Wall clock time and date at job start Tue Mar 31 2020 12:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47403 * 39.04699 * 3 2 1 5 5 C 1.37095 * 120.00033 * 264.04993 * 4 3 2 6 6 H 1.08007 * 120.00081 * 191.64560 * 5 4 3 7 7 C 1.38948 * 120.00162 * 11.64324 * 5 4 3 8 8 N 1.31407 * 119.99833 * 28.15598 * 7 5 4 9 9 Si 1.86803 * 120.00137 * 208.15597 * 7 5 4 10 10 H 1.48497 * 109.47018 * 94.99067 * 9 7 5 11 11 H 1.48496 * 109.47145 * 214.99313 * 9 7 5 12 12 H 1.48499 * 109.46791 * 334.99235 * 9 7 5 13 13 C 1.34778 * 119.99902 * 84.04862 * 4 3 2 14 14 O 1.21291 * 120.00155 * 4.46626 * 13 4 3 15 15 C 1.50706 * 120.00084 * 184.46923 * 13 4 3 16 16 C 1.53000 * 109.46927 * 53.35520 * 15 13 4 17 17 C 1.52999 * 109.46906 * 293.35850 * 15 13 4 18 18 O 1.42900 * 109.47212 * 173.35650 * 15 13 4 19 19 C 1.35981 * 116.99755 * 303.46397 * 18 15 13 20 20 C 1.38699 * 120.00542 * 1.35262 * 19 18 15 21 21 C 1.38130 * 120.00049 * 180.23334 * 20 19 18 22 22 C 1.38696 * 120.00133 * 359.49037 * 21 20 19 23 23 O 1.35986 * 119.99756 * 180.27920 * 22 21 20 24 24 C 1.42902 * 116.99678 * 179.97438 * 23 22 21 25 25 C 1.38697 * 120.00082 * 0.25466 * 22 21 20 26 26 C 1.38139 * 119.99588 * 0.02562 * 25 22 21 27 27 H 4.40635 * 5.51417 * 180.02562 * 4 1 2 28 28 H 1.08997 * 109.47256 * 279.04364 * 3 2 1 29 29 H 1.09000 * 109.46970 * 159.04775 * 3 2 1 30 30 H 0.97003 * 119.99861 * 179.97438 * 8 7 5 31 31 H 1.09005 * 109.46696 * 192.15357 * 16 15 13 32 32 H 1.09000 * 109.47131 * 312.14944 * 16 15 13 33 33 H 1.09000 * 109.47262 * 72.15279 * 16 15 13 34 34 H 1.09004 * 109.46517 * 291.09050 * 17 15 13 35 35 H 1.08995 * 109.47216 * 51.08671 * 17 15 13 36 36 H 1.09000 * 109.47245 * 171.09199 * 17 15 13 37 37 H 1.08005 * 119.99536 * 0.02562 * 20 19 18 38 38 H 1.08004 * 119.99779 * 179.77071 * 21 20 19 39 39 H 1.08996 * 109.46962 * 179.97438 * 24 23 22 40 40 H 1.08999 * 109.46835 * 300.00080 * 24 23 22 41 41 H 1.09000 * 109.47035 * 59.99663 * 24 23 22 42 42 H 1.07996 * 120.00438 * 180.02562 * 25 22 21 43 43 H 1.08003 * 119.99584 * 180.02562 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1348 -1.0718 -0.8701 5 6 3.4799 -2.2856 -0.3342 6 1 4.0127 -3.0088 -0.9339 7 6 3.1443 -2.5854 0.9803 8 7 2.0869 -2.0326 1.5309 9 14 4.1962 -3.7743 1.9650 10 1 5.1879 -3.0118 2.7652 11 1 3.3293 -4.5656 2.8747 12 1 4.9075 -4.6905 1.0378 13 6 3.2453 -0.8651 -2.1973 14 8 3.0177 0.2322 -2.6613 15 6 3.6515 -1.9975 -3.1050 16 6 2.7291 -3.1954 -2.8701 17 6 5.0965 -2.3996 -2.8033 18 8 3.5485 -1.5768 -4.4668 19 6 2.3382 -1.1151 -4.8804 20 6 1.2809 -1.0422 -3.9856 21 6 0.0502 -0.5776 -4.4069 22 6 -0.1255 -0.1741 -5.7222 23 8 -1.3355 0.2886 -6.1355 24 6 -1.4448 0.6875 -7.5034 25 6 0.9332 -0.2419 -6.6158 26 6 2.1623 -0.7120 -6.1958 27 1 -1.0498 -0.0001 -0.0004 28 1 3.0094 -0.1607 1.0149 29 1 3.0088 0.9605 -0.3675 30 1 1.8523 -2.2422 2.4485 31 1 3.1462 -4.0763 -3.3583 32 1 2.6403 -3.3811 -1.7997 33 1 1.7439 -2.9823 -3.2849 34 1 5.7690 -1.6021 -3.1194 35 1 5.2108 -2.5682 -1.7326 36 1 5.3393 -3.3149 -3.3432 37 1 1.4191 -1.3519 -2.9601 38 1 -0.7740 -0.5244 -3.7110 39 1 -2.4589 1.0348 -7.7007 40 1 -0.7388 1.4934 -7.7043 41 1 -1.2199 -0.1617 -8.1486 42 1 0.7965 0.0727 -7.6398 43 1 2.9868 -0.7644 -6.8915 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000847172348.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:09 Heat of formation + Delta-G solvation = 3.846854 kcal Electronic energy + Delta-G solvation = -27925.011261 eV Core-core repulsion = 24132.425258 eV Total energy + Delta-G solvation = -3792.586003 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.27460 -40.72163 -39.37761 -37.37945 -36.97371 -34.69821 -33.81461 -32.83842 -31.99638 -30.32953 -28.36177 -28.14481 -27.85450 -26.92637 -24.23392 -23.44397 -22.74792 -20.95597 -20.17361 -19.23758 -18.82572 -18.03177 -17.42512 -17.32991 -16.59184 -16.34637 -16.31386 -16.22312 -15.72786 -15.47433 -15.28146 -14.75489 -14.55376 -14.28265 -13.96107 -13.90081 -13.84283 -13.71513 -13.43793 -13.20222 -13.01517 -12.96657 -12.83635 -12.68811 -12.46212 -12.04813 -11.95205 -11.72973 -11.49389 -11.37798 -11.21737 -11.10407 -10.65920 -10.16610 -9.99233 -9.81197 -8.55976 -8.32846 -5.84169 0.34351 0.56371 1.41449 1.54657 1.63642 1.79867 2.03378 2.28625 2.31510 2.37452 2.48826 2.81269 2.98838 3.07808 3.83309 3.86757 3.91379 3.98166 4.02928 4.11328 4.20263 4.35049 4.44511 4.45119 4.64242 4.67434 4.74474 4.76722 4.82749 4.83552 4.88461 4.94693 5.00147 5.11619 5.19463 5.30926 5.32927 5.39046 5.48897 5.56224 5.67891 5.69909 6.32305 6.39035 6.58679 7.05741 7.09318 7.48861 7.90876 8.67123 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.018064 B = 0.004676 C = 0.004074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.642396 B = 5986.867188 C = 6871.453325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.150 4.150 3 C 0.239 3.761 4 N -0.432 5.432 5 C -0.379 4.379 6 H 0.141 0.859 7 C 0.009 3.991 8 N -0.862 5.862 9 Si 0.973 3.027 10 H -0.277 1.277 11 H -0.291 1.291 12 H -0.249 1.249 13 C 0.426 3.574 14 O -0.621 6.621 15 C 0.115 3.885 16 C -0.200 4.200 17 C -0.143 4.143 18 O -0.304 6.304 19 C 0.095 3.905 20 C -0.145 4.145 21 C -0.140 4.140 22 C 0.082 3.918 23 O -0.338 6.338 24 C 0.018 3.982 25 C -0.168 4.168 26 C -0.124 4.124 27 H 0.232 0.768 28 H 0.102 0.898 29 H 0.060 0.940 30 H 0.271 0.729 31 H 0.087 0.913 32 H 0.109 0.891 33 H 0.051 0.949 34 H 0.061 0.939 35 H 0.106 0.894 36 H 0.093 0.907 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.119 0.881 40 H 0.062 0.938 41 H 0.068 0.932 42 H 0.168 0.832 43 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.815 -1.588 -10.960 11.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.270 4.270 2 C -0.151 4.151 3 C 0.116 3.884 4 N -0.150 5.150 5 C -0.504 4.504 6 H 0.158 0.842 7 C -0.197 4.197 8 N -0.497 5.497 9 Si 0.797 3.203 10 H -0.203 1.203 11 H -0.218 1.218 12 H -0.172 1.172 13 C 0.215 3.785 14 O -0.509 6.509 15 C 0.074 3.926 16 C -0.257 4.257 17 C -0.200 4.200 18 O -0.218 6.218 19 C 0.050 3.950 20 C -0.164 4.164 21 C -0.159 4.159 22 C 0.037 3.963 23 O -0.253 6.253 24 C -0.077 4.077 25 C -0.186 4.186 26 C -0.143 4.143 27 H 0.249 0.751 28 H 0.120 0.880 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.106 0.894 32 H 0.127 0.873 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.124 0.876 36 H 0.112 0.888 37 H 0.136 0.864 38 H 0.137 0.863 39 H 0.137 0.863 40 H 0.081 0.919 41 H 0.087 0.913 42 H 0.185 0.815 43 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -1.001 -1.060 -10.983 11.080 hybrid contribution -0.148 -0.213 1.175 1.203 sum -1.149 -1.273 -9.808 9.957 Atomic orbital electron populations 1.25095 0.96341 1.02740 1.02810 1.23502 0.95096 0.98150 0.98348 1.18013 0.84496 0.89786 0.96076 1.43893 1.54584 1.12338 1.04174 1.20450 1.37390 0.94904 0.97626 0.84247 1.26034 0.95480 0.99821 0.98410 1.70314 1.20707 1.43781 1.14925 0.85203 0.78319 0.78228 0.78515 1.20307 1.21772 1.17213 1.20996 0.83762 0.90335 0.83370 1.90604 1.57923 1.27060 1.75358 1.21541 1.00100 0.92105 0.78837 1.23021 0.98795 0.96856 1.07049 1.22084 0.90029 1.02827 1.05029 1.86031 1.29965 1.78006 1.27797 1.18988 0.84633 0.97276 0.94082 1.21327 0.93113 1.02622 0.99313 1.20241 0.97492 1.03554 0.94626 1.18842 0.85775 0.98420 0.93263 1.86037 1.29116 1.79031 1.31148 1.23346 1.04888 1.00387 0.79040 1.21217 0.91647 1.04913 1.00842 1.20441 0.98835 1.02085 0.92898 0.75094 0.87990 0.92149 0.91859 0.89431 0.87262 0.92975 0.92033 0.87627 0.88783 0.86439 0.86262 0.86307 0.91935 0.91343 0.81477 0.83030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -11.19 19.25 74.32 1.43 -9.76 16 2 C -0.15 -7.35 11.85 31.13 0.37 -6.98 16 3 C 0.24 11.65 5.10 84.57 0.43 12.08 16 4 N -0.43 -20.70 2.60 -645.42 -1.68 -22.38 16 5 C -0.38 -17.01 6.25 84.04 0.53 -16.48 16 6 H 0.14 5.66 3.54 -2.91 -0.01 5.65 16 7 C 0.01 0.39 4.75 84.93 0.40 0.79 16 8 N -0.86 -41.83 9.76 21.66 0.21 -41.62 16 9 Si 0.97 35.51 29.64 68.60 2.03 37.55 16 10 H -0.28 -10.18 7.11 99.48 0.71 -9.47 16 11 H -0.29 -10.96 7.11 99.48 0.71 -10.26 16 12 H -0.25 -8.35 7.11 99.48 0.71 -7.64 16 13 C 0.43 20.37 4.19 87.66 0.37 20.74 16 14 O -0.62 -33.63 13.70 15.89 0.22 -33.41 16 15 C 0.12 4.65 0.84 -11.54 -0.01 4.64 16 16 C -0.20 -7.56 7.76 71.98 0.56 -7.00 16 17 C -0.14 -4.76 8.50 71.98 0.61 -4.14 16 18 O -0.30 -12.54 9.63 -74.38 -0.72 -13.26 16 19 C 0.10 3.89 5.48 22.49 0.12 4.01 16 20 C -0.14 -6.34 5.68 22.35 0.13 -6.22 16 21 C -0.14 -5.64 9.98 22.35 0.22 -5.41 16 22 C 0.08 2.78 6.69 22.49 0.15 2.93 16 23 O -0.34 -10.02 10.50 -93.39 -0.98 -11.01 16 24 C 0.02 0.31 9.81 113.37 1.11 1.42 16 25 C -0.17 -4.95 9.03 22.36 0.20 -4.74 16 26 C -0.12 -4.14 9.98 22.36 0.22 -3.92 16 27 H 0.23 8.18 7.80 -4.43 -0.03 8.14 16 28 H 0.10 4.98 6.22 -2.39 -0.01 4.97 16 29 H 0.06 2.95 7.55 -2.39 -0.02 2.94 16 30 H 0.27 12.64 8.31 -92.71 -0.77 11.87 16 31 H 0.09 2.72 8.00 -2.38 -0.02 2.70 16 32 H 0.11 4.47 4.54 -2.39 -0.01 4.46 16 33 H 0.05 2.09 5.05 -2.39 -0.01 2.07 16 34 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16 35 H 0.11 3.56 5.03 -2.39 -0.01 3.55 16 36 H 0.09 2.52 8.02 -2.39 -0.02 2.50 16 37 H 0.12 5.74 3.84 -2.91 -0.01 5.73 16 38 H 0.12 4.72 8.06 -2.91 -0.02 4.69 16 39 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.06 0.99 7.66 -2.39 -0.02 0.97 16 41 H 0.07 1.00 7.66 -2.39 -0.02 0.98 16 42 H 0.17 3.43 6.29 -2.91 -0.02 3.41 16 43 H 0.15 4.17 8.06 -2.91 -0.02 4.15 16 Total: -1.00 -64.24 344.19 6.98 -57.26 By element: Atomic # 1 Polarization: 43.86 SS G_CDS: 1.05 Total: 44.91 kcal Atomic # 6 Polarization: -24.89 SS G_CDS: 6.85 Total: -18.04 kcal Atomic # 7 Polarization: -62.53 SS G_CDS: -1.47 Total: -64.00 kcal Atomic # 8 Polarization: -56.20 SS G_CDS: -1.48 Total: -57.68 kcal Atomic # 14 Polarization: 35.51 SS G_CDS: 2.03 Total: 37.55 kcal Total: -64.24 6.98 -57.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847172348.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.109 kcal (2) G-P(sol) polarization free energy of solvation -64.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds