Wall clock time and date at job start Tue Mar 31 2020 12:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46532 * 151.50860 * 3 2 1 5 5 C 1.37095 * 119.99747 * 90.03780 * 4 3 2 6 6 H 1.08008 * 120.00161 * 173.75770 * 5 4 3 7 7 C 1.38951 * 120.00448 * 353.75695 * 5 4 3 8 8 N 1.31419 * 119.99681 * 332.20274 * 7 5 4 9 9 Si 1.86797 * 120.00416 * 152.20296 * 7 5 4 10 10 H 1.48501 * 109.47076 * 94.99016 * 9 7 5 11 11 H 1.48494 * 109.47120 * 214.99126 * 9 7 5 12 12 H 1.48503 * 109.46804 * 334.99494 * 9 7 5 13 13 C 1.34780 * 120.00088 * 270.02951 * 4 3 2 14 14 O 1.21291 * 119.99690 * 183.81083 * 13 4 3 15 15 C 1.50697 * 119.99767 * 3.81211 * 13 4 3 16 16 H 1.09001 * 109.47361 * 22.58247 * 15 13 4 17 17 O 1.42898 * 109.47071 * 142.58145 * 15 13 4 18 18 C 1.35901 * 117.00021 * 214.48907 * 17 15 13 19 19 C 1.38740 * 120.05356 * 183.08289 * 18 17 15 20 20 C 1.38140 * 119.93952 * 179.74455 * 19 18 17 21 21 C 1.38265 * 120.05819 * 0.51065 * 20 19 18 22 22 C 1.38264 * 120.11236 * 359.76226 * 21 20 19 23 23 C 1.38146 * 120.05320 * 359.97438 * 22 21 20 24 24 C 1.53003 * 109.47084 * 262.58091 * 15 13 4 25 25 C 1.52994 * 109.47133 * 174.10332 * 24 15 13 26 26 C 1.52998 * 109.47000 * 54.10009 * 24 15 13 27 27 O 1.42905 * 109.46966 * 294.10419 * 24 15 13 28 28 H 4.40636 * 5.51432 * 179.97438 * 4 1 2 29 29 H 1.08994 * 109.47404 * 31.51266 * 3 2 1 30 30 H 1.08998 * 109.47276 * 271.50496 * 3 2 1 31 31 H 0.96994 * 119.99549 * 180.02562 * 8 7 5 32 32 H 1.08001 * 120.02355 * 359.97438 * 19 18 17 33 33 H 1.08004 * 119.97133 * 180.23039 * 20 19 18 34 34 H 1.08000 * 119.94911 * 179.74807 * 21 20 19 35 35 H 1.08003 * 119.97677 * 179.97438 * 22 21 20 36 36 H 1.08009 * 120.02658 * 179.97438 * 23 22 21 37 37 H 1.09004 * 109.47263 * 59.99733 * 25 24 15 38 38 H 1.08996 * 109.46978 * 299.99763 * 25 24 15 39 39 H 1.09002 * 109.47168 * 179.97438 * 25 24 15 40 40 H 1.09003 * 109.46652 * 186.87522 * 26 24 15 41 41 H 1.08997 * 109.47397 * 306.86958 * 26 24 15 42 42 H 1.09001 * 109.46890 * 66.87677 * 26 24 15 43 43 H 0.96699 * 114.00015 * 180.02562 * 27 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.2149 -0.6589 5 6 3.3623 2.3491 0.0764 6 1 3.8162 3.2119 -0.3886 7 6 3.0102 2.3889 1.4200 8 7 2.0216 1.6446 1.8625 9 14 3.9420 3.5002 2.5974 10 1 3.2207 4.7909 2.7352 11 1 4.0395 2.8433 3.9255 12 1 5.3065 3.7498 2.0671 13 6 3.3577 1.2168 -1.9880 14 8 3.8266 2.1995 -2.5225 15 6 3.0255 -0.0019 -2.8098 16 1 2.2789 -0.6000 -2.2874 17 8 2.5075 0.4053 -4.0777 18 6 1.5435 -0.3770 -4.6305 19 6 1.0416 -0.0767 -5.8886 20 6 0.0655 -0.8766 -6.4505 21 6 -0.4188 -1.9695 -5.7558 22 6 0.0758 -2.2677 -4.4995 23 6 1.0558 -1.4741 -3.9355 24 6 4.2910 -0.8358 -3.0199 25 6 3.9286 -2.1437 -3.7261 26 6 4.9272 -1.1477 -1.6638 27 8 5.2174 -0.1016 -3.8229 28 1 -1.0502 -0.0004 0.0000 29 1 3.0098 -0.8752 -0.5371 30 1 3.0094 -0.0262 1.0273 31 1 1.7756 1.6726 2.8003 32 1 1.4164 0.7796 -6.4296 33 1 -0.3229 -0.6454 -7.4314 34 1 -1.1848 -2.5914 -6.1950 35 1 -0.3044 -3.1218 -3.9587 36 1 1.4415 -1.7072 -2.9539 37 1 3.4753 -1.9214 -4.6922 38 1 3.2220 -2.7036 -3.1136 39 1 4.8302 -2.7375 -3.8762 40 1 5.8900 -1.6349 -1.8177 41 1 5.0736 -0.2208 -1.1093 42 1 4.2712 -1.8097 -1.0985 43 1 6.0447 -0.5707 -3.9975 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000847179487.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:24 Heat of formation + Delta-G solvation = -24.792604 kcal Electronic energy + Delta-G solvation = -28149.667897 eV Core-core repulsion = 24355.839994 eV Total energy + Delta-G solvation = -3793.827903 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.04470 -40.32938 -38.81451 -37.82925 -37.10659 -34.33844 -33.43462 -33.04997 -31.85684 -31.01697 -29.12708 -28.45236 -27.96760 -26.27628 -23.69205 -23.12905 -22.37316 -20.52368 -19.85778 -19.62982 -18.51593 -17.98895 -17.56633 -17.27794 -16.98764 -16.67687 -16.26897 -15.75479 -15.72782 -15.29827 -15.12061 -15.03928 -14.51724 -14.32667 -14.22069 -14.17428 -13.84691 -13.61877 -13.22148 -13.16713 -13.02701 -12.82302 -12.65985 -12.56689 -12.45394 -12.32994 -12.13521 -11.76278 -11.61859 -11.23117 -11.11815 -11.05820 -10.67129 -10.28218 -9.94852 -9.91470 -9.09051 -8.41077 -5.90021 0.41668 0.52101 1.26965 1.40887 1.53498 1.59724 2.03308 2.19852 2.27523 2.37068 2.85445 2.89623 3.07816 3.15444 3.64550 3.70876 3.78656 3.81725 3.92758 3.97307 4.06245 4.13978 4.32067 4.41983 4.51175 4.57477 4.58469 4.71526 4.75406 4.78798 4.91383 4.93465 5.09036 5.11584 5.27353 5.34819 5.41692 5.44817 5.50985 5.61654 5.86582 5.96940 6.35517 6.50177 6.91934 7.07072 7.09027 7.32957 7.91175 8.57667 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016263 B = 0.004925 C = 0.004420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.240201 B = 5684.331003 C = 6333.213824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.164 4.164 3 C 0.219 3.781 4 N -0.439 5.439 5 C -0.360 4.360 6 H 0.072 0.928 7 C 0.013 3.987 8 N -0.859 5.859 9 Si 0.977 3.023 10 H -0.280 1.280 11 H -0.260 1.260 12 H -0.275 1.275 13 C 0.442 3.558 14 O -0.609 6.609 15 C 0.094 3.906 16 H 0.109 0.891 17 O -0.309 6.309 18 C 0.103 3.897 19 C -0.179 4.179 20 C -0.077 4.077 21 C -0.159 4.159 22 C -0.076 4.076 23 C -0.220 4.220 24 C 0.117 3.883 25 C -0.171 4.171 26 C -0.190 4.190 27 O -0.563 6.563 28 H 0.234 0.766 29 H 0.100 0.900 30 H 0.104 0.896 31 H 0.276 0.724 32 H 0.119 0.881 33 H 0.156 0.844 34 H 0.157 0.843 35 H 0.154 0.846 36 H 0.128 0.872 37 H 0.053 0.947 38 H 0.084 0.916 39 H 0.094 0.906 40 H 0.100 0.900 41 H 0.042 0.958 42 H 0.092 0.908 43 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.633 -16.124 -7.725 18.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.166 4.166 3 C 0.098 3.902 4 N -0.159 5.159 5 C -0.487 4.487 6 H 0.090 0.910 7 C -0.191 4.191 8 N -0.495 5.495 9 Si 0.800 3.200 10 H -0.206 1.206 11 H -0.185 1.185 12 H -0.200 1.200 13 C 0.231 3.769 14 O -0.494 6.494 15 C 0.034 3.966 16 H 0.127 0.873 17 O -0.222 6.222 18 C 0.058 3.942 19 C -0.198 4.198 20 C -0.095 4.095 21 C -0.177 4.177 22 C -0.094 4.094 23 C -0.238 4.238 24 C 0.076 3.924 25 C -0.228 4.228 26 C -0.247 4.247 27 O -0.370 6.370 28 H 0.250 0.750 29 H 0.117 0.883 30 H 0.122 0.878 31 H 0.086 0.914 32 H 0.137 0.863 33 H 0.174 0.826 34 H 0.174 0.826 35 H 0.171 0.829 36 H 0.145 0.855 37 H 0.072 0.928 38 H 0.102 0.898 39 H 0.113 0.887 40 H 0.119 0.881 41 H 0.061 0.939 42 H 0.110 0.890 43 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -2.867 -15.057 -7.832 17.212 hybrid contribution 0.647 0.889 0.952 1.454 sum -2.220 -14.168 -6.880 15.906 Atomic orbital electron populations 1.25179 0.96351 1.01189 1.02690 1.23487 0.95052 0.99370 0.98670 1.18840 0.84786 0.86487 1.00129 1.43847 1.55803 1.11175 1.05029 1.19491 1.41812 0.94763 0.92648 0.91004 1.25831 0.95360 0.99737 0.98216 1.70249 1.21701 1.40793 1.16740 0.85205 0.78838 0.78130 0.77795 1.20575 1.18456 1.20026 1.20193 0.84803 0.89478 0.82397 1.90489 1.49624 1.37860 1.71475 1.22466 0.96225 0.94247 0.83623 0.87337 1.86231 1.51717 1.50194 1.34032 1.19614 0.89205 0.91322 0.94065 1.20665 1.01791 1.03331 0.93973 1.21286 0.94005 0.93672 1.00494 1.21452 1.02186 0.98713 0.95342 1.21297 0.93834 0.98658 0.95585 1.21410 1.03157 0.97899 1.01341 1.21613 0.87978 0.90794 0.92047 1.22586 1.04168 0.95095 1.00915 1.22778 1.03398 1.02512 0.96036 1.86808 1.30679 1.46971 1.72559 0.74969 0.88285 0.87847 0.91352 0.86313 0.82642 0.82555 0.82854 0.85480 0.92759 0.89752 0.88725 0.88082 0.93862 0.88980 0.76471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -9.28 19.25 74.32 1.43 -7.85 16 2 C -0.16 -7.17 10.96 31.12 0.34 -6.83 16 3 C 0.22 9.55 4.18 84.57 0.35 9.90 16 4 N -0.44 -23.06 2.11 -645.41 -1.36 -24.42 16 5 C -0.36 -20.86 9.43 84.04 0.79 -20.06 16 6 H 0.07 4.59 7.31 -2.91 -0.02 4.57 16 7 C 0.01 0.69 4.85 84.93 0.41 1.11 16 8 N -0.86 -43.68 9.31 21.66 0.20 -43.48 16 9 Si 0.98 41.91 29.63 68.60 2.03 43.94 16 10 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 11 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 12 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 13 C 0.44 23.68 5.30 87.66 0.46 24.14 16 14 O -0.61 -38.87 16.31 12.92 0.21 -38.66 16 15 C 0.09 3.92 1.47 29.85 0.04 3.97 16 16 H 0.11 4.11 3.04 -2.39 -0.01 4.11 16 17 O -0.31 -13.78 9.24 -67.88 -0.63 -14.41 16 18 C 0.10 3.65 5.33 22.51 0.12 3.77 16 19 C -0.18 -5.53 9.99 22.37 0.22 -5.31 16 20 C -0.08 -1.72 10.04 22.25 0.22 -1.49 16 21 C -0.16 -3.07 10.04 22.28 0.22 -2.85 16 22 C -0.08 -1.64 10.04 22.25 0.22 -1.41 16 23 C -0.22 -6.32 7.24 22.36 0.16 -6.15 16 24 C 0.12 3.84 0.87 -10.80 -0.01 3.83 16 25 C -0.17 -4.04 7.38 71.98 0.53 -3.51 16 26 C -0.19 -5.49 7.38 71.98 0.53 -4.95 16 27 O -0.56 -20.78 12.44 -135.51 -1.69 -22.47 16 28 H 0.23 7.11 7.80 -4.41 -0.03 7.08 16 29 H 0.10 3.49 3.43 -2.39 -0.01 3.48 16 30 H 0.10 4.71 6.23 -2.39 -0.01 4.70 16 31 H 0.28 13.12 8.31 -92.71 -0.77 12.35 16 32 H 0.12 3.75 8.06 -2.91 -0.02 3.72 16 33 H 0.16 2.43 8.06 -2.91 -0.02 2.40 16 34 H 0.16 1.89 8.06 -2.91 -0.02 1.87 16 35 H 0.15 2.30 8.06 -2.91 -0.02 2.28 16 36 H 0.13 3.57 4.64 -2.91 -0.01 3.56 16 37 H 0.05 1.48 6.30 -2.38 -0.02 1.46 16 38 H 0.08 1.69 6.95 -2.39 -0.02 1.67 16 39 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 41 H 0.04 1.63 6.07 -2.39 -0.01 1.61 16 42 H 0.09 2.19 6.38 -2.39 -0.02 2.17 16 43 H 0.39 9.62 9.05 -74.06 -0.67 8.95 16 Total: -1.00 -80.95 348.14 5.22 -75.73 By element: Atomic # 1 Polarization: 37.09 SS G_CDS: 0.39 Total: 37.48 kcal Atomic # 6 Polarization: -19.78 SS G_CDS: 6.07 Total: -13.71 kcal Atomic # 7 Polarization: -66.74 SS G_CDS: -1.16 Total: -67.90 kcal Atomic # 8 Polarization: -73.44 SS G_CDS: -2.10 Total: -75.54 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.94 kcal Total: -80.95 5.22 -75.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847179487.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.937 kcal (2) G-P(sol) polarization free energy of solvation -80.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds