Wall clock time and date at job start Tue Mar 31 2020 12:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47033 * 2 1 4 4 C 1.50698 * 109.46907 * 240.00068 * 2 1 3 5 5 H 1.08009 * 119.99873 * 239.99967 * 4 2 1 6 6 C 1.37879 * 120.00054 * 60.00013 * 4 2 1 7 7 N 1.31504 * 120.00303 * 359.97438 * 6 4 2 8 8 Si 1.86809 * 119.99645 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47069 * 60.00160 * 8 6 4 10 10 H 1.48500 * 109.46785 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47146 * 299.99864 * 8 6 4 12 12 C 1.52997 * 109.47312 * 120.00120 * 2 1 3 13 13 N 1.46904 * 109.46950 * 300.00123 * 12 2 1 14 14 C 1.46899 * 111.00029 * 180.02562 * 13 12 2 15 15 C 1.50703 * 109.47107 * 179.97438 * 14 13 12 16 16 C 1.38255 * 119.95539 * 259.72195 * 15 14 13 17 17 C 1.38130 * 120.07924 * 179.76449 * 16 15 14 18 18 C 1.38773 * 119.99517 * 0.53577 * 17 16 15 19 19 O 1.35893 * 120.04607 * 179.69812 * 18 17 16 20 20 C 1.42897 * 116.99752 * 0.02562 * 19 18 17 21 21 F 1.39896 * 109.47359 * 299.99821 * 20 19 18 22 22 F 1.39901 * 109.47201 * 59.99948 * 20 19 18 23 23 C 1.38672 * 119.91074 * 359.71987 * 18 17 16 24 24 C 1.38385 * 119.92451 * 359.97438 * 23 18 17 25 25 F 1.35097 * 119.99868 * 179.97438 * 24 23 18 26 26 H 1.09002 * 109.47029 * 300.00286 * 1 2 3 27 27 H 1.09000 * 109.47152 * 60.00059 * 1 2 3 28 28 H 1.08993 * 109.47356 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46874 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.47103 * 299.99971 * 3 2 1 31 31 H 1.09002 * 109.47446 * 59.99970 * 3 2 1 32 32 H 0.96998 * 120.00316 * 180.02562 * 7 6 4 33 33 H 1.08995 * 109.47319 * 180.02562 * 12 2 1 34 34 H 1.09003 * 109.47435 * 59.99376 * 12 2 1 35 35 H 1.00902 * 111.00190 * 56.03777 * 13 12 2 36 36 H 1.09002 * 109.47043 * 299.99792 * 14 13 12 37 37 H 1.09001 * 109.47354 * 59.99854 * 14 13 12 38 38 H 1.08000 * 119.95947 * 0.02562 * 16 15 14 39 39 H 1.07998 * 120.00996 * 180.25074 * 17 16 15 40 40 H 1.09003 * 109.47114 * 179.97438 * 20 19 18 41 41 H 1.08005 * 120.03668 * 180.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3213 -1.1204 -4.0080 9 1 1.8256 -2.5202 -4.0077 10 1 1.8269 -0.4200 -5.2205 11 1 3.8063 -1.1211 -4.0082 12 6 2.0400 -0.7213 1.2492 13 7 1.5503 -0.0288 2.4487 14 6 2.0219 -0.6945 3.6703 15 6 1.5012 0.0428 4.8771 16 6 2.3239 0.9214 5.5573 17 6 1.8479 1.6022 6.6609 18 6 0.5458 1.3963 7.0946 19 8 0.0784 2.0609 8.1838 20 6 0.9817 2.9570 8.8341 21 9 2.1027 2.2480 9.2789 22 9 1.3845 3.9485 7.9329 23 6 -0.2775 0.5110 6.4153 24 6 0.2011 -0.1644 5.3063 25 9 -0.5995 -1.0276 4.6437 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 3.1300 1.4424 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 0.7081 1.1608 -3.4844 33 1 3.1300 -0.7209 1.2494 34 1 1.6767 -1.7489 1.2493 35 1 0.5438 0.0414 2.4401 36 1 1.6588 -1.7221 3.6873 37 1 3.1118 -0.6939 3.6869 38 1 3.3387 1.0787 5.2230 39 1 2.4902 2.2912 7.1890 40 1 0.4835 3.4210 9.6853 41 1 -1.2913 0.3495 6.7508 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000865599680.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:52 Heat of formation + Delta-G solvation = -168.316121 kcal Electronic energy + Delta-G solvation = -26545.625535 eV Core-core repulsion = 22203.717245 eV Total energy + Delta-G solvation = -4341.908290 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.74196 -48.99228 -47.72816 -40.22063 -38.00462 -36.70151 -34.06619 -31.59335 -30.89063 -29.80658 -26.91856 -25.53295 -25.26782 -25.04062 -23.26295 -23.07332 -21.52815 -19.50556 -18.63153 -18.44757 -18.30411 -17.05641 -16.58465 -16.04096 -15.82005 -15.59463 -15.18319 -14.90958 -14.84677 -14.47245 -14.27507 -14.06960 -14.02921 -13.93410 -13.84786 -13.25638 -12.94203 -12.63731 -12.47241 -12.16248 -11.87516 -11.67377 -11.60768 -11.20866 -11.07231 -10.94565 -10.62994 -10.57161 -10.14810 -10.04082 -9.35864 -9.12257 -9.07075 -8.64587 -8.52603 -8.26406 -7.71670 -5.88700 -3.99302 0.92346 1.01029 2.09881 3.05062 3.31051 3.34402 3.39142 3.41746 3.87307 4.18546 4.22205 4.45555 4.50000 4.64565 4.68782 4.88765 5.08529 5.10979 5.36592 5.55575 5.72503 5.82243 5.84426 5.95453 6.23612 6.29620 6.33961 6.42646 6.74155 6.75615 6.92014 7.10431 7.20043 7.40653 7.48369 7.71368 7.78555 7.84730 7.94156 8.23572 8.36868 8.58002 9.01902 9.65523 11.11837 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.027360 B = 0.002599 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.161511 B =10771.515051 C =11064.441535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.070 3.930 3 C -0.119 4.119 4 C -0.508 4.508 5 H 0.051 0.949 6 C 0.066 3.934 7 N -0.885 5.885 8 Si 0.889 3.111 9 H -0.279 1.279 10 H -0.288 1.288 11 H -0.278 1.278 12 C 0.075 3.925 13 N -0.680 5.680 14 C 0.097 3.903 15 C -0.124 4.124 16 C -0.036 4.036 17 C -0.200 4.200 18 C 0.125 3.875 19 O -0.319 6.319 20 C 0.413 3.587 21 F -0.198 7.198 22 F -0.196 7.196 23 C -0.172 4.172 24 C 0.138 3.862 25 F -0.128 7.128 26 H 0.010 0.990 27 H 0.083 0.917 28 H 0.019 0.981 29 H 0.018 0.982 30 H 0.074 0.926 31 H 0.020 0.980 32 H 0.258 0.742 33 H 0.058 0.942 34 H 0.015 0.985 35 H 0.339 0.661 36 H 0.036 0.964 37 H 0.082 0.918 38 H 0.142 0.858 39 H 0.138 0.862 40 H 0.183 0.817 41 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.718 3.299 24.441 24.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.069 3.931 3 C -0.177 4.177 4 C -0.546 4.546 5 H 0.070 0.930 6 C -0.135 4.135 7 N -0.523 5.523 8 Si 0.717 3.283 9 H -0.205 1.205 10 H -0.214 1.214 11 H -0.204 1.204 12 C -0.053 4.053 13 N -0.312 5.312 14 C -0.033 4.033 15 C -0.125 4.125 16 C -0.054 4.054 17 C -0.219 4.219 18 C 0.082 3.918 19 O -0.237 6.237 20 C 0.323 3.677 21 F -0.180 7.180 22 F -0.178 7.178 23 C -0.191 4.191 24 C 0.118 3.882 25 F -0.107 7.107 26 H 0.029 0.971 27 H 0.102 0.898 28 H 0.038 0.962 29 H 0.037 0.963 30 H 0.093 0.907 31 H 0.039 0.961 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.033 0.967 35 H 0.158 0.842 36 H 0.055 0.945 37 H 0.100 0.900 38 H 0.159 0.841 39 H 0.156 0.844 40 H 0.199 0.801 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -0.462 3.831 24.318 24.622 hybrid contribution -0.093 -1.312 -0.971 1.635 sum -0.555 2.519 23.346 23.489 Atomic orbital electron populations 1.21837 0.98511 0.98426 1.00276 1.18081 0.92117 0.93055 0.89837 1.21640 0.97749 0.98188 1.00093 1.21073 1.31242 1.11832 0.90485 0.93033 1.24882 0.95049 0.94940 0.98670 1.69821 1.36741 1.22769 1.23015 0.86718 0.79164 0.79759 0.82646 1.20475 1.21369 1.20408 1.22194 0.98989 0.94527 0.89638 1.60722 1.16656 1.53288 1.00580 1.20804 1.00544 0.94333 0.87571 1.20029 0.92569 1.00821 0.99098 1.20745 0.99988 0.92338 0.92374 1.21555 0.94755 1.04632 1.00914 1.18366 0.92739 0.93470 0.87217 1.86595 1.40569 1.55227 1.41291 1.23369 0.78636 0.77784 0.87954 1.93104 1.55928 1.79631 1.89340 1.93125 1.91403 1.62303 1.70929 1.20144 1.01528 1.00265 0.97207 1.17131 0.88480 0.90919 0.91686 1.91536 1.72790 1.66960 1.79369 0.97106 0.89792 0.96171 0.96300 0.90746 0.96127 0.93129 0.92379 0.96690 0.84166 0.94550 0.89960 0.84071 0.84444 0.80090 0.83717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.22 7.92 37.16 0.29 -2.93 16 2 C 0.07 1.71 0.57 -155.66 -0.09 1.62 16 3 C -0.12 -2.94 8.09 37.16 0.30 -2.64 16 4 C -0.51 -13.80 8.01 -34.44 -0.28 -14.08 16 5 H 0.05 1.39 7.74 -52.48 -0.41 0.99 16 6 C 0.07 1.79 5.15 -17.82 -0.09 1.70 16 7 N -0.88 -24.77 9.35 55.43 0.52 -24.26 16 8 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 9 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 12 C 0.07 1.58 4.59 -3.82 -0.02 1.56 16 13 N -0.68 -12.51 5.70 -115.05 -0.66 -13.17 16 14 C 0.10 1.46 5.53 -4.98 -0.03 1.43 16 15 C -0.12 -1.69 5.40 -104.53 -0.56 -2.26 16 16 C -0.04 -0.43 9.66 -39.61 -0.38 -0.81 16 17 C -0.20 -2.27 8.26 -39.42 -0.33 -2.60 16 18 C 0.13 1.43 6.48 -39.22 -0.25 1.18 16 19 O -0.32 -2.97 10.43 -19.41 -0.20 -3.17 16 20 C 0.41 2.64 5.98 101.05 0.60 3.24 16 21 F -0.20 -1.57 15.58 2.25 0.04 -1.53 16 22 F -0.20 -1.68 15.58 2.25 0.04 -1.64 16 23 C -0.17 -2.06 9.97 -39.37 -0.39 -2.45 16 24 C 0.14 1.88 7.24 -39.44 -0.29 1.59 16 25 F -0.13 -1.89 16.66 2.25 0.04 -1.85 16 26 H 0.01 0.23 6.57 -51.93 -0.34 -0.12 16 27 H 0.08 2.24 6.07 -51.93 -0.32 1.93 16 28 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.07 2.01 6.07 -51.93 -0.32 1.70 16 31 H 0.02 0.47 7.60 -51.93 -0.39 0.07 16 32 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 33 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 34 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.34 6.44 6.76 -39.29 -0.27 6.17 16 36 H 0.04 0.55 7.94 -51.93 -0.41 0.14 16 37 H 0.08 1.15 8.00 -51.93 -0.42 0.73 16 38 H 0.14 1.48 8.03 -52.49 -0.42 1.06 16 39 H 0.14 1.40 5.09 -52.49 -0.27 1.14 16 40 H 0.18 0.22 8.14 -51.93 -0.42 -0.20 16 41 H 0.15 1.47 8.06 -52.48 -0.42 1.05 16 LS Contribution 343.96 15.07 5.18 5.18 Total: -1.00 -29.69 343.96 -6.80 -36.49 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -5.23 Total: 3.14 kcal Atomic # 6 Polarization: -13.93 SS G_CDS: -1.51 Total: -15.44 kcal Atomic # 7 Polarization: -37.29 SS G_CDS: -0.14 Total: -37.42 kcal Atomic # 8 Polarization: -2.97 SS G_CDS: -0.20 Total: -3.17 kcal Atomic # 9 Polarization: -5.13 SS G_CDS: 0.11 Total: -5.03 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -29.69 -6.80 -36.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865599680.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.828 kcal (2) G-P(sol) polarization free energy of solvation -29.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds