Wall clock time and date at job start Tue Mar 31 2020 11:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.52998 * 109.46816 * 2 1 4 4 C 1.50697 * 110.43547 * 298.91011 * 3 2 1 5 5 O 1.20823 * 119.99960 * 239.30218 * 4 3 2 6 6 O 1.34231 * 120.00117 * 59.30501 * 4 3 2 7 7 C 1.45197 * 117.00295 * 179.97438 * 6 4 3 8 8 C 1.50698 * 109.47223 * 179.97438 * 7 6 4 9 9 C 1.38629 * 119.75211 * 269.72662 * 8 7 6 10 10 C 1.37616 * 120.25012 * 179.71963 * 9 8 7 11 11 C 1.40719 * 119.74315 * 0.57527 * 10 9 8 12 12 C 1.41392 * 120.24704 * 179.68305 * 11 10 9 13 13 H 1.07994 * 120.00727 * 155.31530 * 12 11 10 14 14 C 1.39953 * 119.99686 * 335.30514 * 12 11 10 15 15 N 1.30822 * 120.00058 * 342.23642 * 14 12 11 16 16 Si 1.86796 * 119.99835 * 162.23431 * 14 12 11 17 17 H 1.48503 * 109.47364 * 94.66982 * 16 14 12 18 18 H 1.48506 * 109.47333 * 214.66573 * 16 14 12 19 19 H 1.48500 * 109.47287 * 334.66793 * 16 14 12 20 20 C 1.40719 * 119.51147 * 359.70173 * 11 10 9 21 21 C 1.37615 * 119.74173 * 0.02562 * 20 11 10 22 22 C 1.54631 * 110.48060 * 176.22909 * 3 2 1 23 23 C 1.54480 * 101.76337 * 266.11596 * 22 3 2 24 24 N 1.46764 * 105.47537 * 334.58862 * 23 22 3 25 25 C 1.34419 * 111.29792 * 17.01421 * 24 23 22 26 26 O 1.21280 * 124.93713 * 179.55583 * 25 24 23 27 27 H 1.08995 * 109.46940 * 60.00321 * 1 2 3 28 28 H 1.08996 * 109.46783 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.46861 * 299.99885 * 1 2 3 30 30 H 1.08997 * 109.46553 * 239.99779 * 2 1 3 31 31 H 1.08996 * 109.46726 * 120.00187 * 2 1 3 32 32 H 1.08996 * 109.47173 * 300.00099 * 7 6 4 33 33 H 1.09005 * 109.46816 * 59.99789 * 7 6 4 34 34 H 1.07997 * 119.87576 * 359.97438 * 9 8 7 35 35 H 1.07996 * 120.13297 * 180.27835 * 10 9 8 36 36 H 0.96999 * 119.99789 * 179.97438 * 15 14 12 37 37 H 1.08000 * 120.12850 * 180.02562 * 20 11 10 38 38 H 1.08002 * 119.87569 * 180.02562 * 21 20 11 39 39 H 1.08991 * 110.97299 * 24.23709 * 22 3 2 40 40 H 1.09002 * 110.96707 * 148.00429 * 22 3 2 41 41 H 1.08997 * 110.24813 * 215.58251 * 23 22 3 42 42 H 1.09002 * 110.24426 * 93.58600 * 23 22 3 43 43 H 0.96998 * 124.34921 * 196.98971 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5717 2.1661 -1.2361 5 8 2.3784 2.6356 -2.0034 6 8 0.2584 2.2891 -1.4848 7 6 -0.1200 2.9989 -2.6937 8 6 -1.6224 3.0361 -2.8049 9 6 -2.2880 2.0211 -3.4744 10 6 -3.6602 2.0418 -3.5772 11 6 -4.3868 3.1051 -3.0098 12 6 -5.7963 3.1406 -3.1149 13 1 -6.3786 3.6858 -2.3869 14 6 -6.4370 2.4692 -4.1624 15 7 -5.7579 2.1095 -5.2212 16 14 -8.2618 2.0865 -4.0488 17 1 -9.0355 3.1585 -4.7253 18 1 -8.5369 0.7854 -4.7098 19 1 -8.6639 2.0113 -2.6213 20 6 -3.7001 4.1330 -2.3375 21 6 -2.3279 4.0886 -2.2422 22 6 3.5831 1.4709 0.0953 23 6 3.8021 1.6121 1.6179 24 7 2.5853 2.2527 2.1308 25 6 1.5781 2.1674 1.2448 26 8 0.4612 2.6069 1.4185 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 0.2671 4.0170 -2.6535 33 1 0.2956 2.4862 -3.5612 34 1 -1.7280 1.2088 -3.9136 35 1 -4.1772 1.2477 -4.0953 36 1 -6.2019 1.6439 -5.9471 37 1 -4.2478 4.9535 -1.8980 38 1 -1.7987 4.8761 -1.7263 39 1 4.0141 0.5413 -0.2762 40 1 3.9912 2.3291 -0.4387 41 1 4.6712 2.2389 1.8175 42 1 3.9319 0.6302 2.0730 43 1 2.5167 2.6822 2.9978 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870048327.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:32 Heat of formation + Delta-G solvation = -126.788289 kcal Electronic energy + Delta-G solvation = -26577.737202 eV Core-core repulsion = 22779.486434 eV Total energy + Delta-G solvation = -3798.250767 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.51216 -40.73394 -39.47760 -37.91288 -37.26369 -35.73736 -35.23228 -32.58125 -31.25546 -31.11482 -29.22900 -28.40908 -25.81698 -24.01074 -23.87145 -22.98032 -22.78191 -21.85998 -20.67889 -19.28965 -18.54706 -18.50897 -17.85359 -17.52562 -17.15781 -16.68819 -16.08056 -15.72583 -15.48670 -15.32982 -15.23991 -14.76114 -14.50199 -14.38009 -14.12417 -14.06619 -13.89213 -13.82668 -13.33106 -13.16958 -13.08638 -12.80617 -12.78673 -12.62015 -12.41032 -12.23081 -12.08086 -11.77937 -11.68488 -11.55044 -11.44131 -11.30442 -11.03771 -10.83772 -10.11201 -9.45309 -9.35036 -8.70314 -6.40825 0.69633 0.93474 1.08707 1.32998 1.37905 1.46439 1.53520 1.91664 2.19087 2.34957 2.69486 3.09424 3.25596 3.60222 3.66889 3.83876 3.92713 4.04201 4.07024 4.32608 4.36265 4.41650 4.45164 4.46925 4.51131 4.74467 4.79644 4.94489 4.96666 4.98440 5.09583 5.10441 5.14902 5.27791 5.37029 5.42047 5.58911 5.62907 5.75111 5.86471 5.93518 6.03326 6.11994 6.30072 6.61892 6.64724 6.86895 6.95099 7.14739 8.27073 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.025376 B = 0.002896 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.149677 B = 9665.561533 C = 9821.179867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.090 4.090 3 C -0.095 4.095 4 C 0.471 3.529 5 O -0.529 6.529 6 O -0.337 6.337 7 C 0.135 3.865 8 C -0.227 4.227 9 C -0.077 4.077 10 C -0.190 4.190 11 C 0.089 3.911 12 C -0.495 4.495 13 H 0.077 0.923 14 C 0.036 3.964 15 N -0.817 5.817 16 Si 0.985 3.015 17 H -0.261 1.261 18 H -0.263 1.263 19 H -0.260 1.260 20 C -0.247 4.247 21 C -0.068 4.068 22 C -0.116 4.116 23 C 0.102 3.898 24 N -0.717 5.717 25 C 0.520 3.480 26 O -0.552 6.552 27 H 0.053 0.947 28 H 0.072 0.928 29 H 0.042 0.958 30 H 0.097 0.903 31 H 0.114 0.886 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.110 0.890 35 H 0.107 0.893 36 H 0.291 0.709 37 H 0.099 0.901 38 H 0.106 0.894 39 H 0.132 0.868 40 H 0.086 0.914 41 H 0.114 0.886 42 H 0.111 0.889 43 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.310 -6.903 11.241 23.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.128 4.128 3 C -0.099 4.099 4 C 0.314 3.686 5 O -0.419 6.419 6 O -0.253 6.253 7 C 0.063 3.937 8 C -0.228 4.228 9 C -0.095 4.095 10 C -0.210 4.210 11 C 0.087 3.913 12 C -0.523 4.523 13 H 0.095 0.905 14 C -0.180 4.180 15 N -0.442 5.442 16 Si 0.805 3.195 17 H -0.185 1.185 18 H -0.187 1.187 19 H -0.183 1.183 20 C -0.266 4.266 21 C -0.086 4.086 22 C -0.154 4.154 23 C -0.020 4.020 24 N -0.373 5.373 25 C 0.304 3.696 26 O -0.429 6.429 27 H 0.072 0.928 28 H 0.091 0.909 29 H 0.061 0.939 30 H 0.116 0.884 31 H 0.132 0.868 32 H 0.082 0.918 33 H 0.092 0.908 34 H 0.128 0.872 35 H 0.125 0.875 36 H 0.102 0.898 37 H 0.117 0.883 38 H 0.125 0.875 39 H 0.150 0.850 40 H 0.105 0.895 41 H 0.132 0.868 42 H 0.129 0.871 43 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 18.938 -6.668 10.738 22.768 hybrid contribution -1.153 0.577 -0.083 1.292 sum 17.785 -6.091 10.655 21.608 Atomic orbital electron populations 1.22047 0.96012 1.02077 1.02705 1.21496 0.95865 0.89491 1.05912 1.21691 1.00666 0.98457 0.89123 1.23521 0.81081 0.76854 0.87124 1.90599 1.55500 1.46790 1.49020 1.86872 1.25434 1.68462 1.44483 1.21587 0.92162 0.95582 0.84378 1.18937 0.92711 1.00183 1.10985 1.20741 0.94204 0.96832 0.97733 1.21259 0.93250 0.99864 1.06607 1.18025 0.94085 0.90005 0.89194 1.19903 0.92221 1.29708 1.10495 0.90461 1.26822 1.05818 0.92271 0.93064 1.69864 1.40719 1.28706 1.04955 0.85157 0.75673 0.78905 0.79774 1.18534 1.18686 1.18344 1.21134 0.93990 1.00513 1.10977 1.20654 0.93897 0.97157 0.96886 1.22907 0.87905 1.07017 0.97533 1.22473 0.86901 1.00702 0.91962 1.46145 1.12655 1.58469 1.20039 1.20449 0.84541 0.78774 0.85878 1.90839 1.22240 1.49901 1.79970 0.92791 0.90929 0.93899 0.88415 0.86791 0.91824 0.90809 0.87198 0.87518 0.89783 0.88277 0.87546 0.84964 0.89491 0.86823 0.87129 0.73616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.77 9.14 71.99 0.66 -4.11 16 2 C -0.09 -1.70 4.94 30.60 0.15 -1.55 16 3 C -0.09 -2.16 0.61 -52.94 -0.03 -2.19 16 4 C 0.47 15.32 6.54 71.23 0.47 15.79 16 5 O -0.53 -18.27 15.27 21.97 0.34 -17.94 16 6 O -0.34 -13.09 6.91 -49.91 -0.34 -13.44 16 7 C 0.14 5.41 5.58 71.24 0.40 5.81 16 8 C -0.23 -10.61 5.54 -19.68 -0.11 -10.72 16 9 C -0.08 -3.74 9.67 22.22 0.21 -3.52 16 10 C -0.19 -10.37 8.70 22.73 0.20 -10.17 16 11 C 0.09 5.04 5.57 -21.29 -0.12 4.93 16 12 C -0.49 -27.39 9.05 23.46 0.21 -27.18 16 13 H 0.08 4.14 7.91 -2.91 -0.02 4.11 16 14 C 0.04 1.85 5.14 85.26 0.44 2.29 16 15 N -0.82 -42.89 10.97 21.83 0.24 -42.65 16 16 Si 0.98 38.38 29.59 68.60 2.03 40.41 16 17 H -0.26 -9.72 7.11 99.48 0.71 -9.02 16 18 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 19 H -0.26 -10.03 7.11 99.48 0.71 -9.33 16 20 C -0.25 -13.02 9.80 22.73 0.22 -12.80 16 21 C -0.07 -3.29 9.67 22.22 0.21 -3.08 16 22 C -0.12 -1.48 6.00 31.65 0.19 -1.29 16 23 C 0.10 0.70 7.78 86.83 0.68 1.37 16 24 N -0.72 -10.85 6.24 -459.81 -2.87 -13.72 16 25 C 0.52 13.65 6.62 87.90 0.58 14.23 16 26 O -0.55 -20.75 16.18 -2.63 -0.04 -20.79 16 27 H 0.05 1.88 5.43 -2.39 -0.01 1.87 16 28 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.04 1.38 6.43 -2.39 -0.02 1.36 16 30 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.06 2.47 8.07 -2.39 -0.02 2.45 16 33 H 0.07 2.74 8.07 -2.38 -0.02 2.72 16 34 H 0.11 4.74 8.06 -2.91 -0.02 4.72 16 35 H 0.11 5.97 6.18 -2.91 -0.02 5.95 16 36 H 0.29 13.67 8.30 -92.71 -0.77 12.90 16 37 H 0.10 4.95 8.06 -2.91 -0.02 4.93 16 38 H 0.11 4.68 8.06 -2.91 -0.02 4.66 16 39 H 0.13 0.86 7.90 -2.39 -0.02 0.84 16 40 H 0.09 1.41 7.04 -2.39 -0.02 1.40 16 41 H 0.11 0.24 8.14 -2.39 -0.02 0.22 16 42 H 0.11 0.14 8.14 -2.39 -0.02 0.12 16 43 H 0.42 4.98 8.96 -92.71 -0.83 4.15 16 Total: -1.00 -74.57 355.99 3.92 -70.65 By element: Atomic # 1 Polarization: 29.45 SS G_CDS: 0.21 Total: 29.66 kcal Atomic # 6 Polarization: -36.56 SS G_CDS: 4.36 Total: -32.20 kcal Atomic # 7 Polarization: -53.74 SS G_CDS: -2.63 Total: -56.37 kcal Atomic # 8 Polarization: -52.11 SS G_CDS: -0.05 Total: -52.16 kcal Atomic # 14 Polarization: 38.38 SS G_CDS: 2.03 Total: 40.41 kcal Total: -74.57 3.92 -70.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870048327.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.133 kcal (2) G-P(sol) polarization free energy of solvation -74.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds