Wall clock time and date at job start Tue Mar 31 2020 11:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.52998 * 109.46816 * 2 1 4 4 C 1.50697 * 110.43547 * 298.91011 * 3 2 1 5 5 O 1.20823 * 119.99960 * 239.30218 * 4 3 2 6 6 O 1.34231 * 120.00117 * 59.30501 * 4 3 2 7 7 C 1.45197 * 117.00295 * 179.97438 * 6 4 3 8 8 C 1.50698 * 109.47223 * 179.97438 * 7 6 4 9 9 C 1.38629 * 119.75211 * 269.72662 * 8 7 6 10 10 C 1.37616 * 120.25012 * 179.71963 * 9 8 7 11 11 C 1.40719 * 119.74315 * 0.57527 * 10 9 8 12 12 C 1.41392 * 120.24704 * 179.68305 * 11 10 9 13 13 H 1.07994 * 120.00727 * 155.31530 * 12 11 10 14 14 C 1.39953 * 119.99686 * 335.30514 * 12 11 10 15 15 N 1.30822 * 120.00058 * 342.23642 * 14 12 11 16 16 Si 1.86796 * 119.99835 * 162.23431 * 14 12 11 17 17 H 1.48503 * 109.47364 * 94.66982 * 16 14 12 18 18 H 1.48506 * 109.47333 * 214.66573 * 16 14 12 19 19 H 1.48500 * 109.47287 * 334.66793 * 16 14 12 20 20 C 1.40719 * 119.51147 * 359.70173 * 11 10 9 21 21 C 1.37615 * 119.74173 * 0.02562 * 20 11 10 22 22 C 1.54631 * 110.48060 * 176.22909 * 3 2 1 23 23 C 1.54480 * 101.76337 * 266.11596 * 22 3 2 24 24 N 1.46764 * 105.47537 * 334.58862 * 23 22 3 25 25 C 1.34419 * 111.29792 * 17.01421 * 24 23 22 26 26 O 1.21280 * 124.93713 * 179.55583 * 25 24 23 27 27 H 1.08995 * 109.46940 * 60.00321 * 1 2 3 28 28 H 1.08996 * 109.46783 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.46861 * 299.99885 * 1 2 3 30 30 H 1.08997 * 109.46553 * 239.99779 * 2 1 3 31 31 H 1.08996 * 109.46726 * 120.00187 * 2 1 3 32 32 H 1.08996 * 109.47173 * 300.00099 * 7 6 4 33 33 H 1.09005 * 109.46816 * 59.99789 * 7 6 4 34 34 H 1.07997 * 119.87576 * 359.97438 * 9 8 7 35 35 H 1.07996 * 120.13297 * 180.27835 * 10 9 8 36 36 H 0.96999 * 119.99789 * 179.97438 * 15 14 12 37 37 H 1.08000 * 120.12850 * 180.02562 * 20 11 10 38 38 H 1.08002 * 119.87569 * 180.02562 * 21 20 11 39 39 H 1.08991 * 110.97299 * 24.23709 * 22 3 2 40 40 H 1.09002 * 110.96707 * 148.00429 * 22 3 2 41 41 H 1.08997 * 110.24813 * 215.58251 * 23 22 3 42 42 H 1.09002 * 110.24426 * 93.58600 * 23 22 3 43 43 H 0.96998 * 124.34921 * 196.98971 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5717 2.1661 -1.2361 5 8 2.3784 2.6356 -2.0034 6 8 0.2584 2.2891 -1.4848 7 6 -0.1200 2.9989 -2.6937 8 6 -1.6224 3.0361 -2.8049 9 6 -2.2880 2.0211 -3.4744 10 6 -3.6602 2.0418 -3.5772 11 6 -4.3868 3.1051 -3.0098 12 6 -5.7963 3.1406 -3.1149 13 1 -6.3786 3.6858 -2.3869 14 6 -6.4370 2.4692 -4.1624 15 7 -5.7579 2.1095 -5.2212 16 14 -8.2618 2.0865 -4.0488 17 1 -9.0355 3.1585 -4.7253 18 1 -8.5369 0.7854 -4.7098 19 1 -8.6639 2.0113 -2.6213 20 6 -3.7001 4.1330 -2.3375 21 6 -2.3279 4.0886 -2.2422 22 6 3.5831 1.4709 0.0953 23 6 3.8021 1.6121 1.6179 24 7 2.5853 2.2527 2.1308 25 6 1.5781 2.1674 1.2448 26 8 0.4612 2.6069 1.4185 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 0.2671 4.0170 -2.6535 33 1 0.2956 2.4862 -3.5612 34 1 -1.7280 1.2088 -3.9136 35 1 -4.1772 1.2477 -4.0953 36 1 -6.2019 1.6439 -5.9471 37 1 -4.2478 4.9535 -1.8980 38 1 -1.7987 4.8761 -1.7263 39 1 4.0141 0.5413 -0.2762 40 1 3.9912 2.3291 -0.4387 41 1 4.6712 2.2389 1.8175 42 1 3.9319 0.6302 2.0730 43 1 2.5167 2.6822 2.9978 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870048327.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:34 Heat of formation + Delta-G solvation = -107.219501 kcal Electronic energy + Delta-G solvation = -26576.888635 eV Core-core repulsion = 22779.486434 eV Total energy + Delta-G solvation = -3797.402201 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.45738 -39.48366 -37.63486 -36.73700 -35.94654 -34.39595 -33.77795 -30.72987 -30.27922 -29.30561 -27.94252 -27.02713 -24.12938 -23.07774 -22.64130 -21.98000 -21.02464 -19.99726 -19.51717 -17.63234 -17.34286 -17.23427 -16.61002 -16.41917 -15.54092 -15.33949 -14.65513 -14.44288 -14.23447 -14.00921 -13.78821 -13.54943 -13.37345 -13.12724 -12.91249 -12.53048 -12.45087 -12.33322 -12.02515 -11.96817 -11.61379 -11.48403 -11.21998 -11.11680 -11.05550 -10.87589 -10.62805 -10.47150 -10.27084 -10.04839 -9.79410 -9.63749 -9.41378 -9.37529 -9.16154 -7.49561 -7.38508 -6.82407 -4.40743 2.11498 2.37736 2.57507 2.94464 3.04893 3.07994 3.09310 3.12695 3.38820 3.89729 3.91390 4.08131 4.45435 4.55080 4.58737 4.82096 5.04425 5.11366 5.27766 5.31073 5.47893 5.59776 5.66412 5.71048 5.73217 5.75628 6.00948 6.10428 6.22993 6.32064 6.37834 6.48704 6.67269 6.74494 6.85642 6.93556 7.02659 7.24380 7.32495 7.57918 7.80002 8.01031 8.01591 8.03627 8.07215 8.25285 8.59342 8.84217 8.92742 10.11824 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.025376 B = 0.002896 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.149677 B = 9665.561533 C = 9821.179867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.096 4.096 3 C -0.094 4.094 4 C 0.478 3.522 5 O -0.514 6.514 6 O -0.322 6.322 7 C 0.131 3.869 8 C -0.232 4.232 9 C -0.075 4.075 10 C -0.170 4.170 11 C 0.120 3.880 12 C -0.457 4.457 13 H 0.080 0.920 14 C 0.076 3.924 15 N -0.788 5.788 16 Si 0.909 3.091 17 H -0.270 1.270 18 H -0.275 1.275 19 H -0.259 1.259 20 C -0.229 4.229 21 C -0.060 4.060 22 C -0.121 4.121 23 C 0.102 3.898 24 N -0.733 5.733 25 C 0.531 3.469 26 O -0.490 6.490 27 H 0.088 0.912 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.088 0.912 35 H 0.119 0.881 36 H 0.282 0.718 37 H 0.094 0.906 38 H 0.088 0.912 39 H 0.100 0.900 40 H 0.101 0.899 41 H 0.084 0.916 42 H 0.075 0.925 43 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.924 -5.331 10.179 20.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.133 4.133 3 C -0.099 4.099 4 C 0.320 3.680 5 O -0.404 6.404 6 O -0.238 6.238 7 C 0.059 3.941 8 C -0.233 4.233 9 C -0.094 4.094 10 C -0.189 4.189 11 C 0.117 3.883 12 C -0.486 4.486 13 H 0.098 0.902 14 C -0.143 4.143 15 N -0.412 5.412 16 Si 0.733 3.267 17 H -0.195 1.195 18 H -0.200 1.200 19 H -0.183 1.183 20 C -0.249 4.249 21 C -0.079 4.079 22 C -0.159 4.159 23 C -0.022 4.022 24 N -0.391 5.391 25 C 0.314 3.686 26 O -0.362 6.362 27 H 0.107 0.893 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.106 0.894 35 H 0.137 0.863 36 H 0.093 0.907 37 H 0.112 0.888 38 H 0.106 0.894 39 H 0.118 0.882 40 H 0.119 0.881 41 H 0.103 0.897 42 H 0.094 0.906 43 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 16.467 -5.093 9.651 19.755 hybrid contribution -0.623 0.074 0.202 0.659 sum 15.844 -5.019 9.853 19.321 Atomic orbital electron populations 1.22112 0.93103 1.02046 1.05632 1.21417 0.98581 0.90074 1.03268 1.21460 0.97826 0.98512 0.92053 1.22621 0.82379 0.77069 0.85914 1.90615 1.55613 1.46116 1.48075 1.86863 1.23280 1.68394 1.45225 1.21794 0.94253 0.94878 0.83193 1.18619 0.90844 1.01185 1.12652 1.20505 0.94805 0.96035 0.98050 1.21270 0.92219 0.99919 1.05507 1.17677 0.93242 0.89196 0.88194 1.19664 0.91941 1.27684 1.09297 0.90225 1.25959 1.00999 0.93216 0.94106 1.69828 1.38564 1.28511 1.04327 0.86294 0.81969 0.78616 0.79860 1.19508 1.19958 1.18309 1.20951 0.93089 1.00382 1.10439 1.20385 0.94239 0.96330 0.96910 1.22766 0.91606 1.05873 0.95634 1.22111 0.87738 0.98477 0.93892 1.46100 1.12740 1.59814 1.20426 1.20126 0.84651 0.79035 0.84792 1.90870 1.19598 1.47107 1.78657 0.89340 0.92486 0.91563 0.90248 0.90472 0.92179 0.91967 0.89388 0.86322 0.90731 0.88773 0.89368 0.88175 0.88052 0.89739 0.90630 0.74703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.42 9.14 37.16 0.34 -2.08 16 2 C -0.10 -1.04 4.94 -26.73 -0.13 -1.17 16 3 C -0.09 -1.17 0.61 -155.68 -0.09 -1.26 16 4 C 0.48 7.94 6.54 36.00 0.24 8.18 16 5 O -0.51 -9.14 15.27 -18.75 -0.29 -9.43 16 6 O -0.32 -6.19 6.91 -40.86 -0.28 -6.47 16 7 C 0.13 2.60 5.58 36.00 0.20 2.80 16 8 C -0.23 -5.31 5.54 -104.33 -0.58 -5.89 16 9 C -0.08 -1.79 9.67 -39.66 -0.38 -2.17 16 10 C -0.17 -4.44 8.70 -38.87 -0.34 -4.77 16 11 C 0.12 3.22 5.57 -106.82 -0.60 2.63 16 12 C -0.46 -12.14 9.05 -37.74 -0.34 -12.48 16 13 H 0.08 2.03 7.91 -52.49 -0.41 1.62 16 14 C 0.08 1.89 5.14 -17.34 -0.09 1.80 16 15 N -0.79 -20.16 10.97 55.55 0.61 -19.55 16 16 Si 0.91 18.51 29.59 -169.99 -5.03 13.48 16 17 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 18 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 19 H -0.26 -5.27 7.11 56.52 0.40 -4.86 16 20 C -0.23 -5.79 9.80 -38.87 -0.38 -6.17 16 21 C -0.06 -1.43 9.67 -39.66 -0.38 -1.81 16 22 C -0.12 -1.01 6.00 -25.10 -0.15 -1.16 16 23 C 0.10 0.60 7.78 -3.12 -0.02 0.58 16 24 N -0.73 -6.59 6.24 -59.20 -0.37 -6.96 16 25 C 0.53 7.26 6.62 -10.86 -0.07 7.19 16 26 O -0.49 -8.97 16.18 5.14 0.08 -8.88 16 27 H 0.09 1.51 5.43 -51.93 -0.28 1.23 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.07 1.04 6.43 -51.93 -0.33 0.71 16 30 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 1.16 8.07 -51.93 -0.42 0.74 16 33 H 0.06 1.17 8.07 -51.93 -0.42 0.75 16 34 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 35 H 0.12 3.17 6.18 -52.49 -0.32 2.84 16 36 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 37 H 0.09 2.24 8.06 -52.49 -0.42 1.82 16 38 H 0.09 1.91 8.06 -52.49 -0.42 1.48 16 39 H 0.10 0.60 7.90 -51.93 -0.41 0.19 16 40 H 0.10 0.98 7.04 -51.93 -0.37 0.61 16 41 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 42 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 43 H 0.41 2.96 8.96 -40.82 -0.37 2.59 16 LS Contribution 355.99 15.07 5.36 5.36 Total: -1.00 -31.79 355.99 -8.55 -40.34 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -5.85 Total: 7.90 kcal Atomic # 6 Polarization: -13.00 SS G_CDS: -2.79 Total: -15.79 kcal Atomic # 7 Polarization: -26.76 SS G_CDS: 0.24 Total: -26.52 kcal Atomic # 8 Polarization: -24.30 SS G_CDS: -0.49 Total: -24.78 kcal Atomic # 14 Polarization: 18.51 SS G_CDS: -5.03 Total: 13.48 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.79 -8.55 -40.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870048327.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.880 kcal (2) G-P(sol) polarization free energy of solvation -31.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds