Wall clock time and date at job start Tue Mar 31 2020 11:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47133 * 2 1 4 4 C 1.47201 * 109.47417 * 179.97438 * 3 2 1 5 5 N 3.43548 * 155.17275 * 0.02562 * 2 1 3 6 6 C 1.53006 * 109.47198 * 299.99964 * 3 2 1 7 7 C 1.53000 * 109.46992 * 300.00219 * 6 3 2 8 8 C 1.50699 * 109.47144 * 59.99732 * 3 2 1 9 9 O 1.20821 * 120.00185 * 239.99811 * 8 3 2 10 10 O 1.34231 * 120.00087 * 60.00292 * 8 3 2 11 11 C 1.45196 * 117.00047 * 179.97438 * 10 8 3 12 12 C 1.50706 * 109.47037 * 179.97438 * 11 10 8 13 13 C 1.38294 * 119.93130 * 269.73094 * 12 11 10 14 14 C 1.38099 * 120.07055 * 179.72623 * 13 12 11 15 15 C 1.38885 * 119.92916 * 0.56465 * 14 13 12 16 16 O 1.35746 * 120.07221 * 179.68553 * 15 14 13 17 17 C 1.34828 * 117.00240 * 174.48968 * 16 15 14 18 18 H 1.08006 * 120.00054 * 5.05118 * 17 16 15 19 19 C 1.38655 * 120.00332 * 185.05591 * 17 16 15 20 20 N 1.31553 * 119.99844 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00136 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47289 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47041 * 119.99838 * 21 19 17 24 24 H 1.48501 * 109.47247 * 240.00056 * 21 19 17 25 25 C 1.38888 * 119.85809 * 359.70827 * 15 14 13 26 26 C 1.38097 * 119.93011 * 359.97438 * 25 15 14 27 27 H 1.08999 * 109.47259 * 299.99729 * 1 2 3 28 28 H 1.08996 * 109.46947 * 60.00380 * 1 2 3 29 29 H 1.08996 * 109.47132 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47525 * 239.99791 * 2 1 3 31 31 H 1.09005 * 109.47028 * 119.99762 * 2 1 3 32 32 H 1.09001 * 109.47150 * 59.99812 * 6 3 2 33 33 H 1.08996 * 109.47345 * 180.02562 * 6 3 2 34 34 H 1.09000 * 109.47078 * 59.99285 * 7 6 3 35 35 H 1.08996 * 109.47399 * 179.97438 * 7 6 3 36 36 H 1.09001 * 109.46840 * 299.99782 * 7 6 3 37 37 H 1.08996 * 109.47566 * 299.99750 * 11 10 8 38 38 H 1.09002 * 109.47418 * 60.00155 * 11 10 8 39 39 H 1.08001 * 119.96614 * 359.97036 * 13 12 11 40 40 H 1.08000 * 120.04137 * 180.26759 * 14 13 12 41 41 H 0.97003 * 120.00423 * 179.97438 * 20 19 17 42 42 H 1.08002 * 120.03290 * 179.97438 * 25 15 14 43 43 H 1.07997 * 119.96090 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5120 1.4425 0.0006 5 7 4.6480 1.4425 0.0006 6 6 1.5300 2.1638 -1.2493 7 6 2.0400 1.4425 -2.4985 8 6 1.5376 2.1529 1.2304 9 8 0.8430 3.1353 1.1195 10 8 1.8619 1.6944 2.4496 11 6 1.3432 2.4289 3.5896 12 6 1.8071 1.7717 4.8640 13 6 1.0377 0.7834 5.4504 14 6 1.4628 0.1752 6.6151 15 6 2.6586 0.5653 7.2039 16 8 3.0761 -0.0261 8.3522 17 6 4.2974 0.3172 8.8087 18 1 4.8616 1.0924 8.3113 19 6 4.8293 -0.3249 9.9165 20 7 4.1421 -1.2688 10.5226 21 14 6.5218 0.1503 10.5484 22 1 7.0828 1.2301 9.6972 23 1 6.4102 0.6309 11.9490 24 1 7.4180 -1.0328 10.5009 25 6 3.4262 1.5621 6.6155 26 6 2.9988 2.1617 5.4473 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 0.4400 2.1637 -1.2493 33 1 1.8937 3.1912 -1.2495 34 1 1.6767 0.4148 -2.4984 35 1 1.6763 1.9560 -3.3885 36 1 3.1300 1.4425 -2.4985 37 1 1.7073 3.4557 3.5565 38 1 0.2536 2.4286 3.5568 39 1 0.1053 0.4841 4.9948 40 1 0.8636 -0.5995 7.0703 41 1 4.5142 -1.7183 11.2974 42 1 4.3564 1.8679 7.0712 43 1 3.5955 2.9366 4.9891 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000860198276.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:38 Heat of formation + Delta-G solvation = -88.057104 kcal Electronic energy + Delta-G solvation = -25617.671497 eV Core-core repulsion = 21821.100239 eV Total energy + Delta-G solvation = -3796.571257 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.13236 -40.84646 -39.26167 -38.41167 -37.45916 -36.47733 -34.39658 -32.39130 -32.04257 -31.84968 -29.64398 -27.80208 -26.53249 -24.74108 -23.71689 -23.46573 -22.20598 -21.89347 -19.92972 -19.57111 -18.96449 -18.26162 -17.74342 -17.14495 -16.47159 -16.38921 -16.09261 -15.89239 -15.59131 -15.47769 -15.10127 -14.84114 -14.55505 -14.42521 -14.24699 -13.91876 -13.80547 -13.75914 -13.65779 -13.51312 -13.11108 -12.95625 -12.84600 -12.65971 -12.57140 -12.44609 -12.31269 -12.22008 -12.12769 -11.79364 -11.69621 -11.65057 -11.36515 -11.23171 -10.84963 -9.86300 -9.08526 -8.51907 -6.20074 0.37783 0.53435 0.81668 1.28817 1.33530 1.41674 1.48881 1.51292 1.87354 2.14235 2.53914 2.77908 3.09649 3.39967 3.44199 3.52718 3.63793 3.84903 3.89739 4.11246 4.24164 4.27593 4.34759 4.36273 4.41321 4.48385 4.52432 4.72243 4.74256 4.77769 4.97073 5.03523 5.09426 5.11302 5.15697 5.17329 5.19677 5.29848 5.33329 5.48382 5.52929 5.63789 5.66033 5.97754 6.09958 6.22666 6.52496 6.92872 7.70563 8.70917 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021239 B = 0.002564 C = 0.002460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.006332 B =10918.582522 C =11380.309584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.116 4.116 3 C 0.056 3.944 4 C 0.232 3.768 5 N -0.447 5.447 6 C -0.103 4.103 7 C -0.157 4.157 8 C 0.476 3.524 9 O -0.504 6.504 10 O -0.355 6.355 11 C 0.128 3.872 12 C -0.183 4.183 13 C -0.036 4.036 14 C -0.204 4.204 15 C 0.126 3.874 16 O -0.225 6.225 17 C -0.415 4.415 18 H 0.101 0.899 19 C -0.019 4.019 20 N -0.916 5.916 21 Si 1.017 2.983 22 H -0.254 1.254 23 H -0.266 1.266 24 H -0.268 1.268 25 C -0.248 4.248 26 C -0.048 4.048 27 H 0.043 0.957 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.113 0.887 31 H 0.077 0.923 32 H 0.114 0.886 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.039 0.961 37 H 0.081 0.919 38 H 0.099 0.901 39 H 0.158 0.842 40 H 0.122 0.878 41 H 0.274 0.726 42 H 0.120 0.880 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.870 5.134 -24.905 26.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.154 4.154 3 C 0.052 3.948 4 C -0.087 4.087 5 N -0.122 5.122 6 C -0.141 4.141 7 C -0.214 4.214 8 C 0.317 3.683 9 O -0.391 6.391 10 O -0.272 6.272 11 C 0.056 3.944 12 C -0.183 4.183 13 C -0.054 4.054 14 C -0.223 4.223 15 C 0.075 3.925 16 O -0.131 6.131 17 C -0.491 4.491 18 H 0.119 0.881 19 C -0.218 4.218 20 N -0.554 5.554 21 Si 0.837 3.163 22 H -0.177 1.177 23 H -0.191 1.191 24 H -0.193 1.193 25 C -0.267 4.267 26 C -0.066 4.066 27 H 0.062 0.938 28 H 0.103 0.897 29 H 0.102 0.898 30 H 0.131 0.869 31 H 0.095 0.905 32 H 0.133 0.867 33 H 0.091 0.909 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.058 0.942 37 H 0.099 0.901 38 H 0.117 0.883 39 H 0.175 0.825 40 H 0.140 0.860 41 H 0.083 0.917 42 H 0.137 0.863 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -7.445 5.147 -24.556 26.171 hybrid contribution 0.626 0.204 1.144 1.319 sum -6.819 5.351 -23.413 24.966 Atomic orbital electron populations 1.21911 0.92437 1.04142 1.02839 1.21825 0.98609 0.89149 1.05819 1.18603 0.81597 1.01412 0.93230 1.28636 0.94347 0.92940 0.92741 1.81270 1.13530 1.08747 1.08610 1.21688 1.03869 0.99041 0.89533 1.21932 1.00469 1.02272 0.96691 1.23205 0.77815 0.82326 0.84927 1.90683 1.35914 1.25176 1.87317 1.86642 1.69485 1.56051 1.14983 1.21789 0.99625 0.93951 0.79015 1.19251 0.97925 1.03416 0.97745 1.20938 0.99269 0.92605 0.92576 1.20492 0.96773 1.05540 0.99510 1.20020 0.94393 0.91848 0.86277 1.83944 1.34417 1.60809 1.33894 1.21856 0.92085 1.21690 1.13487 0.88147 1.26564 1.04155 0.95283 0.95762 1.70172 1.39844 1.24343 1.21000 0.84547 0.74492 0.78780 0.78516 1.17709 1.19106 1.19305 1.21222 1.03029 1.01991 1.00455 1.20942 0.94835 0.97585 0.93202 0.93768 0.89734 0.89801 0.86854 0.90453 0.86736 0.90880 0.89779 0.89714 0.94172 0.90060 0.88299 0.82489 0.85962 0.91667 0.86254 0.84839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.33 9.31 71.98 0.67 -0.66 16 2 C -0.12 -1.31 4.53 30.59 0.14 -1.17 16 3 C 0.06 0.89 0.46 -54.73 -0.03 0.86 16 4 C 0.23 5.06 12.50 89.44 1.12 6.17 16 5 N -0.45 -12.31 18.54 20.01 0.37 -11.94 16 6 C -0.10 -1.11 3.90 30.60 0.12 -1.00 16 7 C -0.16 -1.18 9.31 71.98 0.67 -0.51 16 8 C 0.48 10.03 5.26 71.24 0.37 10.40 16 9 O -0.50 -11.73 15.73 21.98 0.35 -11.38 16 10 O -0.36 -8.78 10.01 -51.43 -0.51 -9.30 16 11 C 0.13 3.11 5.59 71.24 0.40 3.50 16 12 C -0.18 -5.63 5.52 -19.83 -0.11 -5.74 16 13 C -0.04 -1.14 9.69 22.25 0.22 -0.92 16 14 C -0.20 -8.30 9.99 22.39 0.22 -8.08 16 15 C 0.13 6.16 6.65 22.58 0.15 6.31 16 16 O -0.22 -13.34 9.76 -22.68 -0.22 -13.57 16 17 C -0.42 -24.05 9.49 67.92 0.64 -23.41 16 18 H 0.10 5.39 5.20 -2.91 -0.02 5.37 16 19 C -0.02 -1.10 5.49 84.83 0.47 -0.63 16 20 N -0.92 -55.63 13.67 21.61 0.30 -55.34 16 21 Si 1.02 42.81 29.55 68.60 2.03 44.84 16 22 H -0.25 -9.96 7.11 99.48 0.71 -9.26 16 23 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 24 H -0.27 -10.84 7.11 99.48 0.71 -10.14 16 25 C -0.25 -10.80 9.17 22.39 0.21 -10.60 16 26 C -0.05 -1.67 9.69 22.25 0.22 -1.45 16 27 H 0.04 0.52 7.22 -2.39 -0.02 0.50 16 28 H 0.08 0.43 6.43 -2.39 -0.02 0.41 16 29 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.11 0.79 6.43 -2.39 -0.02 0.78 16 31 H 0.08 1.11 8.11 -2.38 -0.02 1.09 16 32 H 0.11 0.90 6.39 -2.39 -0.02 0.89 16 33 H 0.07 0.94 8.10 -2.39 -0.02 0.92 16 34 H 0.08 0.36 6.43 -2.39 -0.02 0.34 16 35 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 36 H 0.04 0.44 7.23 -2.39 -0.02 0.43 16 37 H 0.08 1.87 8.08 -2.39 -0.02 1.85 16 38 H 0.10 1.98 8.07 -2.39 -0.02 1.96 16 39 H 0.16 3.63 8.06 -2.91 -0.02 3.61 16 40 H 0.12 4.83 8.06 -2.91 -0.02 4.81 16 41 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 42 H 0.12 5.34 5.64 -2.91 -0.02 5.32 16 43 H 0.13 3.97 8.06 -2.91 -0.02 3.95 16 Total: -1.00 -74.24 367.23 8.81 -65.43 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: 1.04 Total: 18.16 kcal Atomic # 6 Polarization: -32.37 SS G_CDS: 5.47 Total: -26.90 kcal Atomic # 7 Polarization: -67.95 SS G_CDS: 0.67 Total: -67.28 kcal Atomic # 8 Polarization: -33.85 SS G_CDS: -0.39 Total: -34.24 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Total: -74.24 8.81 -65.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860198276.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.631 kcal (2) G-P(sol) polarization free energy of solvation -74.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds