Wall clock time and date at job start Tue Mar 31 2020 11:33:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47133 * 2 1 4 4 C 1.47201 * 109.47417 * 179.97438 * 3 2 1 5 5 N 3.43548 * 155.17275 * 0.02562 * 2 1 3 6 6 C 1.53006 * 109.47198 * 299.99964 * 3 2 1 7 7 C 1.53000 * 109.46992 * 300.00219 * 6 3 2 8 8 C 1.50699 * 109.47144 * 59.99732 * 3 2 1 9 9 O 1.20821 * 120.00185 * 239.99811 * 8 3 2 10 10 O 1.34231 * 120.00087 * 60.00292 * 8 3 2 11 11 C 1.45196 * 117.00047 * 179.97438 * 10 8 3 12 12 C 1.50706 * 109.47037 * 179.97438 * 11 10 8 13 13 C 1.38294 * 119.93130 * 269.73094 * 12 11 10 14 14 C 1.38099 * 120.07055 * 179.72623 * 13 12 11 15 15 C 1.38885 * 119.92916 * 0.56465 * 14 13 12 16 16 O 1.35746 * 120.07221 * 179.68553 * 15 14 13 17 17 C 1.34828 * 117.00240 * 174.48968 * 16 15 14 18 18 H 1.08006 * 120.00054 * 5.05118 * 17 16 15 19 19 C 1.38655 * 120.00332 * 185.05591 * 17 16 15 20 20 N 1.31553 * 119.99844 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00136 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47289 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47041 * 119.99838 * 21 19 17 24 24 H 1.48501 * 109.47247 * 240.00056 * 21 19 17 25 25 C 1.38888 * 119.85809 * 359.70827 * 15 14 13 26 26 C 1.38097 * 119.93011 * 359.97438 * 25 15 14 27 27 H 1.08999 * 109.47259 * 299.99729 * 1 2 3 28 28 H 1.08996 * 109.46947 * 60.00380 * 1 2 3 29 29 H 1.08996 * 109.47132 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47525 * 239.99791 * 2 1 3 31 31 H 1.09005 * 109.47028 * 119.99762 * 2 1 3 32 32 H 1.09001 * 109.47150 * 59.99812 * 6 3 2 33 33 H 1.08996 * 109.47345 * 180.02562 * 6 3 2 34 34 H 1.09000 * 109.47078 * 59.99285 * 7 6 3 35 35 H 1.08996 * 109.47399 * 179.97438 * 7 6 3 36 36 H 1.09001 * 109.46840 * 299.99782 * 7 6 3 37 37 H 1.08996 * 109.47566 * 299.99750 * 11 10 8 38 38 H 1.09002 * 109.47418 * 60.00155 * 11 10 8 39 39 H 1.08001 * 119.96614 * 359.97036 * 13 12 11 40 40 H 1.08000 * 120.04137 * 180.26759 * 14 13 12 41 41 H 0.97003 * 120.00423 * 179.97438 * 20 19 17 42 42 H 1.08002 * 120.03290 * 179.97438 * 25 15 14 43 43 H 1.07997 * 119.96090 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5120 1.4425 0.0006 5 7 4.6480 1.4425 0.0006 6 6 1.5300 2.1638 -1.2493 7 6 2.0400 1.4425 -2.4985 8 6 1.5376 2.1529 1.2304 9 8 0.8430 3.1353 1.1195 10 8 1.8619 1.6944 2.4496 11 6 1.3432 2.4289 3.5896 12 6 1.8071 1.7717 4.8640 13 6 1.0377 0.7834 5.4504 14 6 1.4628 0.1752 6.6151 15 6 2.6586 0.5653 7.2039 16 8 3.0761 -0.0261 8.3522 17 6 4.2974 0.3172 8.8087 18 1 4.8616 1.0924 8.3113 19 6 4.8293 -0.3249 9.9165 20 7 4.1421 -1.2688 10.5226 21 14 6.5218 0.1503 10.5484 22 1 7.0828 1.2301 9.6972 23 1 6.4102 0.6309 11.9490 24 1 7.4180 -1.0328 10.5009 25 6 3.4262 1.5621 6.6155 26 6 2.9988 2.1617 5.4473 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 0.4400 2.1637 -1.2493 33 1 1.8937 3.1912 -1.2495 34 1 1.6767 0.4148 -2.4984 35 1 1.6763 1.9560 -3.3885 36 1 3.1300 1.4425 -2.4985 37 1 1.7073 3.4557 3.5565 38 1 0.2536 2.4286 3.5568 39 1 0.1053 0.4841 4.9948 40 1 0.8636 -0.5995 7.0703 41 1 4.5142 -1.7183 11.2974 42 1 4.3564 1.8679 7.0712 43 1 3.5955 2.9366 4.9891 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000860198276.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:39 Heat of formation + Delta-G solvation = -70.739513 kcal Electronic energy + Delta-G solvation = -25616.920550 eV Core-core repulsion = 21821.100239 eV Total energy + Delta-G solvation = -3795.820310 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.17861 -39.19111 -38.26834 -37.00207 -36.19492 -35.60174 -32.47517 -31.76592 -30.69155 -30.27988 -28.89732 -26.12060 -24.95114 -24.20511 -22.56879 -22.09615 -21.16021 -20.64788 -18.65463 -18.11349 -17.37409 -17.14360 -16.77223 -16.17571 -15.28984 -15.12592 -14.72050 -14.50943 -14.46530 -13.82172 -13.74893 -13.70318 -13.48850 -13.37479 -12.99710 -12.94046 -12.82660 -12.76723 -12.47629 -12.32719 -12.24875 -11.95676 -11.76113 -11.71688 -11.44324 -11.20333 -11.10752 -11.05403 -10.85495 -10.76029 -10.55763 -10.49160 -10.46307 -9.43766 -8.93650 -8.30219 -7.36905 -6.54998 -4.13415 1.72011 1.84925 2.12460 2.34517 2.39422 2.88624 3.08407 3.09961 3.15128 3.37609 3.89381 4.10457 4.17487 4.33279 4.62725 4.72538 4.86507 4.89476 4.98690 5.01148 5.09353 5.12499 5.19311 5.20159 5.24376 5.46079 5.50137 5.59448 5.61099 5.65590 5.66339 5.72555 5.73747 5.96749 6.09812 6.29737 6.31220 6.56008 6.77228 6.93935 7.11297 7.14374 7.23622 7.32910 7.52135 7.68518 7.89970 8.90457 9.57733 10.62426 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021239 B = 0.002564 C = 0.002460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.006332 B =10918.582522 C =11380.309584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.116 4.116 3 C 0.052 3.948 4 C 0.212 3.788 5 N -0.399 5.399 6 C -0.105 4.105 7 C -0.159 4.159 8 C 0.474 3.526 9 O -0.494 6.494 10 O -0.342 6.342 11 C 0.129 3.871 12 C -0.207 4.207 13 C -0.047 4.047 14 C -0.196 4.196 15 C 0.164 3.836 16 O -0.171 6.171 17 C -0.393 4.393 18 H 0.095 0.905 19 C 0.041 3.959 20 N -0.858 5.858 21 Si 0.942 3.058 22 H -0.266 1.266 23 H -0.275 1.275 24 H -0.275 1.275 25 C -0.238 4.238 26 C -0.044 4.044 27 H 0.058 0.942 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.098 0.902 33 H 0.081 0.919 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.055 0.945 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.114 0.886 40 H 0.120 0.880 41 H 0.271 0.729 42 H 0.130 0.870 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.674 4.056 -21.628 23.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.154 4.154 3 C 0.048 3.952 4 C -0.107 4.107 5 N -0.073 5.073 6 C -0.144 4.144 7 C -0.216 4.216 8 C 0.314 3.686 9 O -0.381 6.381 10 O -0.258 6.258 11 C 0.057 3.943 12 C -0.208 4.208 13 C -0.065 4.065 14 C -0.215 4.215 15 C 0.109 3.891 16 O -0.073 6.073 17 C -0.469 4.469 18 H 0.112 0.888 19 C -0.164 4.164 20 N -0.492 5.492 21 Si 0.767 3.233 22 H -0.190 1.190 23 H -0.200 1.200 24 H -0.200 1.200 25 C -0.257 4.257 26 C -0.062 4.062 27 H 0.077 0.923 28 H 0.085 0.915 29 H 0.090 0.910 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.116 0.884 33 H 0.100 0.900 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.074 0.926 37 H 0.090 0.910 38 H 0.093 0.907 39 H 0.132 0.868 40 H 0.138 0.862 41 H 0.081 0.919 42 H 0.147 0.853 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -6.223 4.037 -21.219 22.478 hybrid contribution 0.495 0.399 0.503 0.811 sum -5.728 4.436 -20.715 21.946 Atomic orbital electron populations 1.21887 0.93664 1.03215 1.02712 1.21730 0.97646 0.90786 1.05286 1.18291 0.83333 0.99944 0.93672 1.28169 0.93884 0.94431 0.94180 1.81250 1.11982 1.07036 1.07050 1.21598 1.02968 0.99621 0.90176 1.21919 1.01480 1.01227 0.96988 1.22786 0.78178 0.82500 0.85108 1.90681 1.35353 1.24786 1.87321 1.86683 1.69072 1.55800 1.14294 1.21809 0.98203 0.94056 0.80243 1.18824 0.99500 1.05355 0.97140 1.20491 0.97990 0.93777 0.94273 1.20197 0.97697 1.05101 0.98525 1.19450 0.92741 0.90741 0.86190 1.83974 1.33668 1.58339 1.31327 1.21428 0.91534 1.21109 1.12831 0.88808 1.25329 0.99854 0.95462 0.95801 1.70042 1.37399 1.22076 1.19689 0.85622 0.80007 0.78737 0.78950 1.19002 1.20020 1.20014 1.21147 1.03295 1.01912 0.99332 1.20623 0.93907 0.97350 0.94335 0.92297 0.91501 0.91040 0.89086 0.89134 0.88376 0.90033 0.91441 0.91261 0.92617 0.91045 0.90745 0.86799 0.86154 0.91875 0.85265 0.87420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.97 9.31 37.16 0.35 -0.62 16 2 C -0.12 -0.84 4.53 -26.73 -0.12 -0.96 16 3 C 0.05 0.48 0.46 -158.45 -0.07 0.41 16 4 C 0.21 2.49 12.50 -20.76 -0.26 2.23 16 5 N -0.40 -5.65 18.54 42.15 0.78 -4.87 16 6 C -0.11 -0.74 3.90 -26.73 -0.10 -0.84 16 7 C -0.16 -0.85 9.31 37.16 0.35 -0.51 16 8 C 0.47 5.70 5.26 36.00 0.19 5.89 16 9 O -0.49 -6.57 15.73 -18.75 -0.29 -6.86 16 10 O -0.34 -4.77 10.01 -39.26 -0.39 -5.17 16 11 C 0.13 1.81 5.59 36.01 0.20 2.01 16 12 C -0.21 -3.49 5.52 -104.58 -0.58 -4.07 16 13 C -0.05 -0.80 9.69 -39.61 -0.38 -1.19 16 14 C -0.20 -3.98 9.99 -39.39 -0.39 -4.38 16 15 C 0.16 3.86 6.65 -39.10 -0.26 3.60 16 16 O -0.17 -4.76 9.76 0.06 0.00 -4.76 16 17 C -0.39 -10.78 9.49 30.89 0.29 -10.49 16 18 H 0.09 2.39 5.20 -52.48 -0.27 2.12 16 19 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 20 N -0.86 -24.68 13.67 55.48 0.76 -23.92 16 21 Si 0.94 20.23 29.55 -169.99 -5.02 15.21 16 22 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 23 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 24 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 25 C -0.24 -5.09 9.17 -39.39 -0.36 -5.45 16 26 C -0.04 -0.80 9.69 -39.61 -0.38 -1.19 16 27 H 0.06 0.45 7.22 -51.93 -0.37 0.07 16 28 H 0.07 0.32 6.43 -51.93 -0.33 -0.02 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.09 0.48 6.43 -51.93 -0.33 0.15 16 31 H 0.09 0.76 8.11 -51.93 -0.42 0.34 16 32 H 0.10 0.59 6.39 -51.93 -0.33 0.25 16 33 H 0.08 0.63 8.10 -51.93 -0.42 0.20 16 34 H 0.07 0.28 6.43 -51.93 -0.33 -0.05 16 35 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.05 0.37 7.23 -51.93 -0.38 -0.01 16 37 H 0.07 0.96 8.08 -51.93 -0.42 0.54 16 38 H 0.07 0.93 8.07 -51.93 -0.42 0.51 16 39 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 40 H 0.12 2.33 8.06 -52.49 -0.42 1.91 16 41 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 42 H 0.13 2.78 5.64 -52.49 -0.30 2.48 16 43 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 367.23 15.07 5.53 5.53 Total: -1.00 -31.80 367.23 -5.86 -37.66 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -5.58 Total: 1.72 kcal Atomic # 6 Polarization: -12.90 SS G_CDS: -1.64 Total: -14.53 kcal Atomic # 7 Polarization: -30.33 SS G_CDS: 1.54 Total: -28.79 kcal Atomic # 8 Polarization: -16.10 SS G_CDS: -0.69 Total: -16.79 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.80 -5.86 -37.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860198276.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.083 kcal (2) G-P(sol) polarization free energy of solvation -31.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds