Wall clock time and date at job start Tue Mar 31 2020 13:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 109.47128 * 2 1 4 4 H 1.09005 * 109.46658 * 56.28221 * 3 2 1 5 5 C 1.50697 * 109.46977 * 176.27707 * 3 2 1 6 6 H 1.08000 * 119.99479 * 120.00348 * 5 3 2 7 7 C 1.37877 * 120.00332 * 300.00078 * 5 3 2 8 8 N 1.31516 * 119.99984 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00121 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.46936 * 89.99984 * 9 7 5 11 11 H 1.48497 * 109.46975 * 210.00198 * 9 7 5 12 12 H 1.48500 * 109.46924 * 330.00113 * 9 7 5 13 13 N 1.46900 * 109.47067 * 296.28118 * 3 2 1 14 14 C 1.46905 * 110.99618 * 154.13746 * 13 3 2 15 15 C 1.52997 * 109.46774 * 185.21672 * 14 13 3 16 16 H 1.09005 * 109.47114 * 54.54411 * 15 14 13 17 17 O 1.42901 * 109.47562 * 294.54741 * 15 14 13 18 18 C 1.50705 * 109.47150 * 174.54354 * 15 14 13 19 19 C 1.38259 * 119.99348 * 93.16988 * 18 15 14 20 20 C 1.38217 * 119.99523 * 179.81500 * 19 18 15 21 21 C 1.38257 * 119.99912 * 0.41307 * 20 19 18 22 22 C 1.38213 * 119.99989 * 359.81474 * 21 20 19 23 23 C 1.38207 * 119.99943 * 273.44266 * 18 15 14 24 24 C 1.50695 * 120.00558 * 359.97438 * 23 18 15 25 25 F 1.39894 * 109.47566 * 184.98057 * 24 23 18 26 26 F 1.39901 * 109.47059 * 304.98528 * 24 23 18 27 27 F 1.39902 * 109.46945 * 64.97656 * 24 23 18 28 28 H 1.09002 * 109.47417 * 295.43896 * 1 2 3 29 29 H 1.09007 * 109.47228 * 55.43471 * 1 2 3 30 30 H 1.09000 * 109.47322 * 175.43575 * 1 2 3 31 31 H 1.09000 * 109.47233 * 240.00668 * 2 1 3 32 32 H 1.09002 * 109.47359 * 119.99751 * 2 1 3 33 33 H 0.96993 * 119.99747 * 180.02562 * 8 7 5 34 34 H 1.00895 * 110.99814 * 278.08436 * 13 3 2 35 35 H 1.08999 * 109.47152 * 305.21577 * 14 13 3 36 36 H 1.08998 * 109.47522 * 65.21714 * 14 13 3 37 37 H 0.96703 * 113.99210 * 300.00108 * 17 15 14 38 38 H 1.08002 * 120.00415 * 359.97438 * 19 18 15 39 39 H 1.08001 * 119.99893 * 180.20633 * 20 19 18 40 40 H 1.07999 * 120.00103 * 179.79341 * 21 20 19 41 41 H 1.08005 * 119.99926 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6232 1.9752 0.8549 5 6 3.5441 1.4435 0.0923 6 1 4.1330 1.8940 -0.6931 7 6 4.1686 0.8695 1.1792 8 7 3.4515 0.3206 2.1354 9 14 6.0331 0.8713 1.2939 10 1 6.4845 2.0991 1.9968 11 1 6.4837 -0.3254 2.0487 12 1 6.6130 0.8419 -0.0729 13 7 1.6250 2.1086 -1.2418 14 6 1.5302 3.5624 -1.0530 15 6 0.9725 4.2063 -2.3239 16 1 0.0262 3.7330 -2.5859 17 8 1.9038 4.0332 -3.3939 18 6 0.7493 5.6775 -2.0853 19 6 1.7376 6.5882 -2.4101 20 6 1.5313 7.9378 -2.1949 21 6 0.3402 8.3763 -1.6469 22 6 -0.6459 7.4655 -1.3179 23 6 -0.4411 6.1157 -1.5367 24 6 -1.5162 5.1226 -1.1775 25 9 -2.6590 5.8067 -0.7499 26 9 -1.8289 4.3478 -2.2996 27 9 -1.0583 4.2912 -0.1498 28 1 -0.3634 0.4414 0.9280 29 1 -0.3634 0.5831 -0.8463 30 1 -0.3634 -1.0244 -0.0818 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.8909 -0.0829 2.9002 34 1 2.2512 1.8826 -2.0000 35 1 0.8666 3.7775 -0.2155 36 1 2.5206 3.9673 -0.8452 37 1 2.7701 4.4303 -3.2292 38 1 2.6697 6.2452 -2.8344 39 1 2.3020 8.6495 -2.4516 40 1 0.1803 9.4306 -1.4756 41 1 -1.5763 7.8080 -0.8894 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000846994412.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:09 Heat of formation + Delta-G solvation = -197.963424 kcal Electronic energy + Delta-G solvation = -27972.635224 eV Core-core repulsion = 23629.441331 eV Total energy + Delta-G solvation = -4343.193893 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -51.28601 -48.78979 -48.72184 -40.90959 -38.62708 -37.29835 -34.35947 -33.46174 -32.79878 -32.22201 -29.37889 -27.67025 -26.76570 -24.90151 -23.73215 -23.14267 -22.19454 -21.36567 -19.59482 -19.54927 -19.50111 -18.77518 -17.97708 -16.91992 -16.85162 -16.49472 -15.95976 -15.91763 -15.67122 -15.57063 -15.44754 -15.19186 -15.02506 -14.94717 -14.85415 -14.61052 -14.34046 -14.00357 -13.76656 -13.62172 -13.35174 -13.11106 -13.03827 -12.75703 -12.71212 -12.50499 -12.27605 -12.07336 -11.95310 -11.66768 -11.52363 -11.11433 -10.94966 -10.46983 -10.22392 -9.87377 -9.06886 -8.05326 -6.28171 -0.10111 0.22374 1.37992 1.40105 1.49417 1.61971 2.39895 2.46726 2.67308 2.98001 3.13694 3.27343 3.36158 3.38283 3.80248 3.94311 4.02157 4.15685 4.27506 4.38890 4.40834 4.57035 4.60951 4.74990 4.79372 4.86049 4.91877 4.96762 5.15619 5.20810 5.34774 5.37965 5.40053 5.50701 5.61471 5.76237 5.79812 6.08626 6.18299 6.36011 6.66547 6.80407 7.01230 7.43384 8.91686 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.014634 B = 0.004474 C = 0.003881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.955353 B = 6257.480815 C = 7212.803356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.101 4.101 3 C 0.223 3.777 4 H -0.005 1.005 5 C -0.558 4.558 6 H 0.053 0.947 7 C 0.019 3.981 8 N -0.912 5.912 9 Si 0.953 3.047 10 H -0.277 1.277 11 H -0.284 1.284 12 H -0.268 1.268 13 N -0.676 5.676 14 C 0.042 3.958 15 C 0.140 3.860 16 H 0.108 0.892 17 O -0.553 6.553 18 C -0.079 4.079 19 C -0.122 4.122 20 C -0.078 4.078 21 C -0.118 4.118 22 C -0.078 4.078 23 C -0.194 4.194 24 C 0.501 3.499 25 F -0.175 7.175 26 F -0.180 7.180 27 F -0.181 7.181 28 H 0.028 0.972 29 H 0.055 0.945 30 H 0.047 0.953 31 H 0.029 0.971 32 H 0.062 0.938 33 H 0.262 0.738 34 H 0.334 0.666 35 H 0.069 0.931 36 H 0.023 0.977 37 H 0.383 0.617 38 H 0.149 0.851 39 H 0.167 0.833 40 H 0.169 0.831 41 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.376 17.856 -8.675 20.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.140 4.140 3 C 0.115 3.885 4 H 0.013 0.987 5 C -0.597 4.597 6 H 0.071 0.929 7 C -0.181 4.181 8 N -0.551 5.551 9 Si 0.779 3.221 10 H -0.203 1.203 11 H -0.210 1.210 12 H -0.192 1.192 13 N -0.306 5.306 14 C -0.089 4.089 15 C 0.080 3.920 16 H 0.126 0.874 17 O -0.360 6.360 18 C -0.080 4.080 19 C -0.140 4.140 20 C -0.096 4.096 21 C -0.136 4.136 22 C -0.096 4.096 23 C -0.195 4.195 24 C 0.447 3.553 25 F -0.156 7.156 26 F -0.161 7.161 27 F -0.162 7.162 28 H 0.047 0.953 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.047 0.953 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.151 0.849 35 H 0.087 0.913 36 H 0.041 0.959 37 H 0.233 0.767 38 H 0.167 0.833 39 H 0.184 0.816 40 H 0.187 0.813 41 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -7.574 17.299 -8.646 20.769 hybrid contribution 2.021 -0.194 0.951 2.242 sum -5.553 17.105 -7.695 19.561 Atomic orbital electron populations 1.21577 0.96721 0.99908 1.00214 1.21356 0.94135 0.98443 1.00078 1.18904 0.91726 0.91389 0.86507 0.98724 1.22140 0.93695 1.37827 1.06072 0.92865 1.25705 1.02391 0.94687 0.95355 1.70021 1.36623 1.38440 1.10057 0.85634 0.80743 0.77486 0.78220 1.20322 1.20978 1.19246 1.60700 1.55358 1.06374 1.08123 1.22563 0.99039 0.90094 0.97159 1.21083 0.94286 0.89579 0.87054 0.87427 1.86617 1.26467 1.81092 1.41862 1.20388 0.93669 0.97021 0.96910 1.21229 0.98847 0.93569 1.00376 1.21797 0.97988 0.95262 0.94522 1.21607 0.92652 1.01251 0.98052 1.21300 1.01256 0.90162 0.96841 1.19845 0.94861 0.94904 1.09931 1.18598 0.81679 0.80525 0.74482 1.93141 1.53042 1.79262 1.90150 1.93138 1.93422 1.77078 1.52471 1.93221 1.88339 1.73984 1.60642 0.95315 0.92629 0.93442 0.95258 0.91970 0.92900 0.84938 0.91309 0.95892 0.76669 0.83331 0.81569 0.81344 0.82956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.48 9.85 71.98 0.71 -4.77 16 2 C -0.10 -5.08 5.44 30.60 0.17 -4.91 16 3 C 0.22 11.47 1.99 44.17 0.09 11.56 16 4 H -0.01 -0.30 7.70 -2.38 -0.02 -0.32 16 5 C -0.56 -30.35 8.47 25.60 0.22 -30.13 16 6 H 0.05 2.82 7.73 -2.91 -0.02 2.80 16 7 C 0.02 1.02 5.30 84.65 0.45 1.47 16 8 N -0.91 -52.74 11.30 21.45 0.24 -52.50 16 9 Si 0.95 43.17 29.54 68.60 2.03 45.19 16 10 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 11 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 12 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 13 N -0.68 -29.33 5.54 -495.43 -2.75 -32.07 16 14 C 0.04 1.59 4.96 86.30 0.43 2.02 16 15 C 0.14 4.36 2.84 29.85 0.08 4.44 16 16 H 0.11 3.73 5.42 -2.38 -0.01 3.72 16 17 O -0.55 -15.99 12.65 -148.98 -1.88 -17.87 16 18 C -0.08 -2.04 5.02 -19.87 -0.10 -2.14 16 19 C -0.12 -2.39 9.31 22.27 0.21 -2.18 16 20 C -0.08 -1.09 10.05 22.27 0.22 -0.87 16 21 C -0.12 -1.61 10.05 22.27 0.22 -1.38 16 22 C -0.08 -1.45 9.43 22.27 0.21 -1.24 16 23 C -0.19 -4.90 5.38 -19.87 -0.11 -5.01 16 24 C 0.50 14.36 2.85 71.23 0.20 14.57 16 25 F -0.17 -4.47 15.99 44.97 0.72 -3.75 16 26 F -0.18 -5.48 14.93 44.97 0.67 -4.81 16 27 F -0.18 -6.17 14.23 44.97 0.64 -5.53 16 28 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.05 2.33 7.59 -2.38 -0.02 2.31 16 30 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.06 3.47 5.98 -2.39 -0.01 3.45 16 33 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 34 H 0.33 14.36 8.10 -89.70 -0.73 13.64 16 35 H 0.07 2.83 5.26 -2.39 -0.01 2.82 16 36 H 0.02 0.90 8.11 -2.39 -0.02 0.88 16 37 H 0.38 8.34 7.32 -74.06 -0.54 7.80 16 38 H 0.15 2.30 6.43 -2.91 -0.02 2.28 16 39 H 0.17 1.18 8.06 -2.91 -0.02 1.15 16 40 H 0.17 1.09 8.06 -2.91 -0.02 1.06 16 41 H 0.15 2.28 7.17 -2.91 -0.02 2.26 16 Total: -1.00 -65.10 342.08 2.49 -62.61 By element: Atomic # 1 Polarization: 27.48 SS G_CDS: -0.18 Total: 27.30 kcal Atomic # 6 Polarization: -21.57 SS G_CDS: 3.00 Total: -18.57 kcal Atomic # 7 Polarization: -82.07 SS G_CDS: -2.50 Total: -84.57 kcal Atomic # 8 Polarization: -15.99 SS G_CDS: -1.88 Total: -17.87 kcal Atomic # 9 Polarization: -16.12 SS G_CDS: 2.03 Total: -14.09 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.19 kcal Total: -65.10 2.49 -62.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846994412.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.358 kcal (2) G-P(sol) polarization free energy of solvation -65.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds