Wall clock time and date at job start Tue Mar 31 2020 12:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46532 * 151.50860 * 3 2 1 5 5 C 1.37095 * 119.99747 * 90.03780 * 4 3 2 6 6 H 1.08008 * 120.00161 * 173.75770 * 5 4 3 7 7 C 1.38951 * 120.00448 * 353.75695 * 5 4 3 8 8 N 1.31419 * 119.99681 * 332.20274 * 7 5 4 9 9 Si 1.86797 * 120.00416 * 152.20296 * 7 5 4 10 10 H 1.48501 * 109.47076 * 94.99016 * 9 7 5 11 11 H 1.48494 * 109.47120 * 214.99126 * 9 7 5 12 12 H 1.48503 * 109.46804 * 334.99494 * 9 7 5 13 13 C 1.34780 * 120.00088 * 270.02951 * 4 3 2 14 14 O 1.21291 * 119.99690 * 183.81083 * 13 4 3 15 15 C 1.50697 * 119.99767 * 3.81211 * 13 4 3 16 16 H 1.09001 * 109.47361 * 22.58247 * 15 13 4 17 17 O 1.42898 * 109.47071 * 142.58145 * 15 13 4 18 18 C 1.35901 * 117.00021 * 214.48907 * 17 15 13 19 19 C 1.38740 * 120.05356 * 183.08289 * 18 17 15 20 20 C 1.38140 * 119.93952 * 179.74455 * 19 18 17 21 21 C 1.38265 * 120.05819 * 0.51065 * 20 19 18 22 22 C 1.38264 * 120.11236 * 359.76226 * 21 20 19 23 23 C 1.38146 * 120.05320 * 359.97438 * 22 21 20 24 24 C 1.53003 * 109.47084 * 262.58091 * 15 13 4 25 25 C 1.52994 * 109.47133 * 174.10332 * 24 15 13 26 26 C 1.52998 * 109.47000 * 54.10009 * 24 15 13 27 27 O 1.42905 * 109.46966 * 294.10419 * 24 15 13 28 28 H 4.40636 * 5.51432 * 179.97438 * 4 1 2 29 29 H 1.08994 * 109.47404 * 31.51266 * 3 2 1 30 30 H 1.08998 * 109.47276 * 271.50496 * 3 2 1 31 31 H 0.96994 * 119.99549 * 180.02562 * 8 7 5 32 32 H 1.08001 * 120.02355 * 359.97438 * 19 18 17 33 33 H 1.08004 * 119.97133 * 180.23039 * 20 19 18 34 34 H 1.08000 * 119.94911 * 179.74807 * 21 20 19 35 35 H 1.08003 * 119.97677 * 179.97438 * 22 21 20 36 36 H 1.08009 * 120.02658 * 179.97438 * 23 22 21 37 37 H 1.09004 * 109.47263 * 59.99733 * 25 24 15 38 38 H 1.08996 * 109.46978 * 299.99763 * 25 24 15 39 39 H 1.09002 * 109.47168 * 179.97438 * 25 24 15 40 40 H 1.09003 * 109.46652 * 186.87522 * 26 24 15 41 41 H 1.08997 * 109.47397 * 306.86958 * 26 24 15 42 42 H 1.09001 * 109.46890 * 66.87677 * 26 24 15 43 43 H 0.96699 * 114.00015 * 180.02562 * 27 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.2149 -0.6589 5 6 3.3623 2.3491 0.0764 6 1 3.8162 3.2119 -0.3886 7 6 3.0102 2.3889 1.4200 8 7 2.0216 1.6446 1.8625 9 14 3.9420 3.5002 2.5974 10 1 3.2207 4.7909 2.7352 11 1 4.0395 2.8433 3.9255 12 1 5.3065 3.7498 2.0671 13 6 3.3577 1.2168 -1.9880 14 8 3.8266 2.1995 -2.5225 15 6 3.0255 -0.0019 -2.8098 16 1 2.2789 -0.6000 -2.2874 17 8 2.5075 0.4053 -4.0777 18 6 1.5435 -0.3770 -4.6305 19 6 1.0416 -0.0767 -5.8886 20 6 0.0655 -0.8766 -6.4505 21 6 -0.4188 -1.9695 -5.7558 22 6 0.0758 -2.2677 -4.4995 23 6 1.0558 -1.4741 -3.9355 24 6 4.2910 -0.8358 -3.0199 25 6 3.9286 -2.1437 -3.7261 26 6 4.9272 -1.1477 -1.6638 27 8 5.2174 -0.1016 -3.8229 28 1 -1.0502 -0.0004 0.0000 29 1 3.0098 -0.8752 -0.5371 30 1 3.0094 -0.0262 1.0273 31 1 1.7756 1.6726 2.8003 32 1 1.4164 0.7796 -6.4296 33 1 -0.3229 -0.6454 -7.4314 34 1 -1.1848 -2.5914 -6.1950 35 1 -0.3044 -3.1218 -3.9587 36 1 1.4415 -1.7072 -2.9539 37 1 3.4753 -1.9214 -4.6922 38 1 3.2220 -2.7036 -3.1136 39 1 4.8302 -2.7375 -3.8762 40 1 5.8900 -1.6349 -1.8177 41 1 5.0736 -0.2208 -1.1093 42 1 4.2712 -1.8097 -1.0985 43 1 6.0447 -0.5707 -3.9975 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847179487.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:25 Heat of formation + Delta-G solvation = -2.437989 kcal Electronic energy + Delta-G solvation = -28148.698528 eV Core-core repulsion = 24355.839994 eV Total energy + Delta-G solvation = -3792.858534 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.63515 -38.86031 -37.38062 -36.54393 -35.17743 -32.65584 -31.89919 -31.26085 -30.79445 -29.87906 -27.68319 -27.13688 -26.37678 -24.44465 -22.61204 -22.00672 -20.88246 -18.95490 -18.38370 -18.00222 -16.77614 -16.38680 -16.27670 -15.92697 -15.56801 -15.26370 -14.61681 -14.37440 -14.07927 -13.97241 -13.81830 -13.68888 -13.35614 -12.92591 -12.81628 -12.55018 -12.37686 -12.07011 -11.86079 -11.75257 -11.68899 -11.50152 -11.39658 -11.24814 -11.00087 -10.58915 -10.55048 -10.42032 -10.26198 -9.80789 -9.44450 -9.29497 -8.91993 -8.87646 -8.41902 -7.99665 -7.88533 -6.42868 -3.83478 1.45215 1.59804 3.02356 3.20517 3.25610 3.31508 3.75220 3.77895 3.91730 3.95764 4.16568 4.33675 4.67011 4.84716 4.93368 4.96549 5.00927 5.08248 5.16064 5.22234 5.34460 5.39129 5.48877 5.53507 5.62617 5.68686 5.76081 5.80568 5.84876 6.01699 6.09672 6.13023 6.19150 6.43724 6.47673 6.53498 6.62423 6.67208 6.91197 6.94307 7.51940 7.66393 7.90227 8.01087 8.37556 8.72704 9.07976 9.28286 9.83376 10.57885 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016263 B = 0.004925 C = 0.004420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.240201 B = 5684.331003 C = 6333.213824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.123 4.123 3 C 0.216 3.784 4 N -0.436 5.436 5 C -0.316 4.316 6 H 0.109 0.891 7 C 0.034 3.966 8 N -0.855 5.855 9 Si 0.915 3.085 10 H -0.279 1.279 11 H -0.282 1.282 12 H -0.267 1.267 13 C 0.457 3.543 14 O -0.546 6.546 15 C 0.084 3.916 16 H 0.099 0.901 17 O -0.269 6.269 18 C 0.140 3.860 19 C -0.157 4.157 20 C -0.082 4.082 21 C -0.170 4.170 22 C -0.078 4.078 23 C -0.214 4.214 24 C 0.118 3.882 25 C -0.183 4.183 26 C -0.193 4.193 27 O -0.529 6.529 28 H 0.200 0.800 29 H 0.065 0.935 30 H 0.117 0.883 31 H 0.269 0.731 32 H 0.129 0.871 33 H 0.125 0.875 34 H 0.119 0.881 35 H 0.121 0.879 36 H 0.129 0.871 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.062 0.938 40 H 0.066 0.934 41 H 0.084 0.916 42 H 0.071 0.929 43 H 0.366 0.634 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.969 -12.784 -7.930 15.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.270 4.270 2 C -0.125 4.125 3 C 0.093 3.907 4 N -0.157 5.157 5 C -0.443 4.443 6 H 0.127 0.873 7 C -0.170 4.170 8 N -0.493 5.493 9 Si 0.741 3.259 10 H -0.205 1.205 11 H -0.207 1.207 12 H -0.192 1.192 13 C 0.243 3.757 14 O -0.426 6.426 15 C 0.024 3.976 16 H 0.116 0.884 17 O -0.180 6.180 18 C 0.094 3.906 19 C -0.175 4.175 20 C -0.100 4.100 21 C -0.188 4.188 22 C -0.096 4.096 23 C -0.232 4.232 24 C 0.076 3.924 25 C -0.240 4.240 26 C -0.250 4.250 27 O -0.333 6.333 28 H 0.217 0.783 29 H 0.083 0.917 30 H 0.135 0.865 31 H 0.079 0.921 32 H 0.147 0.853 33 H 0.143 0.857 34 H 0.137 0.863 35 H 0.139 0.861 36 H 0.146 0.854 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.085 0.915 41 H 0.103 0.897 42 H 0.089 0.911 43 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -1.178 -11.656 -8.060 14.220 hybrid contribution 0.262 -0.144 1.062 1.103 sum -0.916 -11.801 -6.998 13.750 Atomic orbital electron populations 1.24322 0.95397 1.02947 1.04361 1.23200 0.94379 0.97767 0.97107 1.18785 0.84501 0.86725 1.00689 1.43734 1.56390 1.10837 1.04745 1.19672 1.39287 0.94184 0.91143 0.87298 1.25198 0.95380 0.98444 0.97999 1.70191 1.22149 1.40795 1.16165 0.86108 0.80740 0.79818 0.79275 1.20472 1.20726 1.19188 1.19221 0.85985 0.88356 0.82111 1.90558 1.46818 1.35078 1.70172 1.22594 0.94020 0.96819 0.84155 0.88396 1.86312 1.49957 1.48010 1.33723 1.19264 0.88534 0.89984 0.92855 1.20449 1.00413 1.02556 0.94118 1.20904 0.95478 0.94264 0.99339 1.20965 1.02554 0.99329 0.95989 1.20881 0.95136 0.98491 0.95116 1.21346 1.02302 0.98146 1.01423 1.21513 0.89644 0.90239 0.90976 1.22697 1.02402 0.96942 1.01992 1.22795 1.01093 1.03911 0.97189 1.86855 1.29166 1.45164 1.72103 0.78283 0.91737 0.86534 0.92060 0.85255 0.85719 0.86315 0.86054 0.85362 0.91282 0.91474 0.91864 0.91522 0.89723 0.91064 0.78834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -5.15 19.25 29.55 0.57 -4.58 16 2 C -0.12 -2.70 10.96 -37.12 -0.41 -3.11 16 3 C 0.22 4.63 4.18 -6.83 -0.03 4.60 16 4 N -0.44 -10.87 2.11 -117.93 -0.25 -11.12 16 5 C -0.32 -8.63 9.43 -14.93 -0.14 -8.77 16 6 H 0.11 3.18 7.31 -52.48 -0.38 2.80 16 7 C 0.03 0.87 4.85 -17.46 -0.08 0.79 16 8 N -0.86 -21.76 9.31 55.50 0.52 -21.25 16 9 Si 0.91 20.07 29.63 -169.99 -5.04 15.04 16 10 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 11 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 12 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 13 C 0.46 11.45 5.30 -10.99 -0.06 11.39 16 14 O -0.55 -16.00 16.31 -11.17 -0.18 -16.18 16 15 C 0.08 1.69 1.47 -27.88 -0.04 1.65 16 16 H 0.10 1.83 3.04 -51.93 -0.16 1.67 16 17 O -0.27 -5.67 9.24 -45.11 -0.42 -6.09 16 18 C 0.14 2.44 5.33 -39.22 -0.21 2.23 16 19 C -0.16 -2.40 9.99 -39.43 -0.39 -2.80 16 20 C -0.08 -1.01 10.04 -39.61 -0.40 -1.41 16 21 C -0.17 -2.00 10.04 -39.56 -0.40 -2.39 16 22 C -0.08 -0.98 10.04 -39.61 -0.40 -1.38 16 23 C -0.21 -3.22 7.24 -39.44 -0.29 -3.51 16 24 C 0.12 1.93 0.87 -90.62 -0.08 1.86 16 25 C -0.18 -2.35 7.38 37.15 0.27 -2.08 16 26 C -0.19 -2.84 7.38 37.16 0.27 -2.57 16 27 O -0.53 -9.43 12.44 -49.32 -0.61 -10.04 16 28 H 0.20 3.35 7.80 -54.08 -0.42 2.92 16 29 H 0.06 1.14 3.43 -51.93 -0.18 0.96 16 30 H 0.12 2.61 6.23 -51.93 -0.32 2.29 16 31 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 32 H 0.13 1.91 8.06 -52.49 -0.42 1.49 16 33 H 0.12 1.18 8.06 -52.48 -0.42 0.76 16 34 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 35 H 0.12 1.22 8.06 -52.48 -0.42 0.79 16 36 H 0.13 1.90 4.64 -52.48 -0.24 1.65 16 37 H 0.07 0.98 6.30 -51.93 -0.33 0.65 16 38 H 0.07 0.77 6.95 -51.93 -0.36 0.41 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.08 1.55 6.07 -51.93 -0.32 1.23 16 42 H 0.07 0.92 6.38 -51.93 -0.33 0.58 16 43 H 0.37 4.53 9.05 45.56 0.41 4.94 16 LS Contribution 348.14 15.07 5.25 5.25 Total: -1.00 -33.97 348.14 -6.84 -40.81 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: -4.30 Total: 13.67 kcal Atomic # 6 Polarization: -8.28 SS G_CDS: -1.80 Total: -10.08 kcal Atomic # 7 Polarization: -32.63 SS G_CDS: 0.27 Total: -32.37 kcal Atomic # 8 Polarization: -31.10 SS G_CDS: -1.21 Total: -32.31 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.04 Total: 15.04 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.97 -6.84 -40.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847179487.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.372 kcal (2) G-P(sol) polarization free energy of solvation -33.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds