Wall clock time and date at job start Tue Mar 31 2020 13:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47205 * 2 1 4 4 H 1.08999 * 109.47241 * 305.90323 * 3 2 1 5 5 C 1.50698 * 109.47209 * 185.89889 * 3 2 1 6 6 H 1.08000 * 120.00296 * 240.00194 * 5 3 2 7 7 C 1.37877 * 119.99814 * 60.00063 * 5 3 2 8 8 N 1.31515 * 120.00004 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 120.00013 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47129 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47222 * 120.00202 * 9 7 5 12 12 H 1.48507 * 109.46838 * 240.00200 * 9 7 5 13 13 N 1.46905 * 109.47096 * 65.90122 * 3 2 1 14 14 C 1.46896 * 111.00068 * 208.59873 * 13 3 2 15 15 C 1.53002 * 109.47261 * 175.20968 * 14 13 3 16 16 H 1.09004 * 109.46803 * 304.99436 * 15 14 13 17 17 O 1.42900 * 109.46916 * 64.98944 * 15 14 13 18 18 C 1.50698 * 109.47476 * 184.99423 * 15 14 13 19 19 C 1.38254 * 119.99802 * 267.60254 * 18 15 14 20 20 C 1.38213 * 119.99925 * 180.02562 * 19 18 15 21 21 C 1.38258 * 120.00189 * 359.97438 * 20 19 18 22 22 C 1.38214 * 119.99960 * 359.95694 * 21 20 19 23 23 C 1.38214 * 120.00326 * 87.32365 * 18 15 14 24 24 C 1.50710 * 119.99522 * 0.02562 * 23 18 15 25 25 F 1.39896 * 109.46797 * 183.19061 * 24 23 18 26 26 F 1.39895 * 109.47064 * 303.18981 * 24 23 18 27 27 F 1.39901 * 109.47132 * 63.19098 * 24 23 18 28 28 H 1.09000 * 109.47617 * 174.66228 * 1 2 3 29 29 H 1.08999 * 109.47186 * 54.66323 * 1 2 3 30 30 H 1.09005 * 109.46714 * 294.66511 * 1 2 3 31 31 H 1.09001 * 109.46887 * 120.00785 * 2 1 3 32 32 H 1.08998 * 109.46480 * 239.99833 * 2 1 3 33 33 H 0.96998 * 119.99777 * 180.02562 * 8 7 5 34 34 H 1.00896 * 110.99535 * 332.55585 * 13 3 2 35 35 H 1.08998 * 109.47628 * 295.21636 * 14 13 3 36 36 H 1.09002 * 109.46768 * 55.21123 * 14 13 3 37 37 H 0.96705 * 113.99317 * 60.00113 * 17 15 14 38 38 H 1.07998 * 120.00123 * 359.97438 * 19 18 15 39 39 H 1.08005 * 119.99999 * 179.97438 * 20 19 18 40 40 H 1.07996 * 120.00125 * 179.97438 * 21 20 19 41 41 H 1.07994 * 120.00035 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5930 1.9859 -0.8324 5 6 3.5399 1.4449 -0.1460 6 1 4.1567 1.8854 0.6234 7 6 4.1248 0.8848 -1.2619 8 7 3.3737 0.3489 -2.1990 9 14 5.9841 0.8873 -1.4426 10 1 6.5954 1.5462 -0.2606 11 1 6.4739 -0.5113 -1.5388 12 1 6.3608 1.6294 -2.6725 13 7 1.6701 2.0926 1.2643 14 6 1.5054 3.5410 1.0830 15 6 1.0058 4.1648 2.3877 16 1 0.0935 3.6602 2.7056 17 8 2.0063 4.0214 3.3979 18 6 0.7201 5.6280 2.1678 19 6 1.7011 6.5693 2.4190 20 6 1.4388 7.9113 2.2179 21 6 0.1957 8.3125 1.7649 22 6 -0.7846 7.3714 1.5124 23 6 -0.5208 6.0286 1.7095 24 6 -1.5883 5.0020 1.4302 25 9 -2.7216 5.6372 0.9112 26 9 -1.1090 4.0716 0.5020 27 9 -1.9252 4.3445 2.6182 28 1 -0.3634 -1.0232 -0.0956 29 1 -0.3633 0.5944 -0.8383 30 1 -0.3633 0.4289 0.9340 31 1 1.8933 -0.5140 0.8899 32 1 1.8932 -0.5139 -0.8900 33 1 3.7853 -0.0455 -2.9839 34 1 0.8354 1.6796 1.6525 35 1 2.4635 3.9845 0.8117 36 1 0.7811 3.7279 0.2902 37 1 2.8473 4.4470 3.1818 38 1 2.6720 6.2560 2.7732 39 1 2.2050 8.6467 2.4145 40 1 -0.0094 9.3612 1.6082 41 1 -1.7555 7.6847 1.1582 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000846995015.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:21 Heat of formation + Delta-G solvation = -174.266519 kcal Electronic energy + Delta-G solvation = -27978.336267 eV Core-core repulsion = 23636.169949 eV Total energy + Delta-G solvation = -4342.166318 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.26002 -47.77711 -47.66397 -40.00405 -37.30377 -35.73715 -32.76549 -32.20245 -31.52874 -30.88355 -27.77607 -26.29357 -25.61969 -23.39236 -22.40407 -22.15029 -21.07925 -19.51710 -18.65529 -18.53605 -18.48141 -16.96308 -16.30262 -15.88634 -15.49722 -15.04068 -14.86826 -14.75147 -14.58939 -14.38149 -14.23955 -14.04658 -13.91087 -13.77800 -13.48630 -13.28656 -13.10906 -12.82750 -12.57396 -12.21049 -12.05432 -11.82294 -11.49716 -11.25480 -11.14198 -10.87675 -10.85599 -10.58831 -10.19587 -9.92478 -9.62318 -9.56225 -9.42729 -9.03751 -8.96478 -8.31671 -7.15509 -5.93931 -3.97835 0.70841 1.00691 2.58443 3.25029 3.32118 3.40147 3.44864 3.62234 3.93370 4.33069 4.35847 4.47251 4.50931 4.63567 4.69570 5.00182 5.11171 5.32709 5.34938 5.36614 5.45877 5.56210 5.71882 5.94046 6.03209 6.11382 6.20713 6.21371 6.33763 6.45442 6.49864 6.51330 6.89086 7.11300 7.21598 7.50638 7.77990 7.82910 7.94779 8.32651 8.43575 8.77710 9.10292 9.66874 11.11468 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.014804 B = 0.004440 C = 0.003846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.981792 B = 6304.105564 C = 7279.209698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.127 4.127 3 C 0.218 3.782 4 H 0.003 0.997 5 C -0.490 4.490 6 H 0.062 0.938 7 C 0.053 3.947 8 N -0.897 5.897 9 Si 0.894 3.106 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.287 1.287 13 N -0.674 5.674 14 C 0.035 3.965 15 C 0.131 3.869 16 H 0.107 0.893 17 O -0.536 6.536 18 C -0.055 4.055 19 C -0.113 4.113 20 C -0.083 4.083 21 C -0.128 4.128 22 C -0.072 4.072 23 C -0.179 4.179 24 C 0.504 3.496 25 F -0.179 7.179 26 F -0.164 7.164 27 F -0.175 7.175 28 H 0.037 0.963 29 H 0.042 0.958 30 H 0.034 0.966 31 H 0.041 0.959 32 H 0.100 0.900 33 H 0.258 0.742 34 H 0.317 0.683 35 H 0.075 0.925 36 H 0.044 0.956 37 H 0.372 0.628 38 H 0.136 0.864 39 H 0.133 0.867 40 H 0.133 0.867 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.715 15.287 7.876 19.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.165 4.165 3 C 0.111 3.889 4 H 0.020 0.980 5 C -0.528 4.528 6 H 0.080 0.920 7 C -0.147 4.147 8 N -0.537 5.537 9 Si 0.722 3.278 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.213 1.213 13 N -0.306 5.306 14 C -0.095 4.095 15 C 0.071 3.929 16 H 0.124 0.876 17 O -0.341 6.341 18 C -0.056 4.056 19 C -0.131 4.131 20 C -0.101 4.101 21 C -0.146 4.146 22 C -0.090 4.090 23 C -0.180 4.180 24 C 0.449 3.551 25 F -0.161 7.161 26 F -0.145 7.145 27 F -0.156 7.156 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.118 0.882 33 H 0.068 0.932 34 H 0.134 0.866 35 H 0.093 0.907 36 H 0.061 0.939 37 H 0.220 0.780 38 H 0.154 0.846 39 H 0.150 0.850 40 H 0.151 0.849 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -8.538 14.870 8.201 19.007 hybrid contribution 0.320 0.173 -1.133 1.190 sum -8.219 15.044 7.068 18.542 Atomic orbital electron populations 1.21879 0.99574 0.99692 0.99581 1.21784 0.91262 1.00372 1.03094 1.19196 0.95531 0.90001 0.84142 0.97971 1.21257 0.91301 1.36317 1.03969 0.92017 1.24970 0.98012 0.95752 0.95926 1.69887 1.34503 1.39750 1.09542 0.86506 0.85908 0.77607 0.77749 1.19815 1.21146 1.21336 1.60676 1.38471 1.00257 1.31171 1.22716 1.00973 0.92134 0.93652 1.21216 0.93058 0.88216 0.90375 0.87574 1.86631 1.24551 1.79607 1.43320 1.20574 0.92158 0.98275 0.94611 1.20956 0.99216 0.92539 1.00385 1.21373 0.96901 0.95938 0.95911 1.21138 0.93298 0.99680 1.00505 1.20988 1.00279 0.90947 0.96763 1.19789 0.94492 0.93970 1.09774 1.18382 0.81002 0.81053 0.74615 1.93147 1.53922 1.81827 1.87172 1.93256 1.87220 1.67475 1.66547 1.93198 1.92957 1.82436 1.47023 0.94369 0.93880 0.94681 0.94005 0.88215 0.93189 0.86561 0.90654 0.93863 0.77967 0.84612 0.84953 0.84913 0.84499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.02 9.67 37.16 0.36 -2.66 16 2 C -0.13 -3.04 5.33 -26.73 -0.14 -3.19 16 3 C 0.22 5.49 2.03 -68.87 -0.14 5.35 16 4 H 0.00 0.07 7.67 -51.93 -0.40 -0.32 16 5 C -0.49 -13.50 8.78 -34.44 -0.30 -13.80 16 6 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 7 C 0.05 1.48 5.29 -17.82 -0.09 1.39 16 8 N -0.90 -25.65 11.29 55.43 0.63 -25.03 16 9 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 10 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 13 N -0.67 -14.50 6.29 -107.96 -0.68 -15.18 16 14 C 0.04 0.66 4.84 -3.83 -0.02 0.64 16 15 C 0.13 2.03 2.64 -27.88 -0.07 1.95 16 16 H 0.11 1.72 5.75 -51.93 -0.30 1.42 16 17 O -0.54 -8.29 12.98 -35.23 -0.46 -8.75 16 18 C -0.05 -0.72 5.02 -104.63 -0.53 -1.25 16 19 C -0.11 -1.22 9.31 -39.58 -0.37 -1.59 16 20 C -0.08 -0.73 10.05 -39.58 -0.40 -1.13 16 21 C -0.13 -1.10 10.05 -39.58 -0.40 -1.50 16 22 C -0.07 -0.73 9.43 -39.58 -0.37 -1.11 16 23 C -0.18 -2.27 5.37 -104.62 -0.56 -2.83 16 24 C 0.50 6.85 2.81 36.01 0.10 6.95 16 25 F -0.18 -2.25 15.98 2.25 0.04 -2.22 16 26 F -0.16 -2.58 13.53 2.25 0.03 -2.55 16 27 F -0.17 -2.44 15.59 2.25 0.04 -2.41 16 28 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.03 0.64 6.66 -51.93 -0.35 0.29 16 31 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.10 2.68 5.94 -51.93 -0.31 2.37 16 33 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 34 H 0.32 6.48 6.51 -39.29 -0.26 6.22 16 35 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 36 H 0.04 0.84 5.23 -51.93 -0.27 0.57 16 37 H 0.37 4.60 7.32 45.56 0.33 4.94 16 38 H 0.14 1.22 6.45 -52.49 -0.34 0.89 16 39 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 40 H 0.13 0.77 8.06 -52.49 -0.42 0.34 16 41 H 0.14 1.16 7.16 -52.49 -0.38 0.78 16 LS Contribution 340.61 15.07 5.13 5.13 Total: -1.00 -30.46 340.61 -7.57 -38.03 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -4.34 Total: 9.29 kcal Atomic # 6 Polarization: -9.84 SS G_CDS: -2.93 Total: -12.77 kcal Atomic # 7 Polarization: -40.16 SS G_CDS: -0.05 Total: -40.21 kcal Atomic # 8 Polarization: -8.29 SS G_CDS: -0.46 Total: -8.75 kcal Atomic # 9 Polarization: -7.27 SS G_CDS: 0.10 Total: -7.17 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.46 -7.57 -38.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846995015.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.233 kcal (2) G-P(sol) polarization free energy of solvation -30.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds