Wall clock time and date at job start Tue Mar 31 2020 11:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.35846 * 120.90596 * 2 1 4 4 C 1.41008 * 119.82717 * 179.97438 * 3 2 1 5 5 O 1.21794 * 119.15648 * 180.02562 * 4 3 2 6 6 O 1.34224 * 121.68474 * 359.71455 * 4 3 2 7 7 C 1.35029 * 121.46423 * 0.57568 * 6 4 3 8 8 C 1.38683 * 120.73566 * 179.71493 * 7 6 4 9 9 C 1.38516 * 119.78425 * 179.68151 * 8 7 6 10 10 O 1.35739 * 119.73010 * 179.97438 * 9 8 7 11 11 C 1.42899 * 117.00210 * 180.02562 * 10 9 8 12 12 C 1.53011 * 109.47056 * 180.02562 * 11 10 9 13 13 N 1.46891 * 109.47156 * 65.00107 * 12 11 10 14 14 C 1.46898 * 111.00146 * 179.97438 * 13 12 11 15 15 H 1.09008 * 109.46680 * 35.00627 * 14 13 12 16 16 C 1.53000 * 109.47438 * 275.00553 * 14 13 12 17 17 C 1.50700 * 109.47272 * 154.99981 * 14 13 12 18 18 H 1.07999 * 120.00072 * 359.97438 * 17 14 13 19 19 C 1.37874 * 120.00243 * 180.02562 * 17 14 13 20 20 N 1.31521 * 119.99935 * 0.02562 * 19 17 14 21 21 Si 1.86800 * 120.00314 * 179.97438 * 19 17 14 22 22 H 1.48496 * 109.47157 * 0.02562 * 21 19 17 23 23 H 1.48507 * 109.46750 * 119.99783 * 21 19 17 24 24 H 1.48492 * 109.47223 * 239.99889 * 21 19 17 25 25 C 1.39378 * 120.54187 * 0.04174 * 9 8 7 26 26 C 1.36456 * 120.42984 * 359.97438 * 25 9 8 27 27 C 1.39961 * 119.79740 * 359.97438 * 26 25 9 28 28 H 1.08998 * 109.47560 * 270.02631 * 1 2 3 29 29 H 1.09007 * 109.47132 * 30.02582 * 1 2 3 30 30 H 1.08996 * 109.47395 * 150.02135 * 1 2 3 31 31 H 1.08000 * 120.08776 * 359.95718 * 3 2 1 32 32 H 1.07991 * 120.10851 * 359.67931 * 8 7 6 33 33 H 1.08997 * 109.47330 * 299.99920 * 11 10 9 34 34 H 1.09002 * 109.47209 * 60.00744 * 11 10 9 35 35 H 1.08998 * 109.46514 * 185.00435 * 12 11 10 36 36 H 1.08998 * 109.46832 * 304.99656 * 12 11 10 37 37 H 1.00907 * 111.00111 * 56.04427 * 13 12 11 38 38 H 1.09006 * 109.46554 * 299.99458 * 16 14 13 39 39 H 1.08993 * 109.47188 * 59.99217 * 16 14 13 40 40 H 1.09000 * 109.46863 * 180.02562 * 16 14 13 41 41 H 0.96999 * 120.00015 * 180.02562 * 20 19 17 42 42 H 1.08004 * 119.78381 * 179.97438 * 25 9 8 43 43 H 1.08004 * 120.09999 * 179.97438 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2047 1.1656 0.0000 4 6 3.6145 1.1390 0.0005 5 8 4.2278 2.1913 0.0010 6 8 4.2979 -0.0162 0.0068 7 6 3.6655 -1.2092 0.0012 8 6 4.3867 -2.3938 0.0019 9 6 3.7177 -3.6067 0.0028 10 8 4.4247 -4.7654 0.0029 11 6 3.6758 -5.9824 0.0033 12 6 4.6371 -7.1728 0.0040 13 7 5.3999 -7.1855 1.2593 14 6 6.3349 -8.3179 1.2957 15 1 6.7195 -8.5039 0.2928 16 6 5.6067 -9.5646 1.8020 17 6 7.4798 -7.9944 2.2207 18 1 7.5101 -7.0427 2.7302 19 6 8.4892 -8.9131 2.4158 20 7 8.4532 -10.0716 1.7942 21 14 9.9087 -8.5119 3.5618 22 1 9.7153 -7.1550 4.1332 23 1 9.9546 -9.5094 4.6610 24 1 11.1844 -8.5527 2.8028 25 6 2.3245 -3.6471 0.0022 26 6 1.5995 -2.4911 0.0013 27 6 2.2590 -1.2565 0.0014 28 1 -0.3634 0.0005 1.0276 29 1 -0.3634 0.8898 -0.5143 30 1 -0.3634 -0.8901 -0.5135 31 1 1.6810 2.1101 -0.0007 32 1 5.4664 -2.3706 0.0016 33 1 3.0480 -6.0224 0.8934 34 1 3.0477 -6.0228 -0.8866 35 1 4.0688 -8.0986 -0.0854 36 1 5.3240 -7.0855 -0.8378 37 1 4.7826 -7.2008 2.0574 38 1 5.2222 -9.3785 2.8049 39 1 4.7786 -9.7985 1.1330 40 1 6.3007 -10.4047 1.8295 41 1 9.1631 -10.7181 1.9317 42 1 1.8155 -4.5996 0.0025 43 1 0.5202 -2.5286 0.0004 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878817231.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:09 Heat of formation + Delta-G solvation = -67.632906 kcal Electronic energy + Delta-G solvation = -25248.751489 eV Core-core repulsion = 21453.065891 eV Total energy + Delta-G solvation = -3795.685598 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.09372 -40.12984 -38.32314 -37.18532 -36.17822 -35.27382 -32.80466 -31.33913 -30.24443 -29.33330 -29.05978 -26.81531 -25.17114 -24.46198 -23.62783 -22.51760 -21.66474 -20.29779 -19.78531 -18.53816 -17.71652 -17.03825 -16.94585 -16.40621 -15.98907 -15.62999 -15.28465 -14.73352 -14.60225 -14.34633 -14.09969 -14.04553 -13.86221 -13.64209 -13.38242 -13.10438 -12.93792 -12.90818 -12.27112 -12.07831 -12.03084 -11.75068 -11.64592 -11.28258 -10.99888 -10.90535 -10.78702 -10.49952 -10.43931 -10.19083 -10.04125 -9.86311 -9.09389 -9.03819 -8.38364 -8.25116 -7.31897 -6.00619 -4.03435 0.00073 0.77430 1.31213 2.09415 2.61097 3.17938 3.31767 3.39757 3.42216 3.45860 3.89121 3.92719 4.05900 4.41211 4.43209 4.55331 4.77149 4.86305 4.88015 4.95371 4.97791 5.06360 5.21044 5.24077 5.31533 5.36681 5.47559 5.55432 5.61506 5.79057 5.84224 5.91226 5.93369 6.10748 6.17442 6.60350 6.75652 6.99460 7.01053 7.18586 7.29936 7.31243 7.67821 7.85586 8.21863 8.44972 8.55681 9.04349 9.62222 11.06611 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.018645 B = 0.002435 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.381400 B =11497.929543 C =12691.194609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.047 3.953 3 C -0.277 4.277 4 C 0.513 3.487 5 O -0.472 6.472 6 O -0.270 6.270 7 C 0.192 3.808 8 C -0.180 4.180 9 C 0.203 3.797 10 O -0.276 6.276 11 C 0.062 3.938 12 C 0.057 3.943 13 N -0.678 5.678 14 C 0.210 3.790 15 H 0.034 0.966 16 C -0.170 4.170 17 C -0.493 4.493 18 H 0.064 0.936 19 C 0.054 3.946 20 N -0.899 5.899 21 Si 0.897 3.103 22 H -0.272 1.272 23 H -0.286 1.286 24 H -0.285 1.285 25 C -0.231 4.231 26 C -0.014 4.014 27 C -0.207 4.207 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.159 0.841 32 H 0.155 0.845 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.045 0.955 36 H 0.079 0.921 37 H 0.324 0.676 38 H 0.028 0.972 39 H 0.004 0.996 40 H 0.090 0.910 41 H 0.259 0.741 42 H 0.141 0.859 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.826 14.247 -5.629 25.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.046 3.954 3 C -0.297 4.297 4 C 0.363 3.637 5 O -0.361 6.361 6 O -0.182 6.182 7 C 0.147 3.853 8 C -0.199 4.199 9 C 0.154 3.846 10 O -0.186 6.186 11 C -0.013 4.013 12 C -0.073 4.073 13 N -0.308 5.308 14 C 0.103 3.897 15 H 0.052 0.948 16 C -0.229 4.229 17 C -0.532 4.532 18 H 0.082 0.918 19 C -0.146 4.146 20 N -0.539 5.539 21 Si 0.725 3.275 22 H -0.197 1.197 23 H -0.212 1.212 24 H -0.211 1.211 25 C -0.250 4.250 26 C -0.032 4.032 27 C -0.208 4.208 28 H 0.109 0.891 29 H 0.101 0.899 30 H 0.099 0.901 31 H 0.177 0.823 32 H 0.172 0.828 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.062 0.938 36 H 0.097 0.903 37 H 0.141 0.859 38 H 0.047 0.953 39 H 0.023 0.977 40 H 0.109 0.891 41 H 0.069 0.931 42 H 0.158 0.842 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -19.515 14.999 -5.879 25.305 hybrid contribution -0.154 -0.767 0.768 1.096 sum -19.668 14.232 -5.111 24.810 Atomic orbital electron populations 1.21011 0.89244 1.04281 1.03899 1.21481 0.96694 0.91054 0.86169 1.22266 0.92872 1.00225 1.14290 1.19163 0.88188 0.81119 0.75254 1.90974 1.72135 1.25710 1.47308 1.83560 1.43437 1.13689 1.77470 1.18538 0.89292 0.83064 0.94444 1.19547 1.01850 0.86724 1.11780 1.18929 0.89803 0.86797 0.89057 1.86327 1.35069 1.11807 1.85441 1.23170 0.94860 0.82445 1.00845 1.21986 0.95779 0.92559 0.96962 1.60820 1.19944 1.48967 1.01080 1.19200 0.89528 0.83638 0.97335 0.94772 1.22451 0.98617 1.04393 0.97459 1.21189 1.04777 1.01579 1.25634 0.91809 1.24954 0.98272 0.95058 0.96331 1.69887 1.33517 1.07151 1.43339 0.86448 0.82136 0.78391 0.80492 1.19666 1.21239 1.21111 1.21120 0.92903 1.00143 1.10787 1.20634 1.00001 0.89836 0.92753 1.18838 0.91597 0.94375 1.15949 0.89123 0.89904 0.90076 0.82326 0.82755 0.91785 0.91737 0.93758 0.90283 0.85933 0.95289 0.97703 0.89139 0.93123 0.84156 0.84222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.49 9.64 36.00 0.35 -0.14 16 2 C 0.05 0.37 6.08 -102.18 -0.62 -0.26 16 3 C -0.28 -2.62 9.62 -39.39 -0.38 -3.00 16 4 C 0.51 6.86 7.89 31.78 0.25 7.11 16 5 O -0.47 -7.75 17.91 -19.60 -0.35 -8.10 16 6 O -0.27 -3.75 9.82 -20.81 -0.20 -3.95 16 7 C 0.19 2.33 6.76 -38.48 -0.26 2.07 16 8 C -0.18 -2.26 9.94 -39.31 -0.39 -2.66 16 9 C 0.20 2.44 6.69 -39.05 -0.26 2.17 16 10 O -0.28 -3.91 10.07 -18.92 -0.19 -4.10 16 11 C 0.06 0.73 5.01 37.16 0.19 0.92 16 12 C 0.06 0.89 5.87 -3.82 -0.02 0.87 16 13 N -0.68 -13.52 6.18 -107.95 -0.67 -14.19 16 14 C 0.21 5.10 2.57 -68.87 -0.18 4.92 16 15 H 0.03 0.91 7.80 -51.92 -0.41 0.51 16 16 C -0.17 -3.89 8.94 37.16 0.33 -3.56 16 17 C -0.49 -13.50 8.84 -34.44 -0.30 -13.80 16 18 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 19 C 0.05 1.49 5.30 -17.82 -0.09 1.40 16 20 N -0.90 -25.43 11.32 55.43 0.63 -24.80 16 21 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 22 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 24 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 25 C -0.23 -2.07 8.96 -39.80 -0.36 -2.43 16 26 C -0.01 -0.11 9.36 -39.58 -0.37 -0.48 16 27 C -0.21 -1.97 5.87 -105.01 -0.62 -2.59 16 28 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.08 0.23 8.10 -51.92 -0.42 -0.19 16 30 H 0.08 0.21 6.62 -51.93 -0.34 -0.13 16 31 H 0.16 1.16 8.06 -52.49 -0.42 0.74 16 32 H 0.15 1.98 8.06 -52.49 -0.42 1.56 16 33 H 0.06 0.66 7.64 -51.93 -0.40 0.27 16 34 H 0.06 0.57 7.64 -51.93 -0.40 0.18 16 35 H 0.04 0.64 7.44 -51.93 -0.39 0.26 16 36 H 0.08 1.32 8.06 -51.93 -0.42 0.90 16 37 H 0.32 6.04 8.47 -39.29 -0.33 5.71 16 38 H 0.03 0.63 8.13 -51.93 -0.42 0.21 16 39 H 0.00 0.08 7.45 -51.93 -0.39 -0.31 16 40 H 0.09 2.33 6.07 -51.93 -0.32 2.02 16 41 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 42 H 0.14 0.96 6.25 -52.48 -0.33 0.64 16 43 H 0.14 0.59 6.52 -52.48 -0.34 0.25 16 LS Contribution 360.05 15.07 5.43 5.43 Total: -1.00 -32.29 360.05 -8.83 -41.12 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -5.71 Total: 1.56 kcal Atomic # 6 Polarization: -6.71 SS G_CDS: -2.74 Total: -9.45 kcal Atomic # 7 Polarization: -38.95 SS G_CDS: -0.04 Total: -38.99 kcal Atomic # 8 Polarization: -15.40 SS G_CDS: -0.75 Total: -16.15 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.29 -8.83 -41.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878817231.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.517 kcal (2) G-P(sol) polarization free energy of solvation -32.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds