20 C 1.38217 * 119.99523 * 179.81500 * 19 18 15 21 21 C 1.38257 * 119.99912 * 0.41307 * 20 19 18 22 22 C 1.38213 * 119.99989 * 359.81474 * 21 20 19 23 23 C 1.38207 * 119.99943 * 273.44266 * 18 15 14 24 24 C 1.50695 * 120.00558 * 359.97438 * 23 18 15 25 25 F 1.39894 * 109.47566 * 184.98057 * 24 23 18 26 26 F 1.39901 * 109.47059 * 304.98528 * 24 23 18 27 27 F 1.39902 * 109.46945 * 64.97656 * 24 23 18 28 28 H 1.09002 * 109.47417 * 295.43896 * 1 2 3 29 29 H 1.09007 * 109.47228 * 55.43471 * 1 2 3 30 30 H 1.09000 * 109.47322 * 175.43575 * 1 2 3 31 31 H 1.09000 * 109.47233 * 240.00668 * 2 1 3 32 32 H 1.09002 * 109.47359 * 119.99751 * 2 1 3 33 33 H 0.96993 * 119.99747 * 180.02562 * 8 7 5 34 34 H 1.00895 * 110.99814 * 278.08436 * 13 3 2 35 35 H 1.08999 * 109.47152 * 305.21577 * 14 13 3 36 36 H 1.08998 * 109.47522 * 65.21714 * 14 13 3 37 37 H 0.96703 * 113.99210 * 300.00108 * 17 15 14 38 38 H 1.08002 * 120.00415 * 359.97438 * 19 18 15 39 39 H 1.08001 * 119.99893 * 180.20633 * 20 19 18 40 40 H 1.07999 * 120.00103 * 179.79341 * 21 20 19 41 41 H 1.08005 * 119.99926 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6232 1.9752 0.8549 5 6 3.5441 1.4435 0.0923 6 1 4.1330 1.8940 -0.6931 7 6 4.1686 0.8695 1.1792 8 7 3.4515 0.3206 2.1354 9 14 6.0331 0.8713 1.2939 10 1 6.4845 2.0991 1.9968 11 1 6.4837 -0.3254 2.0487 12 1 6.6130 0.8419 -0.0729 13 7 1.6250 2.1086 -1.2418 14 6 1.5302 3.5624 -1.0530 15 6 0.9725 4.2063 -2.3239 16 1 0.0262 3.7330 -2.5859 17 8 1.9038 4.0332 -3.3939 18 6 0.7493 5.6775 -2.0853 19 6 1.7376 6.5882 -2.4101 20 6 1.5313 7.9378 -2.1949 21 6 0.3402 8.3763 -1.6469 22 6 -0.6459 7.4655 -1.3179 23 6 -0.4411 6.1157 -1.5367 24 6 -1.5162 5.1226 -1.1775 25 9 -2.6590 5.8067 -0.7499 26 9 -1.8289 4.3478 -2.2996 27 9 -1.0583 4.2912 -0.1498 28 1 -0.3634 0.4414 0.9280 29 1 -0.3634 0.5831 -0.8463 30 1 -0.3634 -1.0244 -0.0818 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.8909 -0.0829 2.9002 34 1 2.2512 1.8826 -2.0000 35 1 0.8666 3.7775 -0.2155 36 1 2.5206 3.9673 -0.8452 37 1 2.7701 4.4303 -3.2292 38 1 2.6697 6.2452 -2.8344 39 1 2.3020 8.6495 -2.4516 40 1 0.1803 9.4306 -1.4756 41 1 -1.5763 7.8080 -0.8894 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000846994412.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:10 Heat of formation + Delta-G solvation = -179.133107 kcal Electronic energy + Delta-G solvation = -27971.818681 eV Core-core repulsion = 23629.441331 eV Total energy + Delta-G solvation = -4342.377349 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.16427 -47.70229 -47.53988 -39.99062 -37.33268 -35.61954 -32.75294 -32.17756 -31.51293 -30.88568 -27.84432 -26.20285 -25.50639 -23.30330 -22.34422 -22.08309 -21.04425 -19.45012 -18.59527 -18.41588 -18.40672 -16.99541 -16.70902 -15.80234 -15.45609 -15.04075 -14.83842 -14.72576 -14.52501 -14.35947 -14.05459 -13.92360 -13.84848 -13.68748 -13.46533 -13.15264 -13.06839 -12.80067 -12.68715 -12.03462 -11.86888 -11.66749 -11.45618 -11.24607 -11.16451 -10.89808 -10.77718 -10.62427 -10.23831 -10.04314 -9.56326 -9.48402 -9.41042 -9.08265 -8.91330 -8.37512 -7.25308 -5.99454 -4.12658 0.73305 1.02327 2.66207 3.25140 3.27110 3.32983 3.35225 3.70382 4.01087 4.35677 4.40366 4.44407 4.46912 4.63942 4.71191 5.02410 5.15418 5.25175 5.35265 5.39872 5.51983 5.66438 5.78483 5.94827 6.05565 6.13586 6.33103 6.46393 6.48942 6.54268 6.58451 6.77416 7.16490 7.24092 7.46481 7.60694 7.70215 7.78897 8.10862 8.15759 8.33316 8.68128 9.00541 9.54767 11.00649 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.014634 B = 0.004474 C = 0.003881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.955353 B = 6257.480815 C = 7212.803356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.105 4.105 3 C 0.216 3.784 4 H 0.031 0.969 5 C -0.545 4.545 6 H 0.053 0.947 7 C 0.067 3.933 8 N -0.884 5.884 9 Si 0.888 3.112 10 H -0.282 1.282 11 H -0.286 1.286 12 H -0.275 1.275 13 N -0.681 5.681 14 C 0.036 3.964 15 C 0.123 3.877 16 H 0.126 0.874 17 O -0.546 6.546 18 C -0.054 4.054 19 C -0.116 4.116 20 C -0.084 4.084 21 C -0.129 4.129 22 C -0.071 4.071 23 C -0.177 4.177 24 C 0.505 3.495 25 F -0.181 7.181 26 F -0.172 7.172 27 F -0.161 7.161 28 H 0.035 0.965 29 H 0.051 0.949 30 H 0.024 0.976 31 H 0.031 0.969 32 H 0.089 0.911 33 H 0.261 0.739 34 H 0.333 0.667 35 H 0.083 0.917 36 H 0.031 0.969 37 H 0.369 0.631 38 H 0.134 0.866 39 H 0.132 0.868 40 H 0.133 0.867 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.272 15.545 -7.665 18.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.143 4.143 3 C 0.108 3.892 4 H 0.049 0.951 5 C -0.584 4.584 6 H 0.071 0.929 7 C -0.135 4.135 8 N -0.522 5.522 9 Si 0.716 3.284 10 H -0.208 1.208 11 H -0.211 1.211 12 H -0.200 1.200 13 N -0.311 5.311 14 C -0.094 4.094 15 C 0.064 3.936 16 H 0.143 0.857 17 O -0.351 6.351 18 C -0.055 4.055 19 C -0.134 4.134 20 C -0.102 4.102 21 C -0.147 4.147 22 C -0.089 4.089 23 C -0.179 4.179 24 C 0.451 3.549 25 F -0.162 7.162 26 F -0.153 7.153 27 F -0.142 7.142 28 H 0.054 0.946 29 H 0.070 0.930 30 H 0.043 0.957 31 H 0.049 0.951 32 H 0.108 0.892 33 H 0.071 0.929 34 H 0.150 0.850 35 H 0.101 0.899 36 H 0.049 0.951 37 H 0.217 0.783 38 H 0.151 0.849 39 H 0.149 0.851 40 H 0.151 0.849 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -8.469 14.971 -7.619 18.813 hybrid contribution 2.333 0.439 0.644 2.460 sum -6.136 15.410 -6.975 17.994 Atomic orbital electron populations 1.21718 0.98990 0.98474 1.00448 1.21483 0.92114 0.99098 1.01652 1.19143 0.92565 0.91233 0.86257 0.95108 1.21851 0.92664 1.37955 1.05967 0.92925 1.24933 0.97938 0.94992 0.95650 1.69881 1.34910 1.37821 1.09604 0.86663 0.86140 0.77510 0.78063 1.20847 1.21132 1.19994 1.60787 1.55919 1.04619 1.09790 1.22582 0.99643 0.91737 0.95456 1.21525 0.95247 0.87930 0.88928 0.85674 1.86657 1.25550 1.80622 1.42270 1.20574 0.92281 0.98261 0.94396 1.20932 0.98941 0.92823 1.00674 1.21356 0.97140 0.95671 0.96031 1.21130 0.93622 0.99811 1.00126 1.21000 0.99920 0.91071 0.96952 1.19802 0.95304 0.94161 1.08633 1.18317 0.80953 0.80460 0.75144 1.93142 1.53271 1.79572 1.90226 1.93162 1.93291 1.76671 1.52167 1.93264 1.88056 1.73184 1.59736 0.94608 0.93039 0.95668 0.95057 0.89231 0.92878 0.85012 0.89894 0.95082 0.78333 0.84851 0.85050 0.84943 0.84466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 9.85 37.16 0.37 -2.61 16 2 C -0.10 -2.56 5.44 -26.73 -0.15 -2.71 16 3 C 0.22 5.37 1.99 -68.86 -0.14 5.23 16 4 H 0.03 0.86 7.70 -51.93 -0.40 0.46 16 5 C -0.55 -14.58 8.47 -34.44 -0.29 -14.88 16 6 H 0.05 1.39 7.73 -52.49 -0.41 0.98 16 7 C 0.07 1.84 5.30 -17.82 -0.09 1.74 16 8 N -0.88 -25.00 11.30 55.43 0.63 -24.38 16 9 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 13 N -0.68 -14.40 5.54 -107.95 -0.60 -15.00 16 14 C 0.04 0.67 4.96 -3.82 -0.02 0.65 16 15 C 0.12 1.90 2.84 -27.88 -0.08 1.82 16 16 H 0.13 2.11 5.42 -51.93 -0.28 1.82 16 17 O -0.55 -8.04 12.65 -35.23 -0.45 -8.48 16 18 C -0.05 -0.72 5.02 -104.62 -0.53 -1.24 16 19 C -0.12 -1.26 9.31 -39.58 -0.37 -1.63 16 20 C -0.08 -0.75 10.05 -39.58 -0.40 -1.15 16 21 C -0.13 -1.13 10.05 -39.58 -0.40 -1.53 16 22 C -0.07 -0.74 9.43 -39.58 -0.37 -1.12 16 23 C -0.18 -2.29 5.38 -104.63 -0.56 -2.85 16 24 C 0.51 7.10 2.85 36.00 0.10 7.20 16 25 F -0.18 -2.32 15.99 2.25 0.04 -2.28 16 26 F -0.17 -2.54 14.93 2.25 0.03 -2.50 16 27 F -0.16 -2.63 14.23 2.25 0.03 -2.60 16 28 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.05 1.07 7.59 -51.92 -0.39 0.68 16 30 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.09 2.42 5.98 -51.93 -0.31 2.11 16 33 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 34 H 0.33 7.07 8.10 -39.29 -0.32 6.75 16 35 H 0.08 1.62 5.26 -51.93 -0.27 1.35 16 36 H 0.03 0.60 8.11 -51.93 -0.42 0.17 16 37 H 0.37 4.22 7.32 45.56 0.33 4.55 16 38 H 0.13 1.20 6.43 -52.49 -0.34 0.86 16 39 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 40 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 41 H 0.14 1.18 7.17 -52.48 -0.38 0.81 16 LS Contribution 342.08 15.07 5.16 5.16 Total: -1.00 -29.48 342.08 -7.54 -37.02 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -4.43 Total: 10.16 kcal Atomic # 6 Polarization: -10.12 SS G_CDS: -2.92 Total: -13.05 kcal Atomic # 7 Polarization: -39.41 SS G_CDS: 0.03 Total: -39.38 kcal Atomic # 8 Polarization: -8.04 SS G_CDS: -0.45 Total: -8.48 kcal Atomic # 9 Polarization: -7.48 SS G_CDS: 0.10 Total: -7.38 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -29.48 -7.54 -37.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846994412.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.117 kcal (2) G-P(sol) polarization free energy of solvation -29.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds