Wall clock time and date at job start Tue Mar 31 2020 11:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47398 * 2 1 4 4 C 1.53000 * 109.46852 * 239.99834 * 2 1 3 5 5 C 1.50702 * 109.47187 * 120.00378 * 2 1 3 6 6 N 1.30261 * 125.61822 * 60.31265 * 5 2 1 7 7 C 1.34480 * 108.69697 * 180.18984 * 6 5 2 8 8 C 1.50702 * 126.16138 * 179.82397 * 7 6 5 9 9 O 1.42907 * 109.46965 * 179.71603 * 8 7 6 10 10 C 1.35900 * 117.00011 * 180.02562 * 9 8 7 11 11 C 1.38827 * 120.02115 * 359.72410 * 10 9 8 12 12 C 1.38189 * 120.07765 * 179.72294 * 11 10 9 13 13 C 1.38149 * 120.12438 * 0.55361 * 12 11 10 14 14 C 1.38890 * 120.03979 * 359.72018 * 13 12 11 15 15 O 1.35754 * 120.03567 * 179.97438 * 14 13 12 16 16 C 1.34836 * 116.99505 * 174.48878 * 15 14 13 17 17 H 1.08001 * 120.00214 * 5.05661 * 16 15 14 18 18 C 1.38659 * 119.99788 * 185.05604 * 16 15 14 19 19 N 1.31554 * 119.99670 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99953 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47184 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.46889 * 120.00096 * 20 18 16 23 23 H 1.48497 * 109.47286 * 240.00297 * 20 18 16 24 24 C 1.38571 * 120.01894 * 179.97438 * 10 9 8 25 25 C 1.34325 * 107.66863 * 359.56032 * 7 6 5 26 26 O 1.33969 * 125.62083 * 240.02092 * 5 2 1 27 27 H 1.09006 * 109.47131 * 299.99591 * 1 2 3 28 28 H 1.08998 * 109.47433 * 59.99635 * 1 2 3 29 29 H 1.09007 * 109.47572 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46887 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47126 * 300.00552 * 3 2 1 32 32 H 1.09005 * 109.47083 * 60.00419 * 3 2 1 33 33 H 1.08996 * 109.47393 * 300.00430 * 4 2 1 34 34 H 1.09008 * 109.46661 * 60.00083 * 4 2 1 35 35 H 1.08999 * 109.47211 * 180.02562 * 4 2 1 36 36 H 1.09002 * 109.47541 * 59.71740 * 8 7 6 37 37 H 1.08996 * 109.47325 * 299.71306 * 8 7 6 38 38 H 1.08005 * 119.95663 * 359.97438 * 11 10 9 39 39 H 1.08008 * 119.93521 * 180.25076 * 12 11 10 40 40 H 1.08003 * 119.97608 * 179.69786 * 13 12 11 41 41 H 0.97005 * 119.99481 * 179.97438 * 19 18 16 42 42 H 1.08003 * 120.06077 * 359.97438 * 24 10 9 43 43 H 1.08002 * 126.43883 * 180.23828 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 2.0323 -0.7105 1.2304 6 7 1.7908 -1.9522 1.5412 7 6 2.3989 -2.2308 2.7078 8 6 2.3736 -3.5531 3.4303 9 8 3.1423 -3.4546 4.6310 10 6 3.2228 -4.5687 5.4051 11 6 2.5698 -5.7314 5.0192 12 6 2.6555 -6.8665 5.8026 13 6 3.3816 -6.8447 6.9777 14 6 4.0322 -5.6826 7.3715 15 8 4.7453 -5.6611 8.5265 16 6 5.4450 -4.5398 8.7931 17 1 5.3572 -3.6813 8.1438 18 6 6.2773 -4.4889 9.9009 19 7 6.3846 -5.5349 10.6916 20 14 7.2472 -2.9357 10.2699 21 1 6.9531 -1.9111 9.2360 22 1 6.8596 -2.4157 11.6058 23 1 8.6995 -3.2453 10.2615 24 6 3.9525 -4.5432 6.5829 25 6 3.0378 -1.1198 3.1100 26 8 2.8055 -0.1707 2.1821 27 1 -0.3634 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 3.1301 1.4423 0.0005 31 1 1.6766 1.9563 -0.8899 32 1 1.6768 1.9563 0.8901 33 1 1.6765 -1.7489 -1.2493 34 1 1.6765 -0.2074 -2.1392 35 1 3.1299 -0.7217 -1.2491 36 1 2.7983 -4.3257 2.7893 37 1 1.3443 -3.8120 3.6782 38 1 1.9974 -5.7499 4.1034 39 1 2.1499 -7.7710 5.4980 40 1 3.4430 -7.7319 7.5906 41 1 6.9672 -5.4994 11.4664 42 1 4.4582 -3.6385 6.8866 43 1 3.6267 -1.0080 4.0085 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877885999.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:57 Heat of formation + Delta-G solvation = -25.764575 kcal Electronic energy + Delta-G solvation = -25278.093974 eV Core-core repulsion = 21484.223924 eV Total energy + Delta-G solvation = -3793.870050 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.52753 -39.68073 -38.19911 -37.31511 -35.83342 -34.92519 -32.29143 -30.94968 -29.39067 -28.61800 -27.79200 -27.70513 -26.72651 -25.36457 -23.48910 -22.00865 -21.76876 -20.88108 -19.65211 -18.20255 -17.82763 -17.12814 -16.90418 -15.78743 -15.57307 -15.41807 -15.32592 -15.12295 -14.66940 -14.38878 -14.29762 -13.90688 -13.61721 -13.54285 -13.05483 -12.75114 -12.66658 -12.39747 -12.21012 -12.20772 -12.09186 -11.93696 -11.64203 -11.55301 -11.40155 -11.19652 -10.99937 -10.94825 -10.73621 -10.52694 -10.40399 -10.34770 -9.47737 -8.86706 -8.85800 -7.76727 -7.29230 -6.48264 -4.07642 1.35054 2.17744 2.29648 2.46287 2.55513 3.05210 3.11757 3.13491 3.19102 3.89845 3.95683 4.35813 4.44077 4.52426 4.53603 4.76045 5.01392 5.06180 5.16039 5.20449 5.21451 5.32879 5.33617 5.34917 5.36488 5.43270 5.44643 5.55273 5.62601 5.72695 5.75160 5.81709 5.85677 5.90995 6.06673 6.09719 6.22750 6.35548 6.62883 6.97218 7.05676 7.20058 7.38433 7.48715 7.59077 7.95524 7.98481 8.97459 9.65030 10.69435 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.017051 B = 0.002584 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.741439 B =10831.537942 C =12274.219064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.034 3.966 3 C -0.147 4.147 4 C -0.139 4.139 5 C 0.197 3.803 6 N -0.469 5.469 7 C -0.021 4.021 8 C 0.151 3.849 9 O -0.322 6.322 10 C 0.168 3.832 11 C -0.296 4.296 12 C -0.043 4.043 13 C -0.218 4.218 14 C 0.183 3.817 15 O -0.170 6.170 16 C -0.393 4.393 17 H 0.095 0.905 18 C 0.040 3.960 19 N -0.861 5.861 20 Si 0.941 3.059 21 H -0.266 1.266 22 H -0.275 1.275 23 H -0.275 1.275 24 C -0.263 4.263 25 C -0.047 4.047 26 O -0.199 6.199 27 H 0.059 0.941 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.059 0.941 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.113 0.887 39 H 0.116 0.884 40 H 0.119 0.881 41 H 0.270 0.730 42 H 0.135 0.865 43 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.259 10.898 -20.851 25.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.033 3.967 3 C -0.205 4.205 4 C -0.197 4.197 5 C -0.011 4.011 6 N -0.200 5.200 7 C -0.140 4.140 8 C 0.075 3.925 9 O -0.236 6.236 10 C 0.124 3.876 11 C -0.315 4.315 12 C -0.061 4.061 13 C -0.238 4.238 14 C 0.129 3.871 15 O -0.073 6.073 16 C -0.469 4.469 17 H 0.112 0.888 18 C -0.164 4.164 19 N -0.495 5.495 20 Si 0.766 3.234 21 H -0.190 1.190 22 H -0.201 1.201 23 H -0.201 1.201 24 C -0.283 4.283 25 C -0.117 4.117 26 O -0.085 6.085 27 H 0.078 0.922 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.078 0.922 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.131 0.869 39 H 0.134 0.866 40 H 0.137 0.863 41 H 0.080 0.920 42 H 0.153 0.847 43 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -9.343 10.488 -20.759 25.064 hybrid contribution 0.858 0.978 0.680 1.468 sum -8.484 11.466 -20.079 24.630 Atomic orbital electron populations 1.21904 0.91677 1.03521 1.02607 1.19097 0.96444 0.94456 0.86753 1.21919 1.01983 0.93570 1.03015 1.21903 1.01552 1.01259 0.94992 1.26170 0.93527 0.88472 0.92886 1.70099 1.23084 1.13700 1.13079 1.21218 1.01387 0.97155 0.94216 1.20336 0.96397 0.91338 0.84467 1.85835 1.68948 1.35437 1.33332 1.18535 0.94712 0.84318 0.90018 1.20663 1.11924 0.94498 1.04464 1.20413 0.95961 0.96680 0.93091 1.20181 1.06428 0.97395 0.99782 1.19015 0.90267 0.92106 0.85744 1.84009 1.53150 1.39325 1.30822 1.21424 1.22967 0.90931 1.11549 0.88792 1.25308 0.96895 0.99005 0.95241 1.70050 1.36271 1.28925 1.14271 0.85637 0.79071 0.79871 0.78822 1.19000 1.20101 1.20088 1.20297 1.10322 1.01082 0.96553 1.24929 1.04429 0.86862 0.95483 1.84463 1.54488 1.40828 1.28726 0.92178 0.90970 0.91101 0.91750 0.90960 0.91752 0.91096 0.90974 0.92177 0.90257 0.90258 0.86930 0.86621 0.86283 0.91990 0.84735 0.76049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 8.46 37.16 0.31 -0.66 16 2 C 0.03 0.27 0.99 -155.66 -0.15 0.12 16 3 C -0.15 -0.96 8.02 37.16 0.30 -0.66 16 4 C -0.14 -0.97 8.46 37.16 0.31 -0.66 16 5 C 0.20 2.33 6.47 -12.94 -0.08 2.24 16 6 N -0.47 -6.40 11.29 -7.35 -0.08 -6.48 16 7 C -0.02 -0.29 7.09 -82.81 -0.59 -0.88 16 8 C 0.15 2.15 5.36 36.01 0.19 2.35 16 9 O -0.32 -5.55 9.43 -19.43 -0.18 -5.73 16 10 C 0.17 3.28 6.68 -39.24 -0.26 3.02 16 11 C -0.30 -5.23 9.04 -39.38 -0.36 -5.58 16 12 C -0.04 -0.77 10.03 -39.63 -0.40 -1.17 16 13 C -0.22 -4.62 9.99 -39.37 -0.39 -5.01 16 14 C 0.18 4.46 6.64 -39.13 -0.26 4.20 16 15 O -0.17 -4.85 9.76 0.02 0.00 -4.85 16 16 C -0.39 -10.96 9.49 30.89 0.29 -10.67 16 17 H 0.09 2.45 5.20 -52.49 -0.27 2.18 16 18 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 19 N -0.86 -25.09 13.67 55.48 0.76 -24.33 16 20 Si 0.94 20.51 29.55 -169.99 -5.02 15.49 16 21 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 22 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 23 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 24 C -0.26 -5.90 9.10 -39.25 -0.36 -6.26 16 25 C -0.05 -0.62 11.50 29.35 0.34 -0.28 16 26 O -0.20 -2.51 10.17 5.37 0.05 -2.46 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.34 8.14 -51.92 -0.42 -0.08 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.08 1.08 7.67 -51.93 -0.40 0.68 16 37 H 0.08 1.07 7.65 -51.93 -0.40 0.68 16 38 H 0.11 1.67 6.29 -52.48 -0.33 1.34 16 39 H 0.12 1.67 8.06 -52.48 -0.42 1.25 16 40 H 0.12 2.40 8.06 -52.48 -0.42 1.98 16 41 H 0.27 7.19 8.31 -40.82 -0.34 6.86 16 42 H 0.14 3.07 5.64 -52.48 -0.30 2.78 16 43 H 0.22 2.60 7.86 -52.49 -0.41 2.19 16 LS Contribution 366.02 15.07 5.52 5.52 Total: -1.00 -31.78 366.02 -6.05 -37.83 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -5.89 Total: 3.91 kcal Atomic # 6 Polarization: -17.69 SS G_CDS: -1.20 Total: -18.89 kcal Atomic # 7 Polarization: -31.49 SS G_CDS: 0.68 Total: -30.81 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: -0.13 Total: -13.03 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.78 -6.05 -37.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877885999.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.063 kcal (2) G-P(sol) polarization free energy of solvation -31.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds