Wall clock time and date at job start Tue Mar 31 2020 13:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.47102 * 2 1 4 4 H 1.09000 * 109.47158 * 177.94570 * 3 2 1 5 5 C 1.50697 * 109.47326 * 57.94612 * 3 2 1 6 6 H 1.08007 * 120.00079 * 240.00441 * 5 3 2 7 7 C 1.37877 * 120.00183 * 59.99636 * 5 3 2 8 8 N 1.31513 * 119.99853 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00275 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47109 * 89.99818 * 9 7 5 11 11 H 1.48495 * 109.47196 * 210.00061 * 9 7 5 12 12 H 1.48500 * 109.46961 * 329.99942 * 9 7 5 13 13 N 1.46907 * 109.47243 * 297.94433 * 3 2 1 14 14 C 1.46902 * 110.99885 * 273.74403 * 13 3 2 15 15 C 1.53000 * 109.46687 * 174.96378 * 14 13 3 16 16 H 1.08999 * 109.47231 * 60.00641 * 15 14 13 17 17 O 1.42893 * 109.47325 * 300.00120 * 15 14 13 18 18 C 1.50700 * 109.46834 * 180.02562 * 15 14 13 19 19 C 1.38255 * 119.99797 * 94.72793 * 18 15 14 20 20 C 1.38225 * 119.99659 * 179.80990 * 19 18 15 21 21 C 1.38248 * 119.99965 * 0.41842 * 20 19 18 22 22 C 1.38220 * 120.00225 * 359.81438 * 21 20 19 23 23 C 1.38213 * 119.99807 * 274.99960 * 18 15 14 24 24 C 1.50699 * 120.00168 * 359.97438 * 23 18 15 25 25 F 1.39899 * 109.47132 * 179.97438 * 24 23 18 26 26 F 1.39897 * 109.46932 * 299.99606 * 24 23 18 27 27 F 1.39900 * 109.47066 * 59.99819 * 24 23 18 28 28 H 1.08998 * 109.47028 * 54.43821 * 1 2 3 29 29 H 1.09001 * 109.47219 * 174.44072 * 1 2 3 30 30 H 1.08998 * 109.46628 * 294.43798 * 1 2 3 31 31 H 1.09005 * 109.46631 * 240.00369 * 2 1 3 32 32 H 1.08996 * 109.47175 * 120.00602 * 2 1 3 33 33 H 0.96996 * 120.00347 * 180.02562 * 8 7 5 34 34 H 1.00900 * 110.99779 * 149.78853 * 13 3 2 35 35 H 1.08999 * 109.46762 * 54.96732 * 14 13 3 36 36 H 1.08996 * 109.47096 * 294.96427 * 14 13 3 37 37 H 0.96705 * 114.00511 * 300.00269 * 17 15 14 38 38 H 1.07999 * 120.00647 * 0.02562 * 19 18 15 39 39 H 1.07997 * 119.99349 * 180.21381 * 20 19 18 40 40 H 1.07997 * 119.99988 * 179.78932 * 21 20 19 41 41 H 1.07997 * 120.00240 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1294 1.4427 0.0368 5 6 1.4966 2.1674 1.2042 6 1 0.8795 3.0442 1.0737 7 6 1.7870 1.7114 2.4725 8 7 2.5387 0.6441 2.6315 9 14 1.1128 2.6097 3.9652 10 1 -0.2083 2.0388 4.3315 11 1 2.0529 2.4525 5.1039 12 1 0.9577 4.0518 3.6468 13 7 1.5913 2.1205 -1.2236 14 6 2.5290 1.8855 -2.3297 15 6 1.9671 2.4993 -3.6136 16 1 1.8310 3.5718 -3.4743 17 8 0.7088 1.8952 -3.9193 18 6 2.9288 2.2578 -4.7485 19 6 2.7565 1.1668 -5.5801 20 6 3.6363 0.9475 -6.6234 21 6 4.6934 1.8141 -6.8300 22 6 4.8683 2.9021 -5.9957 23 6 3.9861 3.1238 -4.9545 24 6 4.1770 4.3098 -4.0446 25 9 5.3050 5.0314 -4.4495 26 9 3.0480 5.1335 -4.1092 27 9 4.3554 3.8653 -2.7302 28 1 -0.3633 0.5977 -0.8360 29 1 -0.3634 -1.0228 -0.0996 30 1 -0.3632 0.4252 0.9356 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 2.7427 0.3230 3.5237 34 1 1.4618 3.1082 -1.0628 35 1 2.6651 0.8131 -2.4689 36 1 3.4888 2.3464 -2.0964 37 1 0.7544 0.9390 -4.0564 38 1 1.9327 0.4879 -5.4167 39 1 3.4997 0.0972 -7.2751 40 1 5.3827 1.6409 -7.6431 41 1 5.6943 3.5790 -6.1569 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000846995014.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:17 Heat of formation + Delta-G solvation = -172.716218 kcal Electronic energy + Delta-G solvation = -27878.771326 eV Core-core repulsion = 23536.672233 eV Total energy + Delta-G solvation = -4342.099092 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.26560 -47.78205 -47.67422 -40.02556 -37.30782 -35.67228 -32.82490 -32.24455 -31.48521 -30.57202 -27.80938 -26.19738 -25.46257 -23.29463 -22.84462 -22.29601 -21.10599 -19.11212 -18.60487 -18.53498 -18.46911 -16.96989 -16.52970 -15.83823 -15.35211 -15.08412 -14.97141 -14.73225 -14.64787 -14.42649 -14.16450 -13.97593 -13.82537 -13.66092 -13.43545 -13.30565 -13.03131 -12.92972 -12.76609 -12.00707 -11.89703 -11.74689 -11.53109 -11.39727 -10.92974 -10.88495 -10.74663 -10.35770 -10.15363 -10.00068 -9.64378 -9.46576 -9.33328 -9.02392 -8.74238 -8.43435 -7.16188 -5.99193 -4.03997 0.68178 0.97805 2.57802 3.22244 3.32062 3.38560 3.41940 3.61953 3.92816 4.30570 4.35140 4.44354 4.48755 4.61949 4.66959 4.98483 5.09708 5.31586 5.32510 5.34574 5.43003 5.54027 5.72665 5.92036 5.97513 6.08031 6.29435 6.33740 6.48182 6.55272 6.74136 6.89214 7.26332 7.32075 7.53016 7.76138 7.78000 7.83736 7.88430 8.28072 8.40680 8.69218 9.04969 9.60573 11.06968 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.017324 B = 0.004039 C = 0.003594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.846573 B = 6930.423786 C = 7789.975567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.100 4.100 3 C 0.217 3.783 4 H -0.001 1.001 5 C -0.511 4.511 6 H 0.059 0.941 7 C 0.064 3.936 8 N -0.890 5.890 9 Si 0.893 3.107 10 H -0.280 1.280 11 H -0.288 1.288 12 H -0.275 1.275 13 N -0.673 5.673 14 C 0.021 3.979 15 C 0.132 3.868 16 H 0.111 0.889 17 O -0.533 6.533 18 C -0.055 4.055 19 C -0.115 4.115 20 C -0.084 4.084 21 C -0.129 4.129 22 C -0.071 4.071 23 C -0.179 4.179 24 C 0.504 3.496 25 F -0.179 7.179 26 F -0.173 7.173 27 F -0.162 7.162 28 H 0.050 0.950 29 H 0.011 0.989 30 H 0.051 0.949 31 H 0.007 0.993 32 H 0.084 0.916 33 H 0.260 0.740 34 H 0.331 0.669 35 H 0.066 0.934 36 H 0.050 0.950 37 H 0.370 0.630 38 H 0.136 0.864 39 H 0.132 0.868 40 H 0.133 0.867 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.800 1.863 -19.644 20.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.138 4.138 3 C 0.109 3.891 4 H 0.017 0.983 5 C -0.549 4.549 6 H 0.077 0.923 7 C -0.138 4.138 8 N -0.529 5.529 9 Si 0.721 3.279 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.200 1.200 13 N -0.304 5.304 14 C -0.109 4.109 15 C 0.072 3.928 16 H 0.129 0.871 17 O -0.338 6.338 18 C -0.057 4.057 19 C -0.132 4.132 20 C -0.102 4.102 21 C -0.147 4.147 22 C -0.089 4.089 23 C -0.180 4.180 24 C 0.450 3.550 25 F -0.161 7.161 26 F -0.155 7.155 27 F -0.144 7.144 28 H 0.069 0.931 29 H 0.030 0.970 30 H 0.070 0.930 31 H 0.025 0.975 32 H 0.102 0.898 33 H 0.070 0.930 34 H 0.148 0.852 35 H 0.085 0.915 36 H 0.067 0.933 37 H 0.217 0.783 38 H 0.153 0.847 39 H 0.150 0.850 40 H 0.151 0.849 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 4.253 1.884 -19.571 20.116 hybrid contribution 0.801 0.570 1.223 1.569 sum 5.054 2.454 -18.347 19.188 Atomic orbital electron populations 1.21443 0.97393 0.97052 1.01778 1.21410 0.95174 0.98180 0.99061 1.19119 0.93208 0.91626 0.85128 0.98336 1.21185 1.31487 1.11940 0.90317 0.92275 1.24872 0.95077 0.95040 0.98825 1.69887 1.37462 1.23215 1.22306 0.86579 0.78757 0.80143 0.82429 1.20651 1.21376 1.19959 1.60576 1.46732 1.16261 1.06851 1.22849 0.95854 1.00596 0.91608 1.21195 0.82313 0.99393 0.89868 0.87145 1.86648 1.28966 1.25531 1.92617 1.20608 0.94531 0.93558 0.96967 1.20954 1.00138 0.96989 0.95165 1.21372 0.93643 0.98587 0.96578 1.21138 0.98732 0.94825 0.99962 1.21002 0.97572 0.97616 0.92758 1.19796 1.00941 0.97407 0.99863 1.18376 0.73873 0.82941 0.79836 1.93149 1.52631 1.79885 1.90421 1.93190 1.51609 1.74383 1.96292 1.93225 1.94981 1.88485 1.37665 0.93092 0.97015 0.93021 0.97460 0.89762 0.93027 0.85209 0.91508 0.93253 0.78279 0.84663 0.84986 0.84916 0.84475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.70 9.46 37.16 0.35 -2.35 16 2 C -0.10 -2.41 5.58 -26.73 -0.15 -2.56 16 3 C 0.22 5.40 2.30 -68.87 -0.16 5.24 16 4 H 0.00 -0.03 7.84 -51.93 -0.41 -0.43 16 5 C -0.51 -13.81 7.33 -34.44 -0.25 -14.06 16 6 H 0.06 1.60 7.60 -52.48 -0.40 1.20 16 7 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 8 N -0.89 -25.28 11.34 55.43 0.63 -24.65 16 9 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 13 N -0.67 -14.19 5.38 -107.95 -0.58 -14.77 16 14 C 0.02 0.38 4.88 -3.82 -0.02 0.36 16 15 C 0.13 1.98 2.80 -27.88 -0.08 1.90 16 16 H 0.11 1.77 5.75 -51.93 -0.30 1.47 16 17 O -0.53 -7.98 12.86 -35.23 -0.45 -8.44 16 18 C -0.06 -0.70 5.03 -104.62 -0.53 -1.23 16 19 C -0.11 -1.18 9.31 -39.58 -0.37 -1.54 16 20 C -0.08 -0.70 10.05 -39.58 -0.40 -1.10 16 21 C -0.13 -1.06 10.05 -39.58 -0.40 -1.46 16 22 C -0.07 -0.71 9.43 -39.58 -0.37 -1.08 16 23 C -0.18 -2.20 5.37 -104.62 -0.56 -2.77 16 24 C 0.50 6.79 2.83 36.01 0.10 6.89 16 25 F -0.18 -2.23 15.97 2.25 0.04 -2.20 16 26 F -0.17 -2.44 15.33 2.25 0.03 -2.41 16 27 F -0.16 -2.53 13.60 2.25 0.03 -2.50 16 28 H 0.05 1.12 7.50 -51.93 -0.39 0.73 16 29 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.05 1.26 7.37 -51.93 -0.38 0.88 16 31 H 0.01 0.15 7.43 -51.93 -0.39 -0.23 16 32 H 0.08 2.27 6.13 -51.93 -0.32 1.95 16 33 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 34 H 0.33 7.09 8.25 -39.29 -0.32 6.76 16 35 H 0.07 1.19 7.40 -51.93 -0.38 0.80 16 36 H 0.05 0.92 5.01 -51.93 -0.26 0.66 16 37 H 0.37 4.38 7.32 45.56 0.33 4.71 16 38 H 0.14 1.14 6.41 -52.49 -0.34 0.81 16 39 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 40 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 41 H 0.14 1.12 7.16 -52.49 -0.38 0.75 16 LS Contribution 338.77 15.07 5.11 5.11 Total: -1.00 -29.80 338.77 -7.47 -37.28 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -4.33 Total: 8.33 kcal Atomic # 6 Polarization: -9.19 SS G_CDS: -2.92 Total: -12.11 kcal Atomic # 7 Polarization: -39.47 SS G_CDS: 0.05 Total: -39.42 kcal Atomic # 8 Polarization: -7.98 SS G_CDS: -0.45 Total: -8.44 kcal Atomic # 9 Polarization: -7.21 SS G_CDS: 0.10 Total: -7.11 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.80 -7.47 -37.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846995014.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.441 kcal (2) G-P(sol) polarization free energy of solvation -29.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds