Wall clock time and date at job start Tue Mar 31 2020 13:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.47102 * 2 1 4 4 H 1.09000 * 109.47158 * 177.94570 * 3 2 1 5 5 C 1.50697 * 109.47326 * 57.94612 * 3 2 1 6 6 H 1.08007 * 120.00079 * 240.00441 * 5 3 2 7 7 C 1.37877 * 120.00183 * 59.99636 * 5 3 2 8 8 N 1.31513 * 119.99853 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00275 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47109 * 89.99818 * 9 7 5 11 11 H 1.48495 * 109.47196 * 210.00061 * 9 7 5 12 12 H 1.48500 * 109.46961 * 329.99942 * 9 7 5 13 13 N 1.46907 * 109.47243 * 297.94433 * 3 2 1 14 14 C 1.46902 * 110.99885 * 273.74403 * 13 3 2 15 15 C 1.53000 * 109.46687 * 174.96378 * 14 13 3 16 16 H 1.08999 * 109.47231 * 60.00641 * 15 14 13 17 17 O 1.42893 * 109.47325 * 300.00120 * 15 14 13 18 18 C 1.50700 * 109.46834 * 180.02562 * 15 14 13 19 19 C 1.38255 * 119.99797 * 94.72793 * 18 15 14 20 20 C 1.38225 * 119.99659 * 179.80990 * 19 18 15 21 21 C 1.38248 * 119.99965 * 0.41842 * 20 19 18 22 22 C 1.38220 * 120.00225 * 359.81438 * 21 20 19 23 23 C 1.38213 * 119.99807 * 274.99960 * 18 15 14 24 24 C 1.50699 * 120.00168 * 359.97438 * 23 18 15 25 25 F 1.39899 * 109.47132 * 179.97438 * 24 23 18 26 26 F 1.39897 * 109.46932 * 299.99606 * 24 23 18 27 27 F 1.39900 * 109.47066 * 59.99819 * 24 23 18 28 28 H 1.08998 * 109.47028 * 54.43821 * 1 2 3 29 29 H 1.09001 * 109.47219 * 174.44072 * 1 2 3 30 30 H 1.08998 * 109.46628 * 294.43798 * 1 2 3 31 31 H 1.09005 * 109.46631 * 240.00369 * 2 1 3 32 32 H 1.08996 * 109.47175 * 120.00602 * 2 1 3 33 33 H 0.96996 * 120.00347 * 180.02562 * 8 7 5 34 34 H 1.00900 * 110.99779 * 149.78853 * 13 3 2 35 35 H 1.08999 * 109.46762 * 54.96732 * 14 13 3 36 36 H 1.08996 * 109.47096 * 294.96427 * 14 13 3 37 37 H 0.96705 * 114.00511 * 300.00269 * 17 15 14 38 38 H 1.07999 * 120.00647 * 0.02562 * 19 18 15 39 39 H 1.07997 * 119.99349 * 180.21381 * 20 19 18 40 40 H 1.07997 * 119.99988 * 179.78932 * 21 20 19 41 41 H 1.07997 * 120.00240 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1294 1.4427 0.0368 5 6 1.4966 2.1674 1.2042 6 1 0.8795 3.0442 1.0737 7 6 1.7870 1.7114 2.4725 8 7 2.5387 0.6441 2.6315 9 14 1.1128 2.6097 3.9652 10 1 -0.2083 2.0388 4.3315 11 1 2.0529 2.4525 5.1039 12 1 0.9577 4.0518 3.6468 13 7 1.5913 2.1205 -1.2236 14 6 2.5290 1.8855 -2.3297 15 6 1.9671 2.4993 -3.6136 16 1 1.8310 3.5718 -3.4743 17 8 0.7088 1.8952 -3.9193 18 6 2.9288 2.2578 -4.7485 19 6 2.7565 1.1668 -5.5801 20 6 3.6363 0.9475 -6.6234 21 6 4.6934 1.8141 -6.8300 22 6 4.8683 2.9021 -5.9957 23 6 3.9861 3.1238 -4.9545 24 6 4.1770 4.3098 -4.0446 25 9 5.3050 5.0314 -4.4495 26 9 3.0480 5.1335 -4.1092 27 9 4.3554 3.8653 -2.7302 28 1 -0.3633 0.5977 -0.8360 29 1 -0.3634 -1.0228 -0.0996 30 1 -0.3632 0.4252 0.9356 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 2.7427 0.3230 3.5237 34 1 1.4618 3.1082 -1.0628 35 1 2.6651 0.8131 -2.4689 36 1 3.4888 2.3464 -2.0964 37 1 0.7544 0.9390 -4.0564 38 1 1.9327 0.4879 -5.4167 39 1 3.4997 0.0972 -7.2751 40 1 5.3827 1.6409 -7.6431 41 1 5.6943 3.5790 -6.1569 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000846995014.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:16 Heat of formation + Delta-G solvation = -191.932321 kcal Electronic energy + Delta-G solvation = -27879.604598 eV Core-core repulsion = 23536.672233 eV Total energy + Delta-G solvation = -4342.932365 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -51.34705 -48.84439 -48.79588 -40.89926 -38.61453 -37.31077 -34.44465 -33.40049 -32.60730 -32.11567 -29.31760 -27.59459 -26.76551 -25.10581 -24.18804 -23.18483 -22.15414 -20.97472 -19.64302 -19.60036 -19.52408 -18.50505 -17.87237 -17.17476 -16.72292 -16.34871 -16.15593 -15.84897 -15.75632 -15.53328 -15.44005 -15.26214 -15.07375 -14.92515 -14.82390 -14.64967 -14.53195 -13.98374 -13.77955 -13.69961 -13.52958 -13.02319 -12.84853 -12.71713 -12.57686 -12.44394 -12.28712 -11.99999 -11.95576 -11.71534 -11.35587 -11.00766 -10.78122 -10.52800 -10.22406 -9.87978 -8.94914 -8.09866 -6.21518 -0.10716 0.22494 1.40985 1.42140 1.51529 1.57613 2.41684 2.46865 2.63250 2.93284 3.18351 3.25273 3.31365 3.43213 3.79305 3.93776 4.03463 4.08240 4.19929 4.38451 4.40396 4.62681 4.63737 4.80113 4.82279 4.83098 4.89243 4.97812 5.20071 5.31908 5.34515 5.38365 5.40247 5.57694 5.71895 5.79859 5.83716 5.91704 6.28003 6.46729 6.72693 6.82448 7.01370 7.46929 8.95291 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.017324 B = 0.004039 C = 0.003594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.846573 B = 6930.423786 C = 7789.975567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.094 4.094 3 C 0.223 3.777 4 H -0.040 1.040 5 C -0.524 4.524 6 H 0.054 0.946 7 C 0.019 3.981 8 N -0.916 5.916 9 Si 0.953 3.047 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.271 1.271 13 N -0.668 5.668 14 C 0.025 3.975 15 C 0.147 3.853 16 H 0.095 0.905 17 O -0.544 6.544 18 C -0.079 4.079 19 C -0.120 4.120 20 C -0.077 4.077 21 C -0.118 4.118 22 C -0.078 4.078 23 C -0.195 4.195 24 C 0.499 3.501 25 F -0.175 7.175 26 F -0.181 7.181 27 F -0.181 7.181 28 H 0.056 0.944 29 H 0.035 0.965 30 H 0.027 0.973 31 H 0.023 0.977 32 H 0.055 0.945 33 H 0.261 0.739 34 H 0.326 0.674 35 H 0.066 0.934 36 H 0.040 0.960 37 H 0.383 0.617 38 H 0.151 0.849 39 H 0.168 0.832 40 H 0.169 0.831 41 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.711 1.108 -21.837 22.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.133 4.133 3 C 0.115 3.885 4 H -0.022 1.022 5 C -0.563 4.563 6 H 0.072 0.928 7 C -0.181 4.181 8 N -0.555 5.555 9 Si 0.779 3.221 10 H -0.201 1.201 11 H -0.210 1.210 12 H -0.195 1.195 13 N -0.297 5.297 14 C -0.105 4.105 15 C 0.087 3.913 16 H 0.112 0.888 17 O -0.351 6.351 18 C -0.080 4.080 19 C -0.138 4.138 20 C -0.095 4.095 21 C -0.135 4.135 22 C -0.096 4.096 23 C -0.196 4.196 24 C 0.445 3.555 25 F -0.156 7.156 26 F -0.162 7.162 27 F -0.162 7.162 28 H 0.075 0.925 29 H 0.054 0.946 30 H 0.046 0.954 31 H 0.041 0.959 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.143 0.857 35 H 0.085 0.915 36 H 0.057 0.943 37 H 0.233 0.767 38 H 0.169 0.831 39 H 0.185 0.815 40 H 0.186 0.814 41 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 4.161 1.127 -21.785 22.208 hybrid contribution 0.896 0.790 1.797 2.158 sum 5.057 1.917 -19.989 20.708 Atomic orbital electron populations 1.21288 0.95901 0.98488 1.00627 1.21271 0.96343 0.97311 0.98363 1.18914 0.90749 0.92535 0.86341 1.02236 1.21443 1.31400 1.11973 0.91468 0.92775 1.25590 0.95324 0.95727 1.01412 1.70015 1.38356 1.24329 1.22812 0.85637 0.78197 0.79128 0.79172 1.20100 1.21049 1.19536 1.60532 1.47428 1.15609 1.06158 1.22872 0.94963 1.00715 0.91923 1.20812 0.82825 0.98155 0.89495 0.88778 1.86610 1.29064 1.26853 1.92557 1.20392 0.94754 0.95439 0.97388 1.21245 1.01082 0.96242 0.95193 1.21809 0.92545 0.99264 0.95850 1.21608 0.98798 0.93348 0.99793 1.21291 0.97412 0.98660 0.92243 1.19831 1.02012 0.97068 1.00710 1.18668 0.73746 0.83604 0.79441 1.93145 1.52327 1.79888 1.90242 1.93167 1.52063 1.74739 1.96275 1.93181 1.95080 1.88717 1.39249 0.92525 0.94552 0.95406 0.95879 0.92634 0.93032 0.85725 0.91530 0.94251 0.76710 0.83121 0.81491 0.81393 0.83082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.72 9.46 71.98 0.68 -4.03 16 2 C -0.09 -4.60 5.58 30.59 0.17 -4.43 16 3 C 0.22 11.43 2.30 44.16 0.10 11.53 16 4 H -0.04 -2.31 7.84 -2.39 -0.02 -2.33 16 5 C -0.52 -29.00 7.33 25.60 0.19 -28.82 16 6 H 0.05 2.98 7.60 -2.91 -0.02 2.96 16 7 C 0.02 1.04 5.30 84.65 0.45 1.49 16 8 N -0.92 -53.11 11.34 21.45 0.24 -52.87 16 9 Si 0.95 44.31 29.54 68.60 2.03 46.34 16 10 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 11 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 12 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 13 N -0.67 -28.78 5.38 -495.45 -2.66 -31.44 16 14 C 0.03 0.91 4.88 86.30 0.42 1.33 16 15 C 0.15 4.43 2.80 29.85 0.08 4.51 16 16 H 0.09 3.11 5.75 -2.39 -0.01 3.10 16 17 O -0.54 -15.86 12.86 -148.98 -1.92 -17.77 16 18 C -0.08 -1.93 5.03 -19.87 -0.10 -2.03 16 19 C -0.12 -2.16 9.31 22.27 0.21 -1.95 16 20 C -0.08 -0.98 10.05 22.27 0.22 -0.75 16 21 C -0.12 -1.47 10.05 22.27 0.22 -1.25 16 22 C -0.08 -1.38 9.43 22.27 0.21 -1.17 16 23 C -0.19 -4.68 5.37 -19.87 -0.11 -4.78 16 24 C 0.50 13.73 2.83 71.24 0.20 13.94 16 25 F -0.17 -4.35 15.97 44.97 0.72 -3.63 16 26 F -0.18 -5.27 15.33 44.97 0.69 -4.59 16 27 F -0.18 -5.93 13.60 44.97 0.61 -5.32 16 28 H 0.06 2.43 7.50 -2.39 -0.02 2.41 16 29 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.03 1.34 7.37 -2.39 -0.02 1.32 16 31 H 0.02 1.02 7.43 -2.38 -0.02 1.00 16 32 H 0.06 3.05 6.13 -2.39 -0.01 3.03 16 33 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 34 H 0.33 14.47 8.25 -89.69 -0.74 13.73 16 35 H 0.07 2.38 7.40 -2.39 -0.02 2.36 16 36 H 0.04 1.54 5.01 -2.39 -0.01 1.52 16 37 H 0.38 8.49 7.32 -74.05 -0.54 7.94 16 38 H 0.15 2.13 6.41 -2.91 -0.02 2.11 16 39 H 0.17 0.96 8.06 -2.91 -0.02 0.94 16 40 H 0.17 0.92 8.06 -2.91 -0.02 0.90 16 41 H 0.15 2.14 7.16 -2.91 -0.02 2.12 16 Total: -1.00 -65.75 338.77 2.47 -63.28 By element: Atomic # 1 Polarization: 22.60 SS G_CDS: -0.19 Total: 22.41 kcal Atomic # 6 Polarization: -19.36 SS G_CDS: 2.95 Total: -16.40 kcal Atomic # 7 Polarization: -81.89 SS G_CDS: -2.42 Total: -84.31 kcal Atomic # 8 Polarization: -15.86 SS G_CDS: -1.92 Total: -17.77 kcal Atomic # 9 Polarization: -15.56 SS G_CDS: 2.02 Total: -13.54 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -65.75 2.47 -63.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846995014.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.656 kcal (2) G-P(sol) polarization free energy of solvation -65.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds