Wall clock time and date at job start Tue Mar 31 2020 13:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52992 * 109.47267 * 2 1 4 4 H 1.09011 * 109.47377 * 54.84658 * 3 2 1 5 5 C 1.50702 * 109.47603 * 174.84692 * 3 2 1 6 6 H 1.08001 * 120.00119 * 119.99734 * 5 3 2 7 7 C 1.37877 * 119.99735 * 300.00560 * 5 3 2 8 8 N 1.31516 * 120.00142 * 179.97438 * 7 5 3 9 9 Si 1.86794 * 120.00105 * 359.97438 * 7 5 3 10 10 H 1.48504 * 109.47020 * 90.00389 * 9 7 5 11 11 H 1.48506 * 109.47339 * 209.99988 * 9 7 5 12 12 H 1.48498 * 109.47478 * 330.00380 * 9 7 5 13 13 N 1.46900 * 109.47357 * 294.84897 * 3 2 1 14 14 C 1.46908 * 111.00279 * 153.78873 * 13 3 2 15 15 C 1.52996 * 109.46896 * 174.69220 * 14 13 3 16 16 H 1.08999 * 109.47521 * 304.99669 * 15 14 13 17 17 O 1.42894 * 109.47195 * 65.00383 * 15 14 13 18 18 C 1.50702 * 109.46897 * 185.00301 * 15 14 13 19 19 C 1.38267 * 119.99638 * 264.98022 * 18 15 14 20 20 C 1.38220 * 119.99464 * 179.97438 * 19 18 15 21 21 C 1.38251 * 120.00278 * 359.97438 * 20 19 18 22 22 C 1.38217 * 120.00146 * 359.81099 * 21 20 19 23 23 C 1.38204 * 120.00462 * 84.99661 * 18 15 14 24 24 C 1.50705 * 119.99921 * 359.97438 * 23 18 15 25 25 F 1.39899 * 109.47399 * 179.97438 * 24 23 18 26 26 F 1.39908 * 109.47068 * 59.99741 * 24 23 18 27 27 F 1.39895 * 109.47000 * 299.99750 * 24 23 18 28 28 H 1.09005 * 109.47154 * 65.98302 * 1 2 3 29 29 H 1.09001 * 109.47098 * 185.98084 * 1 2 3 30 30 H 1.09001 * 109.46825 * 305.98272 * 1 2 3 31 31 H 1.08999 * 109.47305 * 240.00065 * 2 1 3 32 32 H 1.08995 * 109.46920 * 120.00089 * 2 1 3 33 33 H 0.96996 * 120.00473 * 179.97438 * 8 7 5 34 34 H 1.00904 * 110.99799 * 29.83683 * 13 3 2 35 35 H 1.09003 * 109.46934 * 54.69431 * 14 13 3 36 36 H 1.08995 * 109.47133 * 294.69260 * 14 13 3 37 37 H 0.96702 * 114.00450 * 59.99906 * 17 15 14 38 38 H 1.07991 * 120.00134 * 359.97216 * 19 18 15 39 39 H 1.07999 * 119.99515 * 179.97438 * 20 19 18 40 40 H 1.07999 * 119.99936 * 179.97438 * 21 20 19 41 41 H 1.07993 * 120.00064 * 180.22904 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6033 1.9823 0.8403 5 6 3.5416 1.4444 0.1276 6 1 4.1489 1.8883 -0.6474 7 6 4.1402 0.8794 1.2337 8 7 5.4507 0.8807 1.3449 9 14 3.0899 0.1122 2.5744 10 1 2.8689 -1.3242 2.2689 11 1 3.7844 0.2391 3.8809 12 1 1.7815 0.8114 2.6393 13 7 1.6546 2.0981 -1.2567 14 6 1.5474 3.5527 -1.0804 15 6 1.2755 4.2117 -2.4341 16 1 2.0478 3.9158 -3.1441 17 8 -0.0024 3.7946 -2.9188 18 6 1.2876 5.7103 -2.2746 19 6 0.1022 6.3938 -2.0757 20 6 0.1134 7.7682 -1.9289 21 6 1.3097 8.4592 -1.9804 22 6 2.4950 7.7754 -2.1748 23 6 2.4833 6.4013 -2.3275 24 6 3.7752 5.6562 -2.5440 25 9 4.8398 6.5637 -2.5605 26 9 3.7228 4.9773 -3.7662 27 9 3.9623 4.7360 -1.5071 28 1 -0.3634 0.4183 -0.9387 29 1 -0.3633 -1.0221 0.1071 30 1 -0.3633 0.6038 0.8316 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 5.8718 0.4835 2.1232 34 1 0.7940 1.7131 -1.6163 35 1 2.4803 3.9385 -0.6693 36 1 0.7289 3.7764 -0.3964 37 1 -0.7387 4.0255 -2.3361 38 1 -0.8322 5.8540 -2.0351 39 1 -0.8125 8.3021 -1.7740 40 1 1.3183 9.5331 -1.8661 41 1 3.4299 8.3148 -2.2113 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000846994413.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:14 Heat of formation + Delta-G solvation = -164.711520 kcal Electronic energy + Delta-G solvation = -28151.407183 eV Core-core repulsion = 23809.655201 eV Total energy + Delta-G solvation = -4341.751982 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.97322 -47.52003 -47.34085 -40.01385 -37.51427 -36.04331 -32.76259 -32.15614 -31.70485 -31.23049 -28.00306 -26.60193 -25.68427 -23.28571 -22.34983 -22.11472 -21.06895 -19.83802 -18.55571 -18.28387 -18.18714 -17.01264 -16.74542 -15.83307 -15.67738 -15.12167 -15.06973 -14.69255 -14.44584 -14.41023 -13.95591 -13.87955 -13.81408 -13.62416 -13.47283 -13.28581 -13.13830 -12.84771 -12.69652 -12.41269 -12.27662 -11.88256 -11.74808 -11.52951 -11.29528 -11.06695 -10.83831 -10.65531 -10.27188 -10.04906 -9.91838 -9.43397 -9.39693 -9.15540 -8.99442 -8.47750 -7.36302 -5.98676 -3.95185 0.74436 1.01282 2.79923 3.27202 3.27770 3.37450 3.39936 3.85299 4.12558 4.32732 4.37797 4.44178 4.60374 4.62096 4.72283 4.98709 5.15428 5.22852 5.29721 5.35945 5.43776 5.54058 5.62500 5.76041 5.83492 5.94275 5.97253 5.97961 6.10564 6.32156 6.41637 6.48998 6.52149 6.62669 6.73416 6.82050 7.19194 7.58017 7.75863 7.96641 8.30261 8.80881 9.15878 9.64188 11.14785 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.014890 B = 0.004862 C = 0.004195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.951281 B = 5757.323304 C = 6673.121767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.135 4.135 3 C 0.190 3.810 4 H -0.001 1.001 5 C -0.493 4.493 6 H 0.083 0.917 7 C 0.066 3.934 8 N -0.900 5.900 9 Si 0.880 3.120 10 H -0.279 1.279 11 H -0.298 1.298 12 H -0.269 1.269 13 N -0.667 5.667 14 C 0.030 3.970 15 C 0.128 3.872 16 H 0.127 0.873 17 O -0.547 6.547 18 C -0.057 4.057 19 C -0.118 4.118 20 C -0.086 4.086 21 C -0.128 4.128 22 C -0.070 4.070 23 C -0.172 4.172 24 C 0.501 3.499 25 F -0.181 7.181 26 F -0.174 7.174 27 F -0.148 7.148 28 H 0.051 0.949 29 H 0.045 0.955 30 H 0.044 0.956 31 H 0.069 0.931 32 H 0.054 0.946 33 H 0.262 0.738 34 H 0.324 0.676 35 H 0.107 0.893 36 H 0.018 0.982 37 H 0.366 0.634 38 H 0.132 0.868 39 H 0.131 0.869 40 H 0.133 0.867 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.689 14.551 -6.797 19.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.173 4.173 3 C 0.082 3.918 4 H 0.016 0.984 5 C -0.532 4.532 6 H 0.101 0.899 7 C -0.135 4.135 8 N -0.539 5.539 9 Si 0.711 3.289 10 H -0.206 1.206 11 H -0.226 1.226 12 H -0.195 1.195 13 N -0.298 5.298 14 C -0.100 4.100 15 C 0.069 3.931 16 H 0.145 0.855 17 O -0.351 6.351 18 C -0.058 4.058 19 C -0.136 4.136 20 C -0.104 4.104 21 C -0.146 4.146 22 C -0.088 4.088 23 C -0.174 4.174 24 C 0.446 3.554 25 F -0.163 7.163 26 F -0.156 7.156 27 F -0.129 7.129 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.088 0.912 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.142 0.858 35 H 0.125 0.875 36 H 0.036 0.964 37 H 0.214 0.786 38 H 0.150 0.850 39 H 0.149 0.851 40 H 0.151 0.849 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -10.481 14.258 -7.413 19.185 hybrid contribution -1.355 -0.296 1.845 2.308 sum -11.835 13.962 -5.568 19.131 Atomic orbital electron populations 1.21916 0.98224 1.00557 1.00726 1.22119 0.92939 1.00405 1.01866 1.19628 0.97012 0.89198 0.85951 0.98366 1.21055 0.88974 1.37094 1.06051 0.89878 1.24954 0.94717 0.96078 0.97705 1.69888 1.08598 1.45874 1.29545 0.86976 0.80638 0.79828 0.81432 1.20611 1.22562 1.19466 1.60370 1.36870 1.01074 1.31520 1.22833 1.02658 0.91383 0.93129 1.21404 0.86974 0.86232 0.98520 0.85522 1.86676 1.15632 1.82195 1.50637 1.20509 0.92434 0.97634 0.95242 1.20885 0.97390 0.94499 1.00797 1.21328 0.98448 0.94111 0.96544 1.21140 0.91923 1.00365 1.01138 1.21040 0.99762 0.92146 0.95897 1.19876 0.92150 0.95133 1.10216 1.18358 0.84210 0.77820 0.74964 1.93141 1.59558 1.67242 1.96316 1.93181 1.96392 1.80974 1.45012 1.93322 1.95384 1.66735 1.57474 0.92982 0.93614 0.93732 0.91209 0.92828 0.92812 0.85807 0.87472 0.96393 0.78637 0.85003 0.85111 0.84924 0.84322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.69 9.63 37.16 0.36 -2.33 16 2 C -0.14 -2.93 5.01 -26.73 -0.13 -3.06 16 3 C 0.19 4.50 1.62 -68.87 -0.11 4.38 16 4 H 0.00 -0.03 6.90 -51.92 -0.36 -0.39 16 5 C -0.49 -14.04 9.18 -34.44 -0.32 -14.36 16 6 H 0.08 2.63 8.06 -52.49 -0.42 2.21 16 7 C 0.07 1.94 5.45 -17.82 -0.10 1.84 16 8 N -0.90 -27.95 13.96 55.43 0.77 -27.17 16 9 Si 0.88 22.10 24.41 -169.99 -4.15 17.95 16 10 H -0.28 -6.82 6.83 56.52 0.39 -6.44 16 11 H -0.30 -7.52 7.11 56.52 0.40 -7.12 16 12 H -0.27 -6.47 6.53 56.52 0.37 -6.10 16 13 N -0.67 -13.69 6.27 -107.95 -0.68 -14.37 16 14 C 0.03 0.54 4.81 -3.82 -0.02 0.52 16 15 C 0.13 1.96 2.80 -27.88 -0.08 1.88 16 16 H 0.13 2.21 5.75 -51.93 -0.30 1.92 16 17 O -0.55 -7.41 12.60 -35.23 -0.44 -7.85 16 18 C -0.06 -0.76 5.03 -104.62 -0.53 -1.28 16 19 C -0.12 -1.21 9.31 -39.58 -0.37 -1.58 16 20 C -0.09 -0.74 10.05 -39.58 -0.40 -1.14 16 21 C -0.13 -1.12 10.05 -39.58 -0.40 -1.52 16 22 C -0.07 -0.77 9.43 -39.58 -0.37 -1.14 16 23 C -0.17 -2.34 5.37 -104.62 -0.56 -2.91 16 24 C 0.50 7.93 2.83 36.01 0.10 8.03 16 25 F -0.18 -2.69 15.97 2.25 0.04 -2.65 16 26 F -0.17 -2.86 15.33 2.25 0.03 -2.82 16 27 F -0.15 -2.87 13.62 2.25 0.03 -2.84 16 28 H 0.05 0.80 6.64 -51.93 -0.35 0.45 16 29 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.07 1.52 8.14 -51.93 -0.42 1.09 16 32 H 0.05 1.24 3.22 -51.93 -0.17 1.08 16 33 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 34 H 0.32 5.96 6.25 -39.29 -0.25 5.72 16 35 H 0.11 2.22 4.96 -51.93 -0.26 1.97 16 36 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.37 3.52 7.32 45.56 0.33 3.85 16 38 H 0.13 1.03 6.41 -52.49 -0.34 0.70 16 39 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 40 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 41 H 0.14 1.30 7.16 -52.49 -0.38 0.93 16 LS Contribution 332.85 15.07 5.02 5.02 Total: -1.00 -32.57 332.85 -6.49 -39.07 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -4.19 Total: 8.33 kcal Atomic # 6 Polarization: -9.73 SS G_CDS: -2.92 Total: -12.66 kcal Atomic # 7 Polarization: -41.64 SS G_CDS: 0.10 Total: -41.54 kcal Atomic # 8 Polarization: -7.41 SS G_CDS: -0.44 Total: -7.85 kcal Atomic # 9 Polarization: -8.42 SS G_CDS: 0.10 Total: -8.31 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.15 Total: 17.95 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.57 -6.49 -39.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846994413.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.644 kcal (2) G-P(sol) polarization free energy of solvation -32.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds