Wall clock time and date at job start Tue Mar 31 2020 13:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52992 * 109.47267 * 2 1 4 4 H 1.09011 * 109.47377 * 54.84658 * 3 2 1 5 5 C 1.50702 * 109.47603 * 174.84692 * 3 2 1 6 6 H 1.08001 * 120.00119 * 119.99734 * 5 3 2 7 7 C 1.37877 * 119.99735 * 300.00560 * 5 3 2 8 8 N 1.31516 * 120.00142 * 179.97438 * 7 5 3 9 9 Si 1.86794 * 120.00105 * 359.97438 * 7 5 3 10 10 H 1.48504 * 109.47020 * 90.00389 * 9 7 5 11 11 H 1.48506 * 109.47339 * 209.99988 * 9 7 5 12 12 H 1.48498 * 109.47478 * 330.00380 * 9 7 5 13 13 N 1.46900 * 109.47357 * 294.84897 * 3 2 1 14 14 C 1.46908 * 111.00279 * 153.78873 * 13 3 2 15 15 C 1.52996 * 109.46896 * 174.69220 * 14 13 3 16 16 H 1.08999 * 109.47521 * 304.99669 * 15 14 13 17 17 O 1.42894 * 109.47195 * 65.00383 * 15 14 13 18 18 C 1.50702 * 109.46897 * 185.00301 * 15 14 13 19 19 C 1.38267 * 119.99638 * 264.98022 * 18 15 14 20 20 C 1.38220 * 119.99464 * 179.97438 * 19 18 15 21 21 C 1.38251 * 120.00278 * 359.97438 * 20 19 18 22 22 C 1.38217 * 120.00146 * 359.81099 * 21 20 19 23 23 C 1.38204 * 120.00462 * 84.99661 * 18 15 14 24 24 C 1.50705 * 119.99921 * 359.97438 * 23 18 15 25 25 F 1.39899 * 109.47399 * 179.97438 * 24 23 18 26 26 F 1.39908 * 109.47068 * 59.99741 * 24 23 18 27 27 F 1.39895 * 109.47000 * 299.99750 * 24 23 18 28 28 H 1.09005 * 109.47154 * 65.98302 * 1 2 3 29 29 H 1.09001 * 109.47098 * 185.98084 * 1 2 3 30 30 H 1.09001 * 109.46825 * 305.98272 * 1 2 3 31 31 H 1.08999 * 109.47305 * 240.00065 * 2 1 3 32 32 H 1.08995 * 109.46920 * 120.00089 * 2 1 3 33 33 H 0.96996 * 120.00473 * 179.97438 * 8 7 5 34 34 H 1.00904 * 110.99799 * 29.83683 * 13 3 2 35 35 H 1.09003 * 109.46934 * 54.69431 * 14 13 3 36 36 H 1.08995 * 109.47133 * 294.69260 * 14 13 3 37 37 H 0.96702 * 114.00450 * 59.99906 * 17 15 14 38 38 H 1.07991 * 120.00134 * 359.97216 * 19 18 15 39 39 H 1.07999 * 119.99515 * 179.97438 * 20 19 18 40 40 H 1.07999 * 119.99936 * 179.97438 * 21 20 19 41 41 H 1.07993 * 120.00064 * 180.22904 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6033 1.9823 0.8403 5 6 3.5416 1.4444 0.1276 6 1 4.1489 1.8883 -0.6474 7 6 4.1402 0.8794 1.2337 8 7 5.4507 0.8807 1.3449 9 14 3.0899 0.1122 2.5744 10 1 2.8689 -1.3242 2.2689 11 1 3.7844 0.2391 3.8809 12 1 1.7815 0.8114 2.6393 13 7 1.6546 2.0981 -1.2567 14 6 1.5474 3.5527 -1.0804 15 6 1.2755 4.2117 -2.4341 16 1 2.0478 3.9158 -3.1441 17 8 -0.0024 3.7946 -2.9188 18 6 1.2876 5.7103 -2.2746 19 6 0.1022 6.3938 -2.0757 20 6 0.1134 7.7682 -1.9289 21 6 1.3097 8.4592 -1.9804 22 6 2.4950 7.7754 -2.1748 23 6 2.4833 6.4013 -2.3275 24 6 3.7752 5.6562 -2.5440 25 9 4.8398 6.5637 -2.5605 26 9 3.7228 4.9773 -3.7662 27 9 3.9623 4.7360 -1.5071 28 1 -0.3634 0.4183 -0.9387 29 1 -0.3633 -1.0221 0.1071 30 1 -0.3633 0.6038 0.8316 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 5.8718 0.4835 2.1232 34 1 0.7940 1.7131 -1.6163 35 1 2.4803 3.9385 -0.6693 36 1 0.7289 3.7764 -0.3964 37 1 -0.7387 4.0255 -2.3361 38 1 -0.8322 5.8540 -2.0351 39 1 -0.8125 8.3021 -1.7740 40 1 1.3183 9.5331 -1.8661 41 1 3.4299 8.3148 -2.2113 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000846994413.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:13 Heat of formation + Delta-G solvation = -189.192420 kcal Electronic energy + Delta-G solvation = -28152.468755 eV Core-core repulsion = 23809.655201 eV Total energy + Delta-G solvation = -4342.813554 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -51.27655 -48.79259 -48.72131 -40.93230 -38.81669 -37.52015 -34.41445 -33.67491 -32.95442 -32.23925 -29.57527 -28.14828 -26.82192 -24.73129 -23.77628 -23.16816 -22.18699 -21.64702 -19.62135 -19.55467 -19.48875 -18.84538 -18.06300 -17.13472 -16.88403 -16.73759 -16.10283 -15.90954 -15.73687 -15.64562 -15.51685 -15.18205 -15.12618 -14.98132 -14.85432 -14.77629 -14.47013 -14.17784 -13.89845 -13.75719 -13.64575 -13.39459 -12.95219 -12.81407 -12.71626 -12.44410 -12.26953 -12.20190 -11.98652 -11.75602 -11.33629 -11.23441 -11.07082 -10.66340 -10.22168 -9.88535 -9.04044 -8.25054 -6.26621 -0.10397 0.22041 1.27847 1.32613 1.43162 1.63668 2.31998 2.46650 2.69463 2.97615 3.06445 3.19502 3.34011 3.35454 3.78889 3.85961 3.98979 4.08922 4.17643 4.29900 4.32911 4.38058 4.38941 4.44146 4.58299 4.75990 4.82950 4.91984 4.94320 5.08470 5.10827 5.22058 5.22401 5.33572 5.37441 5.44538 5.72261 5.80544 6.07415 6.49669 6.70408 6.80925 6.98237 7.37265 8.92732 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.014890 B = 0.004862 C = 0.004195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.951281 B = 5757.323304 C = 6673.121767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.136 4.136 3 C 0.197 3.803 4 H -0.005 1.005 5 C -0.496 4.496 6 H 0.029 0.971 7 C 0.005 3.995 8 N -0.953 5.953 9 Si 0.950 3.050 10 H -0.265 1.265 11 H -0.300 1.300 12 H -0.247 1.247 13 N -0.679 5.679 14 C 0.032 3.968 15 C 0.145 3.855 16 H 0.095 0.905 17 O -0.549 6.549 18 C -0.080 4.080 19 C -0.116 4.116 20 C -0.076 4.076 21 C -0.117 4.117 22 C -0.081 4.081 23 C -0.192 4.192 24 C 0.492 3.508 25 F -0.179 7.179 26 F -0.184 7.184 27 F -0.177 7.177 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.050 0.950 31 H 0.060 0.940 32 H 0.040 0.960 33 H 0.263 0.737 34 H 0.339 0.661 35 H 0.074 0.926 36 H 0.038 0.962 37 H 0.386 0.614 38 H 0.159 0.841 39 H 0.172 0.828 40 H 0.169 0.831 41 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.099 15.970 -6.217 23.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.174 4.174 3 C 0.088 3.912 4 H 0.012 0.988 5 C -0.535 4.535 6 H 0.048 0.952 7 C -0.191 4.191 8 N -0.594 5.594 9 Si 0.777 3.223 10 H -0.191 1.191 11 H -0.228 1.228 12 H -0.171 1.171 13 N -0.312 5.312 14 C -0.098 4.098 15 C 0.085 3.915 16 H 0.112 0.888 17 O -0.357 6.357 18 C -0.081 4.081 19 C -0.134 4.134 20 C -0.093 4.093 21 C -0.134 4.134 22 C -0.099 4.099 23 C -0.194 4.194 24 C 0.439 3.561 25 F -0.161 7.161 26 F -0.165 7.165 27 F -0.159 7.159 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.159 0.841 35 H 0.092 0.908 36 H 0.056 0.944 37 H 0.237 0.763 38 H 0.177 0.823 39 H 0.189 0.811 40 H 0.186 0.814 41 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -14.935 15.690 -6.857 22.721 hybrid contribution 0.069 -0.604 1.546 1.661 sum -14.866 15.086 -5.311 21.835 Atomic orbital electron populations 1.21833 0.94087 1.02488 1.02085 1.22007 0.96603 0.98010 1.00767 1.19395 0.93554 0.91120 0.87139 0.98755 1.21309 0.91717 1.35902 1.04587 0.95243 1.25849 0.95921 0.96824 1.00524 1.70070 1.10916 1.47742 1.30705 0.85839 0.79431 0.79573 0.77449 1.19110 1.22823 1.17081 1.60165 1.38124 1.02661 1.30240 1.22787 1.01723 0.89811 0.95463 1.20859 0.87072 0.87865 0.95681 0.88771 1.86640 1.15513 1.82374 1.51124 1.20375 0.93643 0.96227 0.97884 1.21258 0.96977 0.95609 0.99554 1.21831 0.99944 0.93406 0.94168 1.21613 0.90946 1.02098 0.98781 1.21285 1.01506 0.91009 0.96092 1.19847 0.90639 0.96189 1.12703 1.18861 0.85790 0.77557 0.73940 1.93124 1.59842 1.66864 1.96248 1.93149 1.96520 1.81392 1.45468 1.93269 1.95697 1.68100 1.58804 0.91120 0.91269 0.93060 0.92135 0.94205 0.92791 0.84071 0.90795 0.94403 0.76349 0.82325 0.81050 0.81355 0.83527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.51 9.63 71.98 0.69 -3.82 16 2 C -0.14 -5.68 5.01 30.59 0.15 -5.52 16 3 C 0.20 9.35 1.62 44.17 0.07 9.42 16 4 H -0.01 -0.24 6.90 -2.38 -0.02 -0.26 16 5 C -0.50 -29.70 9.18 25.60 0.24 -29.47 16 6 H 0.03 2.02 8.06 -2.91 -0.02 2.00 16 7 C 0.00 0.29 5.45 84.65 0.46 0.76 16 8 N -0.95 -62.17 13.96 21.45 0.30 -61.87 16 9 Si 0.95 46.09 24.41 68.60 1.67 47.77 16 10 H -0.26 -12.18 6.83 99.48 0.68 -11.50 16 11 H -0.30 -14.56 7.11 99.48 0.71 -13.86 16 12 H -0.25 -10.97 6.53 99.48 0.65 -10.32 16 13 N -0.68 -28.19 6.27 -495.44 -3.11 -31.30 16 14 C 0.03 1.17 4.81 86.30 0.42 1.59 16 15 C 0.15 4.47 2.80 29.85 0.08 4.56 16 16 H 0.09 3.51 5.75 -2.39 -0.01 3.49 16 17 O -0.55 -13.89 12.60 -148.98 -1.88 -15.76 16 18 C -0.08 -2.07 5.03 -19.87 -0.10 -2.17 16 19 C -0.12 -1.99 9.31 22.27 0.21 -1.78 16 20 C -0.08 -0.94 10.05 22.27 0.22 -0.71 16 21 C -0.12 -1.60 10.05 22.27 0.22 -1.37 16 22 C -0.08 -1.66 9.43 22.27 0.21 -1.45 16 23 C -0.19 -5.31 5.37 -19.87 -0.11 -5.41 16 24 C 0.49 16.84 2.83 71.24 0.20 17.05 16 25 F -0.18 -5.71 15.97 44.97 0.72 -4.99 16 26 F -0.18 -6.59 15.33 44.97 0.69 -5.90 16 27 F -0.18 -7.61 13.62 44.97 0.61 -7.00 16 28 H 0.07 1.89 6.64 -2.38 -0.02 1.87 16 29 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 32 H 0.04 1.77 3.22 -2.39 -0.01 1.76 16 33 H 0.26 16.06 8.31 -92.71 -0.77 15.29 16 34 H 0.34 12.07 6.25 -89.69 -0.56 11.51 16 35 H 0.07 3.27 4.96 -2.39 -0.01 3.26 16 36 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.39 6.11 7.32 -74.06 -0.54 5.57 16 38 H 0.16 1.75 6.41 -2.92 -0.02 1.73 16 39 H 0.17 0.79 8.06 -2.91 -0.02 0.76 16 40 H 0.17 1.11 8.06 -2.91 -0.02 1.08 16 41 H 0.15 2.64 7.16 -2.91 -0.02 2.62 16 Total: -1.00 -77.21 332.85 1.89 -75.32 By element: Atomic # 1 Polarization: 22.16 SS G_CDS: -0.09 Total: 22.07 kcal Atomic # 6 Polarization: -21.31 SS G_CDS: 2.97 Total: -18.34 kcal Atomic # 7 Polarization: -90.36 SS G_CDS: -2.81 Total: -93.17 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: -1.88 Total: -15.76 kcal Atomic # 9 Polarization: -19.90 SS G_CDS: 2.02 Total: -17.88 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 1.67 Total: 47.77 kcal Total: -77.21 1.89 -75.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846994413.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.872 kcal (2) G-P(sol) polarization free energy of solvation -77.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds