Wall clock time and date at job start Tue Mar 31 2020 13:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47205 * 2 1 4 4 H 1.08999 * 109.47241 * 305.90323 * 3 2 1 5 5 C 1.50698 * 109.47209 * 185.89889 * 3 2 1 6 6 H 1.08000 * 120.00296 * 240.00194 * 5 3 2 7 7 C 1.37877 * 119.99814 * 60.00063 * 5 3 2 8 8 N 1.31515 * 120.00004 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 120.00013 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47129 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47222 * 120.00202 * 9 7 5 12 12 H 1.48507 * 109.46838 * 240.00200 * 9 7 5 13 13 N 1.46905 * 109.47096 * 65.90122 * 3 2 1 14 14 C 1.46896 * 111.00068 * 208.59873 * 13 3 2 15 15 C 1.53002 * 109.47261 * 175.20968 * 14 13 3 16 16 H 1.09004 * 109.46803 * 304.99436 * 15 14 13 17 17 O 1.42900 * 109.46916 * 64.98944 * 15 14 13 18 18 C 1.50698 * 109.47476 * 184.99423 * 15 14 13 19 19 C 1.38254 * 119.99802 * 267.60254 * 18 15 14 20 20 C 1.38213 * 119.99925 * 180.02562 * 19 18 15 21 21 C 1.38258 * 120.00189 * 359.97438 * 20 19 18 22 22 C 1.38214 * 119.99960 * 359.95694 * 21 20 19 23 23 C 1.38214 * 120.00326 * 87.32365 * 18 15 14 24 24 C 1.50710 * 119.99522 * 0.02562 * 23 18 15 25 25 F 1.39896 * 109.46797 * 183.19061 * 24 23 18 26 26 F 1.39895 * 109.47064 * 303.18981 * 24 23 18 27 27 F 1.39901 * 109.47132 * 63.19098 * 24 23 18 28 28 H 1.09000 * 109.47617 * 174.66228 * 1 2 3 29 29 H 1.08999 * 109.47186 * 54.66323 * 1 2 3 30 30 H 1.09005 * 109.46714 * 294.66511 * 1 2 3 31 31 H 1.09001 * 109.46887 * 120.00785 * 2 1 3 32 32 H 1.08998 * 109.46480 * 239.99833 * 2 1 3 33 33 H 0.96998 * 119.99777 * 180.02562 * 8 7 5 34 34 H 1.00896 * 110.99535 * 332.55585 * 13 3 2 35 35 H 1.08998 * 109.47628 * 295.21636 * 14 13 3 36 36 H 1.09002 * 109.46768 * 55.21123 * 14 13 3 37 37 H 0.96705 * 113.99317 * 60.00113 * 17 15 14 38 38 H 1.07998 * 120.00123 * 359.97438 * 19 18 15 39 39 H 1.08005 * 119.99999 * 179.97438 * 20 19 18 40 40 H 1.07996 * 120.00125 * 179.97438 * 21 20 19 41 41 H 1.07994 * 120.00035 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5930 1.9859 -0.8324 5 6 3.5399 1.4449 -0.1460 6 1 4.1567 1.8854 0.6234 7 6 4.1248 0.8848 -1.2619 8 7 3.3737 0.3489 -2.1990 9 14 5.9841 0.8873 -1.4426 10 1 6.5954 1.5462 -0.2606 11 1 6.4739 -0.5113 -1.5388 12 1 6.3608 1.6294 -2.6725 13 7 1.6701 2.0926 1.2643 14 6 1.5054 3.5410 1.0830 15 6 1.0058 4.1648 2.3877 16 1 0.0935 3.6602 2.7056 17 8 2.0063 4.0214 3.3979 18 6 0.7201 5.6280 2.1678 19 6 1.7011 6.5693 2.4190 20 6 1.4388 7.9113 2.2179 21 6 0.1957 8.3125 1.7649 22 6 -0.7846 7.3714 1.5124 23 6 -0.5208 6.0286 1.7095 24 6 -1.5883 5.0020 1.4302 25 9 -2.7216 5.6372 0.9112 26 9 -1.1090 4.0716 0.5020 27 9 -1.9252 4.3445 2.6182 28 1 -0.3634 -1.0232 -0.0956 29 1 -0.3633 0.5944 -0.8383 30 1 -0.3633 0.4289 0.9340 31 1 1.8933 -0.5140 0.8899 32 1 1.8932 -0.5139 -0.8900 33 1 3.7853 -0.0455 -2.9839 34 1 0.8354 1.6796 1.6525 35 1 2.4635 3.9845 0.8117 36 1 0.7811 3.7279 0.2902 37 1 2.8473 4.4470 3.1818 38 1 2.6720 6.2560 2.7732 39 1 2.2050 8.6467 2.4145 40 1 -0.0094 9.3612 1.6082 41 1 -1.7555 7.6847 1.1582 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000846995015.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:20 Heat of formation + Delta-G solvation = -194.358150 kcal Electronic energy + Delta-G solvation = -27979.207506 eV Core-core repulsion = 23636.169949 eV Total energy + Delta-G solvation = -4343.037557 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -51.34143 -48.83900 -48.78278 -40.91707 -38.65218 -37.37049 -34.41779 -33.49233 -32.79012 -32.17065 -29.34618 -27.79859 -26.81915 -24.95786 -23.84002 -23.17140 -22.23013 -21.40719 -19.65166 -19.60704 -19.54743 -18.38368 -18.00794 -17.12015 -16.72147 -16.53672 -16.04813 -15.88535 -15.81089 -15.49924 -15.48781 -15.41034 -15.17904 -14.91361 -14.80595 -14.62681 -14.33619 -14.09885 -13.86385 -13.67494 -13.52073 -13.11358 -12.98802 -12.73613 -12.68287 -12.50463 -12.31782 -12.04807 -11.98070 -11.78774 -11.54968 -11.03965 -10.97259 -10.42919 -10.23225 -9.88681 -8.98432 -8.05654 -6.17919 -0.11543 0.21534 1.40953 1.43110 1.55024 1.57123 2.44038 2.46097 2.62154 2.92742 3.17528 3.25482 3.31256 3.40524 3.76156 3.93263 3.99961 4.05917 4.18165 4.37732 4.39265 4.46099 4.53012 4.61841 4.67513 4.78882 4.85086 4.91672 5.07489 5.17977 5.20481 5.32380 5.35330 5.37795 5.56248 5.74573 5.79033 5.87079 6.35092 6.48115 6.71950 6.93056 6.96145 7.50993 8.98041 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.014804 B = 0.004440 C = 0.003846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.981792 B = 6304.105564 C = 7279.209698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.122 4.122 3 C 0.225 3.775 4 H -0.033 1.033 5 C -0.507 4.507 6 H 0.052 0.948 7 C 0.007 3.993 8 N -0.922 5.922 9 Si 0.958 3.042 10 H -0.268 1.268 11 H -0.282 1.282 12 H -0.282 1.282 13 N -0.675 5.675 14 C 0.041 3.959 15 C 0.147 3.853 16 H 0.096 0.904 17 O -0.547 6.547 18 C -0.079 4.079 19 C -0.121 4.121 20 C -0.078 4.078 21 C -0.117 4.117 22 C -0.078 4.078 23 C -0.195 4.195 24 C 0.500 3.500 25 F -0.174 7.174 26 F -0.182 7.182 27 F -0.180 7.180 28 H 0.059 0.941 29 H 0.034 0.966 30 H 0.052 0.948 31 H 0.037 0.963 32 H 0.070 0.930 33 H 0.260 0.740 34 H 0.323 0.677 35 H 0.062 0.938 36 H 0.035 0.965 37 H 0.385 0.615 38 H 0.149 0.851 39 H 0.167 0.833 40 H 0.169 0.831 41 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.284 17.477 8.706 21.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.161 4.161 3 C 0.117 3.883 4 H -0.016 1.016 5 C -0.546 4.546 6 H 0.071 0.929 7 C -0.191 4.191 8 N -0.563 5.563 9 Si 0.784 3.216 10 H -0.192 1.192 11 H -0.207 1.207 12 H -0.208 1.208 13 N -0.306 5.306 14 C -0.089 4.089 15 C 0.087 3.913 16 H 0.113 0.887 17 O -0.354 6.354 18 C -0.081 4.081 19 C -0.139 4.139 20 C -0.095 4.095 21 C -0.135 4.135 22 C -0.096 4.096 23 C -0.196 4.196 24 C 0.446 3.554 25 F -0.155 7.155 26 F -0.163 7.163 27 F -0.162 7.162 28 H 0.078 0.922 29 H 0.053 0.947 30 H 0.071 0.929 31 H 0.056 0.944 32 H 0.088 0.912 33 H 0.069 0.931 34 H 0.141 0.859 35 H 0.080 0.920 36 H 0.053 0.947 37 H 0.235 0.765 38 H 0.167 0.833 39 H 0.185 0.815 40 H 0.187 0.813 41 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -8.113 17.074 9.046 20.956 hybrid contribution 0.156 -0.422 -1.381 1.452 sum -7.957 16.652 7.665 19.983 Atomic orbital electron populations 1.21744 0.96583 1.01114 1.00171 1.21623 0.93970 0.99186 1.01328 1.18968 0.94355 0.90521 0.84433 1.01552 1.21491 0.92572 1.36537 1.04022 0.92932 1.25723 1.02427 0.95329 0.95575 1.70022 1.36223 1.40137 1.09885 0.85503 0.80570 0.77666 0.77841 1.19217 1.20745 1.20783 1.60581 1.38938 1.01936 1.29168 1.22683 1.00153 0.90363 0.95720 1.20853 0.92321 0.89987 0.88175 0.88675 1.86588 1.25384 1.80133 1.43328 1.20368 0.93429 0.96987 0.97282 1.21240 0.99199 0.93281 1.00146 1.21804 0.97856 0.95548 0.94300 1.21615 0.92469 1.01091 0.98309 1.21295 1.01657 0.90088 0.96522 1.19846 0.93994 0.94723 1.11067 1.18619 0.81599 0.81063 0.74099 1.93146 1.53711 1.81576 1.87095 1.93214 1.87507 1.68343 1.67247 1.93179 1.93055 1.82684 1.47235 0.92206 0.94720 0.92905 0.94378 0.91173 0.93120 0.85937 0.92004 0.94685 0.76541 0.83335 0.81534 0.81312 0.82926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.59 9.67 71.98 0.70 -4.89 16 2 C -0.12 -6.03 5.33 30.59 0.16 -5.86 16 3 C 0.23 11.71 2.03 44.16 0.09 11.80 16 4 H -0.03 -1.92 7.67 -2.39 -0.02 -1.94 16 5 C -0.51 -28.66 8.78 25.60 0.22 -28.44 16 6 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16 7 C 0.01 0.41 5.29 84.65 0.45 0.85 16 8 N -0.92 -53.92 11.29 21.45 0.24 -53.68 16 9 Si 0.96 44.40 29.54 68.60 2.03 46.43 16 10 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 11 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 12 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 13 N -0.67 -29.81 6.29 -495.46 -3.11 -32.92 16 14 C 0.04 1.57 4.84 86.30 0.42 1.98 16 15 C 0.15 4.58 2.64 29.85 0.08 4.66 16 16 H 0.10 3.15 5.75 -2.39 -0.01 3.14 16 17 O -0.55 -16.81 12.98 -148.98 -1.93 -18.74 16 18 C -0.08 -2.05 5.02 -19.87 -0.10 -2.15 16 19 C -0.12 -2.38 9.31 22.27 0.21 -2.17 16 20 C -0.08 -1.08 10.05 22.27 0.22 -0.86 16 21 C -0.12 -1.57 10.05 22.27 0.22 -1.35 16 22 C -0.08 -1.42 9.43 22.27 0.21 -1.21 16 23 C -0.19 -4.80 5.37 -19.86 -0.11 -4.91 16 24 C 0.50 13.71 2.81 71.24 0.20 13.91 16 25 F -0.17 -4.30 15.98 44.97 0.72 -3.58 16 26 F -0.18 -5.93 13.53 44.97 0.61 -5.32 16 27 F -0.18 -5.11 15.59 44.97 0.70 -4.41 16 28 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.05 1.92 6.66 -2.38 -0.02 1.90 16 31 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.07 3.89 5.94 -2.39 -0.01 3.87 16 33 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 34 H 0.32 13.43 6.51 -89.70 -0.58 12.85 16 35 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 36 H 0.04 1.42 5.23 -2.39 -0.01 1.41 16 37 H 0.38 9.32 7.32 -74.05 -0.54 8.78 16 38 H 0.15 2.40 6.45 -2.91 -0.02 2.38 16 39 H 0.17 1.19 8.06 -2.91 -0.02 1.17 16 40 H 0.17 1.05 8.06 -2.91 -0.02 1.03 16 41 H 0.15 2.21 7.16 -2.91 -0.02 2.19 16 Total: -1.00 -67.33 340.61 2.19 -65.15 By element: Atomic # 1 Polarization: 25.75 SS G_CDS: -0.04 Total: 25.71 kcal Atomic # 6 Polarization: -21.61 SS G_CDS: 2.98 Total: -18.63 kcal Atomic # 7 Polarization: -83.73 SS G_CDS: -2.87 Total: -86.60 kcal Atomic # 8 Polarization: -16.81 SS G_CDS: -1.93 Total: -18.74 kcal Atomic # 9 Polarization: -15.34 SS G_CDS: 2.03 Total: -13.31 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -67.33 2.19 -65.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846995015.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.212 kcal (2) G-P(sol) polarization free energy of solvation -67.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds