Wall clock time and date at job start Tue Mar 31 2020 12:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47033 * 2 1 4 4 C 1.50698 * 109.46907 * 240.00068 * 2 1 3 5 5 H 1.08009 * 119.99873 * 239.99967 * 4 2 1 6 6 C 1.37879 * 120.00054 * 60.00013 * 4 2 1 7 7 N 1.31504 * 120.00303 * 359.97438 * 6 4 2 8 8 Si 1.86809 * 119.99645 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47069 * 60.00160 * 8 6 4 10 10 H 1.48500 * 109.46785 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47146 * 299.99864 * 8 6 4 12 12 C 1.52997 * 109.47312 * 120.00120 * 2 1 3 13 13 N 1.46904 * 109.46950 * 300.00123 * 12 2 1 14 14 C 1.46899 * 111.00029 * 180.02562 * 13 12 2 15 15 C 1.50703 * 109.47107 * 179.97438 * 14 13 12 16 16 C 1.38255 * 119.95539 * 259.72195 * 15 14 13 17 17 C 1.38130 * 120.07924 * 179.76449 * 16 15 14 18 18 C 1.38773 * 119.99517 * 0.53577 * 17 16 15 19 19 O 1.35893 * 120.04607 * 179.69812 * 18 17 16 20 20 C 1.42897 * 116.99752 * 0.02562 * 19 18 17 21 21 F 1.39896 * 109.47359 * 299.99821 * 20 19 18 22 22 F 1.39901 * 109.47201 * 59.99948 * 20 19 18 23 23 C 1.38672 * 119.91074 * 359.71987 * 18 17 16 24 24 C 1.38385 * 119.92451 * 359.97438 * 23 18 17 25 25 F 1.35097 * 119.99868 * 179.97438 * 24 23 18 26 26 H 1.09002 * 109.47029 * 300.00286 * 1 2 3 27 27 H 1.09000 * 109.47152 * 60.00059 * 1 2 3 28 28 H 1.08993 * 109.47356 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46874 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.47103 * 299.99971 * 3 2 1 31 31 H 1.09002 * 109.47446 * 59.99970 * 3 2 1 32 32 H 0.96998 * 120.00316 * 180.02562 * 7 6 4 33 33 H 1.08995 * 109.47319 * 180.02562 * 12 2 1 34 34 H 1.09003 * 109.47435 * 59.99376 * 12 2 1 35 35 H 1.00902 * 111.00190 * 56.03777 * 13 12 2 36 36 H 1.09002 * 109.47043 * 299.99792 * 14 13 12 37 37 H 1.09001 * 109.47354 * 59.99854 * 14 13 12 38 38 H 1.08000 * 119.95947 * 0.02562 * 16 15 14 39 39 H 1.07998 * 120.00996 * 180.25074 * 17 16 15 40 40 H 1.09003 * 109.47114 * 179.97438 * 20 19 18 41 41 H 1.08005 * 120.03668 * 180.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3213 -1.1204 -4.0080 9 1 1.8256 -2.5202 -4.0077 10 1 1.8269 -0.4200 -5.2205 11 1 3.8063 -1.1211 -4.0082 12 6 2.0400 -0.7213 1.2492 13 7 1.5503 -0.0288 2.4487 14 6 2.0219 -0.6945 3.6703 15 6 1.5012 0.0428 4.8771 16 6 2.3239 0.9214 5.5573 17 6 1.8479 1.6022 6.6609 18 6 0.5458 1.3963 7.0946 19 8 0.0784 2.0609 8.1838 20 6 0.9817 2.9570 8.8341 21 9 2.1027 2.2480 9.2789 22 9 1.3845 3.9485 7.9329 23 6 -0.2775 0.5110 6.4153 24 6 0.2011 -0.1644 5.3063 25 9 -0.5995 -1.0276 4.6437 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 3.1300 1.4424 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 0.7081 1.1608 -3.4844 33 1 3.1300 -0.7209 1.2494 34 1 1.6767 -1.7489 1.2493 35 1 0.5438 0.0414 2.4401 36 1 1.6588 -1.7221 3.6873 37 1 3.1118 -0.6939 3.6869 38 1 3.3387 1.0787 5.2230 39 1 2.4902 2.2912 7.1890 40 1 0.4835 3.4210 9.6853 41 1 -1.2913 0.3495 6.7508 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000865599680.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:51 Heat of formation + Delta-G solvation = -185.135268 kcal Electronic energy + Delta-G solvation = -26546.354868 eV Core-core repulsion = 22203.717245 eV Total energy + Delta-G solvation = -4342.637623 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.30351 -50.06122 -48.29967 -41.05863 -39.08649 -38.22499 -35.63829 -33.25685 -31.94010 -31.09389 -27.76048 -27.52055 -27.23836 -26.27871 -24.52586 -24.18224 -22.52608 -20.35604 -20.26811 -19.26841 -18.87820 -18.00141 -17.92762 -17.49606 -16.97873 -16.85401 -16.43877 -16.09099 -15.98433 -15.56035 -15.51465 -14.99604 -14.91625 -14.82515 -14.62354 -14.60194 -14.29029 -14.06236 -13.79258 -13.52736 -13.28141 -13.01952 -12.88953 -12.69285 -12.59903 -12.49742 -12.34703 -12.15810 -12.10467 -12.05579 -11.31832 -10.97353 -10.61469 -10.34171 -10.03111 -9.56847 -9.17783 -7.96109 -6.13417 -0.03835 0.08452 1.44393 1.44657 1.47816 1.51809 2.35564 2.47498 2.55149 3.22784 3.25913 3.46478 3.47253 3.69190 3.70115 3.76024 3.78811 4.05415 4.14409 4.46882 4.51909 4.64712 4.68574 4.82761 4.86473 4.90868 5.01536 5.03867 5.16681 5.27142 5.29820 5.38046 5.43122 5.52979 5.69849 5.76286 5.87766 6.12447 6.21150 6.31814 6.45610 6.56431 6.95717 7.54181 9.02117 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.027360 B = 0.002599 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.161511 B =10771.515051 C =11064.441535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.060 3.940 3 C -0.105 4.105 4 C -0.528 4.528 5 H 0.047 0.953 6 C 0.022 3.978 7 N -0.904 5.904 8 Si 0.946 3.054 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.274 1.274 12 C 0.088 3.912 13 N -0.681 5.681 14 C 0.100 3.900 15 C -0.139 4.139 16 C -0.036 4.036 17 C -0.201 4.201 18 C 0.128 3.872 19 O -0.322 6.322 20 C 0.406 3.594 21 F -0.207 7.207 22 F -0.209 7.209 23 C -0.176 4.176 24 C 0.123 3.877 25 F -0.140 7.140 26 H 0.028 0.972 27 H 0.057 0.943 28 H 0.015 0.985 29 H 0.013 0.987 30 H 0.048 0.952 31 H 0.031 0.969 32 H 0.258 0.742 33 H 0.057 0.943 34 H 0.009 0.991 35 H 0.335 0.665 36 H 0.034 0.966 37 H 0.094 0.906 38 H 0.156 0.844 39 H 0.150 0.850 40 H 0.239 0.761 41 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.376 3.654 26.173 26.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.060 3.940 3 C -0.163 4.163 4 C -0.567 4.567 5 H 0.065 0.935 6 C -0.177 4.177 7 N -0.543 5.543 8 Si 0.772 3.228 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.200 1.200 12 C -0.040 4.040 13 N -0.313 5.313 14 C -0.029 4.029 15 C -0.141 4.141 16 C -0.054 4.054 17 C -0.220 4.220 18 C 0.084 3.916 19 O -0.240 6.240 20 C 0.317 3.683 21 F -0.189 7.189 22 F -0.191 7.191 23 C -0.195 4.195 24 C 0.103 3.897 25 F -0.118 7.118 26 H 0.047 0.953 27 H 0.076 0.924 28 H 0.035 0.965 29 H 0.033 0.967 30 H 0.067 0.933 31 H 0.050 0.950 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.027 0.973 35 H 0.153 0.847 36 H 0.052 0.948 37 H 0.113 0.887 38 H 0.174 0.826 39 H 0.167 0.833 40 H 0.255 0.745 41 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -0.113 4.187 26.070 26.404 hybrid contribution -0.205 -1.360 -1.387 1.953 sum -0.318 2.827 24.683 24.846 Atomic orbital electron populations 1.21675 0.98503 0.97956 0.99794 1.18131 0.92152 0.92996 0.90737 1.21461 0.97235 0.98279 0.99276 1.21413 1.31377 1.11985 0.91876 0.93497 1.25552 0.95310 0.95625 1.01232 1.69959 1.37358 1.23658 1.23372 0.85812 0.78710 0.78743 0.79496 1.20136 1.21130 1.19978 1.21873 0.98737 0.93883 0.89540 1.60660 1.16279 1.53451 1.00898 1.20804 1.01210 0.94179 0.86662 1.19932 0.93029 1.01947 0.99145 1.20934 1.00498 0.91690 0.92311 1.21733 0.95011 1.04532 1.00684 1.18484 0.92551 0.92996 0.87549 1.86617 1.41577 1.55370 1.40408 1.24361 0.78416 0.76912 0.88588 1.93086 1.56627 1.79913 1.89274 1.93099 1.91575 1.62707 1.71708 1.20304 1.02382 1.00087 0.96746 1.17340 0.88559 0.91372 0.92422 1.91502 1.73110 1.67471 1.79758 0.95307 0.92422 0.96548 0.96740 0.93337 0.94953 0.93301 0.92425 0.97260 0.84653 0.94775 0.88731 0.82593 0.83283 0.74496 0.82263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.92 7.92 71.98 0.57 -5.35 16 2 C 0.06 2.97 0.57 -52.93 -0.03 2.94 16 3 C -0.10 -5.18 8.09 71.98 0.58 -4.60 16 4 C -0.53 -28.81 8.01 25.60 0.21 -28.60 16 5 H 0.05 2.54 7.74 -2.91 -0.02 2.52 16 6 C 0.02 1.20 5.15 84.66 0.44 1.63 16 7 N -0.90 -51.19 9.35 21.45 0.20 -50.98 16 8 Si 0.95 43.68 29.54 68.60 2.03 45.71 16 9 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 10 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 11 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 12 C 0.09 3.70 4.59 86.30 0.40 4.10 16 13 N -0.68 -24.53 5.70 -517.92 -2.95 -27.48 16 14 C 0.10 2.92 5.53 85.56 0.47 3.39 16 15 C -0.14 -3.66 5.40 -19.80 -0.11 -3.77 16 16 C -0.04 -0.81 9.66 22.25 0.21 -0.59 16 17 C -0.20 -4.20 8.26 22.37 0.18 -4.01 16 18 C 0.13 2.69 6.48 22.50 0.15 2.84 16 19 O -0.32 -5.18 10.43 -92.35 -0.96 -6.15 16 20 C 0.41 3.98 5.98 113.37 0.68 4.66 16 21 F -0.21 -2.76 15.58 44.97 0.70 -2.06 16 22 F -0.21 -3.09 15.58 44.97 0.70 -2.39 16 23 C -0.18 -3.98 9.97 22.41 0.22 -3.75 16 24 C 0.12 3.26 7.24 22.36 0.16 3.42 16 25 F -0.14 -4.09 16.66 44.97 0.75 -3.34 16 26 H 0.03 1.25 6.57 -2.39 -0.02 1.24 16 27 H 0.06 3.12 6.07 -2.39 -0.01 3.10 16 28 H 0.02 0.75 8.14 -2.39 -0.02 0.74 16 29 H 0.01 0.67 8.14 -2.38 -0.02 0.65 16 30 H 0.05 2.64 6.07 -2.39 -0.01 2.63 16 31 H 0.03 1.47 7.60 -2.39 -0.02 1.45 16 32 H 0.26 14.05 8.31 -92.71 -0.77 13.28 16 33 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 34 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 35 H 0.33 12.51 6.76 -89.69 -0.61 11.91 16 36 H 0.03 1.02 7.94 -2.39 -0.02 1.00 16 37 H 0.09 2.50 8.00 -2.39 -0.02 2.48 16 38 H 0.16 2.95 8.03 -2.91 -0.02 2.93 16 39 H 0.15 2.73 5.09 -2.91 -0.01 2.71 16 40 H 0.24 -0.46 8.14 -2.39 -0.02 -0.48 16 41 H 0.16 3.00 8.06 -2.91 -0.02 2.98 16 Total: -1.00 -63.39 343.96 5.06 -58.33 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: 0.46 Total: 16.08 kcal Atomic # 6 Polarization: -31.84 SS G_CDS: 4.13 Total: -27.71 kcal Atomic # 7 Polarization: -75.72 SS G_CDS: -2.75 Total: -78.47 kcal Atomic # 8 Polarization: -5.18 SS G_CDS: -0.96 Total: -6.15 kcal Atomic # 9 Polarization: -9.94 SS G_CDS: 2.15 Total: -7.79 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -63.39 5.06 -58.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865599680.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.806 kcal (2) G-P(sol) polarization free energy of solvation -63.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds