Wall clock time and date at job start Tue Mar 31 2020 11:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47398 * 2 1 4 4 C 1.53000 * 109.46852 * 239.99834 * 2 1 3 5 5 C 1.50702 * 109.47187 * 120.00378 * 2 1 3 6 6 N 1.30261 * 125.61822 * 60.31265 * 5 2 1 7 7 C 1.34480 * 108.69697 * 180.18984 * 6 5 2 8 8 C 1.50702 * 126.16138 * 179.82397 * 7 6 5 9 9 O 1.42907 * 109.46965 * 179.71603 * 8 7 6 10 10 C 1.35900 * 117.00011 * 180.02562 * 9 8 7 11 11 C 1.38827 * 120.02115 * 359.72410 * 10 9 8 12 12 C 1.38189 * 120.07765 * 179.72294 * 11 10 9 13 13 C 1.38149 * 120.12438 * 0.55361 * 12 11 10 14 14 C 1.38890 * 120.03979 * 359.72018 * 13 12 11 15 15 O 1.35754 * 120.03567 * 179.97438 * 14 13 12 16 16 C 1.34836 * 116.99505 * 174.48878 * 15 14 13 17 17 H 1.08001 * 120.00214 * 5.05661 * 16 15 14 18 18 C 1.38659 * 119.99788 * 185.05604 * 16 15 14 19 19 N 1.31554 * 119.99670 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99953 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47184 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.46889 * 120.00096 * 20 18 16 23 23 H 1.48497 * 109.47286 * 240.00297 * 20 18 16 24 24 C 1.38571 * 120.01894 * 179.97438 * 10 9 8 25 25 C 1.34325 * 107.66863 * 359.56032 * 7 6 5 26 26 O 1.33969 * 125.62083 * 240.02092 * 5 2 1 27 27 H 1.09006 * 109.47131 * 299.99591 * 1 2 3 28 28 H 1.08998 * 109.47433 * 59.99635 * 1 2 3 29 29 H 1.09007 * 109.47572 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46887 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47126 * 300.00552 * 3 2 1 32 32 H 1.09005 * 109.47083 * 60.00419 * 3 2 1 33 33 H 1.08996 * 109.47393 * 300.00430 * 4 2 1 34 34 H 1.09008 * 109.46661 * 60.00083 * 4 2 1 35 35 H 1.08999 * 109.47211 * 180.02562 * 4 2 1 36 36 H 1.09002 * 109.47541 * 59.71740 * 8 7 6 37 37 H 1.08996 * 109.47325 * 299.71306 * 8 7 6 38 38 H 1.08005 * 119.95663 * 359.97438 * 11 10 9 39 39 H 1.08008 * 119.93521 * 180.25076 * 12 11 10 40 40 H 1.08003 * 119.97608 * 179.69786 * 13 12 11 41 41 H 0.97005 * 119.99481 * 179.97438 * 19 18 16 42 42 H 1.08003 * 120.06077 * 359.97438 * 24 10 9 43 43 H 1.08002 * 126.43883 * 180.23828 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 2.0323 -0.7105 1.2304 6 7 1.7908 -1.9522 1.5412 7 6 2.3989 -2.2308 2.7078 8 6 2.3736 -3.5531 3.4303 9 8 3.1423 -3.4546 4.6310 10 6 3.2228 -4.5687 5.4051 11 6 2.5698 -5.7314 5.0192 12 6 2.6555 -6.8665 5.8026 13 6 3.3816 -6.8447 6.9777 14 6 4.0322 -5.6826 7.3715 15 8 4.7453 -5.6611 8.5265 16 6 5.4450 -4.5398 8.7931 17 1 5.3572 -3.6813 8.1438 18 6 6.2773 -4.4889 9.9009 19 7 6.3846 -5.5349 10.6916 20 14 7.2472 -2.9357 10.2699 21 1 6.9531 -1.9111 9.2360 22 1 6.8596 -2.4157 11.6058 23 1 8.6995 -3.2453 10.2615 24 6 3.9525 -4.5432 6.5829 25 6 3.0378 -1.1198 3.1100 26 8 2.8055 -0.1707 2.1821 27 1 -0.3634 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 3.1301 1.4423 0.0005 31 1 1.6766 1.9563 -0.8899 32 1 1.6768 1.9563 0.8901 33 1 1.6765 -1.7489 -1.2493 34 1 1.6765 -0.2074 -2.1392 35 1 3.1299 -0.7217 -1.2491 36 1 2.7983 -4.3257 2.7893 37 1 1.3443 -3.8120 3.6782 38 1 1.9974 -5.7499 4.1034 39 1 2.1499 -7.7710 5.4980 40 1 3.4430 -7.7319 7.5906 41 1 6.9672 -5.4994 11.4664 42 1 4.4582 -3.6385 6.8866 43 1 3.6267 -1.0080 4.0085 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877885999.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:56 Heat of formation + Delta-G solvation = -46.625818 kcal Electronic energy + Delta-G solvation = -25278.998586 eV Core-core repulsion = 21484.223924 eV Total energy + Delta-G solvation = -3794.774662 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.50678 -41.25875 -39.88251 -37.95554 -37.43586 -36.00210 -34.29070 -32.17603 -30.84629 -30.23809 -28.40203 -28.23618 -27.78877 -27.35385 -24.38280 -23.56769 -23.19465 -22.13116 -20.61704 -19.84324 -19.52235 -18.17523 -17.91095 -17.40166 -16.84839 -16.83269 -16.74625 -16.16741 -16.06673 -15.63364 -15.50504 -15.10927 -14.96428 -14.68278 -14.53177 -14.14716 -13.60774 -13.58259 -13.33739 -13.24615 -13.11194 -12.84237 -12.64331 -12.64084 -12.55710 -12.32496 -12.18115 -12.10061 -12.05132 -11.97318 -11.67246 -11.63033 -11.37495 -10.81489 -9.86822 -9.41298 -8.99057 -8.49908 -6.18747 0.36945 0.55609 0.64992 1.34264 1.42278 1.45261 1.52432 1.65823 1.80037 2.16212 2.78671 2.95951 3.12464 3.47081 3.54974 3.77224 3.87268 3.94149 4.01056 4.09687 4.21741 4.23511 4.29492 4.43307 4.55086 4.58632 4.68236 4.72440 4.80111 4.82002 4.82622 4.92851 4.93775 4.94671 5.00764 5.07709 5.09772 5.27574 5.32266 5.36416 5.38263 5.59973 5.63779 5.88058 6.00342 6.43633 6.59891 6.94825 7.72038 8.72942 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.017051 B = 0.002584 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.741439 B =10831.537942 C =12274.219064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.029 3.971 3 C -0.145 4.145 4 C -0.136 4.136 5 C 0.202 3.798 6 N -0.489 5.489 7 C -0.037 4.037 8 C 0.150 3.850 9 O -0.326 6.326 10 C 0.171 3.829 11 C -0.274 4.274 12 C -0.027 4.027 13 C -0.233 4.233 14 C 0.150 3.850 15 O -0.222 6.222 16 C -0.415 4.415 17 H 0.100 0.900 18 C -0.019 4.019 19 N -0.917 5.917 20 Si 1.017 2.983 21 H -0.254 1.254 22 H -0.266 1.266 23 H -0.267 1.267 24 C -0.279 4.279 25 C -0.057 4.057 26 O -0.203 6.203 27 H 0.053 0.947 28 H 0.100 0.900 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.099 0.901 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.100 0.900 35 H 0.053 0.947 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.155 0.845 39 H 0.164 0.836 40 H 0.120 0.880 41 H 0.274 0.726 42 H 0.120 0.880 43 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.764 12.120 -24.144 29.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.028 3.972 3 C -0.202 4.202 4 C -0.194 4.194 5 C -0.006 4.006 6 N -0.219 5.219 7 C -0.155 4.155 8 C 0.075 3.925 9 O -0.240 6.240 10 C 0.126 3.874 11 C -0.293 4.293 12 C -0.045 4.045 13 C -0.253 4.253 14 C 0.098 3.902 15 O -0.128 6.128 16 C -0.491 4.491 17 H 0.117 0.883 18 C -0.217 4.217 19 N -0.554 5.554 20 Si 0.836 3.164 21 H -0.178 1.178 22 H -0.191 1.191 23 H -0.191 1.191 24 C -0.299 4.299 25 C -0.128 4.128 26 O -0.089 6.089 27 H 0.072 0.928 28 H 0.119 0.881 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.118 0.882 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.119 0.881 35 H 0.072 0.928 36 H 0.110 0.890 37 H 0.111 0.889 38 H 0.172 0.828 39 H 0.181 0.819 40 H 0.138 0.862 41 H 0.083 0.917 42 H 0.137 0.863 43 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -10.888 11.704 -24.105 28.924 hybrid contribution 1.085 0.573 1.350 1.824 sum -9.802 12.277 -22.756 27.652 Atomic orbital electron populations 1.21909 0.90630 1.03086 1.03753 1.19447 0.97196 0.95106 0.85441 1.21929 1.01606 0.92572 1.04091 1.21908 1.01157 1.00820 0.95492 1.27139 0.92057 0.88226 0.93170 1.70106 1.23953 1.14709 1.13106 1.21292 1.02115 0.97319 0.94780 1.20517 0.96663 0.92042 0.83317 1.85829 1.69376 1.34578 1.34222 1.18527 0.93959 0.85680 0.89273 1.21191 1.09818 0.93122 1.05121 1.20934 0.94060 0.98509 0.91017 1.20484 1.06920 0.96522 1.01339 1.19557 0.90944 0.93992 0.85661 1.83974 1.55415 1.40013 1.33375 1.21844 1.23637 0.91383 1.12238 0.88313 1.26561 0.97727 1.02766 0.94670 1.70179 1.38177 1.31638 1.15435 0.84554 0.77404 0.75413 0.79002 1.17755 1.19121 1.19144 1.20279 1.11422 1.00161 0.98013 1.25113 1.04700 0.86967 0.95979 1.84480 1.54752 1.40809 1.28891 0.92787 0.88095 0.92298 0.92365 0.88238 0.92350 0.92297 0.88095 0.92809 0.88982 0.88933 0.82794 0.81863 0.86152 0.91688 0.86273 0.75389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 8.46 71.98 0.61 -0.96 16 2 C 0.03 0.41 0.99 -52.93 -0.05 0.36 16 3 C -0.14 -1.53 8.02 71.98 0.58 -0.96 16 4 C -0.14 -1.57 8.46 71.98 0.61 -0.96 16 5 C 0.20 4.51 6.47 88.34 0.57 5.08 16 6 N -0.49 -12.64 11.29 -291.97 -3.30 -15.94 16 7 C -0.04 -0.99 7.09 41.26 0.29 -0.70 16 8 C 0.15 3.92 5.36 71.24 0.38 4.30 16 9 O -0.33 -10.77 9.43 -92.42 -0.87 -11.64 16 10 C 0.17 6.40 6.68 22.49 0.15 6.55 16 11 C -0.27 -8.64 9.04 22.40 0.20 -8.43 16 12 C -0.03 -0.89 10.03 22.24 0.22 -0.66 16 13 C -0.23 -9.82 9.99 22.41 0.22 -9.59 16 14 C 0.15 7.56 6.64 22.56 0.15 7.71 16 15 O -0.22 -13.43 9.76 -22.85 -0.22 -13.65 16 16 C -0.42 -24.49 9.49 67.92 0.64 -23.85 16 17 H 0.10 5.46 5.20 -2.91 -0.02 5.45 16 18 C -0.02 -1.10 5.49 84.83 0.47 -0.63 16 19 N -0.92 -56.22 13.67 21.61 0.30 -55.93 16 20 Si 1.02 43.34 29.55 68.60 2.03 45.37 16 21 H -0.25 -10.14 7.11 99.48 0.71 -9.44 16 22 H -0.27 -10.82 7.11 99.48 0.71 -10.12 16 23 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 24 C -0.28 -12.83 9.10 22.48 0.20 -12.63 16 25 C -0.06 -1.47 11.50 66.93 0.77 -0.71 16 26 O -0.20 -4.96 10.17 -3.69 -0.04 -5.00 16 27 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 28 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 30 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 33 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.10 0.59 8.14 -2.38 -0.02 0.57 16 35 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.09 2.19 7.67 -2.39 -0.02 2.17 16 37 H 0.09 2.19 7.65 -2.39 -0.02 2.17 16 38 H 0.15 3.66 6.29 -2.91 -0.02 3.64 16 39 H 0.16 3.80 8.06 -2.91 -0.02 3.77 16 40 H 0.12 4.93 8.06 -2.91 -0.02 4.90 16 41 H 0.27 15.31 8.31 -92.70 -0.77 14.54 16 42 H 0.12 5.73 5.64 -2.91 -0.02 5.72 16 43 H 0.23 5.32 7.86 -2.91 -0.02 5.29 16 Total: -1.00 -73.90 366.02 4.93 -68.96 By element: Atomic # 1 Polarization: 22.88 SS G_CDS: 1.02 Total: 23.90 kcal Atomic # 6 Polarization: -42.09 SS G_CDS: 6.02 Total: -36.07 kcal Atomic # 7 Polarization: -68.86 SS G_CDS: -3.00 Total: -71.87 kcal Atomic # 8 Polarization: -29.16 SS G_CDS: -1.13 Total: -30.29 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -73.90 4.93 -68.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877885999.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.339 kcal (2) G-P(sol) polarization free energy of solvation -73.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds