Wall clock time and date at job start Tue Mar 31 2020 11:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.35846 * 120.90596 * 2 1 4 4 C 1.41008 * 119.82717 * 179.97438 * 3 2 1 5 5 O 1.21794 * 119.15648 * 180.02562 * 4 3 2 6 6 O 1.34224 * 121.68474 * 359.71455 * 4 3 2 7 7 C 1.35029 * 121.46423 * 0.57568 * 6 4 3 8 8 C 1.38683 * 120.73566 * 179.71493 * 7 6 4 9 9 C 1.38516 * 119.78425 * 179.68151 * 8 7 6 10 10 O 1.35739 * 119.73010 * 179.97438 * 9 8 7 11 11 C 1.42899 * 117.00210 * 180.02562 * 10 9 8 12 12 C 1.53011 * 109.47056 * 180.02562 * 11 10 9 13 13 N 1.46891 * 109.47156 * 65.00107 * 12 11 10 14 14 C 1.46898 * 111.00146 * 179.97438 * 13 12 11 15 15 H 1.09008 * 109.46680 * 35.00627 * 14 13 12 16 16 C 1.53000 * 109.47438 * 275.00553 * 14 13 12 17 17 C 1.50700 * 109.47272 * 154.99981 * 14 13 12 18 18 H 1.07999 * 120.00072 * 359.97438 * 17 14 13 19 19 C 1.37874 * 120.00243 * 180.02562 * 17 14 13 20 20 N 1.31521 * 119.99935 * 0.02562 * 19 17 14 21 21 Si 1.86800 * 120.00314 * 179.97438 * 19 17 14 22 22 H 1.48496 * 109.47157 * 0.02562 * 21 19 17 23 23 H 1.48507 * 109.46750 * 119.99783 * 21 19 17 24 24 H 1.48492 * 109.47223 * 239.99889 * 21 19 17 25 25 C 1.39378 * 120.54187 * 0.04174 * 9 8 7 26 26 C 1.36456 * 120.42984 * 359.97438 * 25 9 8 27 27 C 1.39961 * 119.79740 * 359.97438 * 26 25 9 28 28 H 1.08998 * 109.47560 * 270.02631 * 1 2 3 29 29 H 1.09007 * 109.47132 * 30.02582 * 1 2 3 30 30 H 1.08996 * 109.47395 * 150.02135 * 1 2 3 31 31 H 1.08000 * 120.08776 * 359.95718 * 3 2 1 32 32 H 1.07991 * 120.10851 * 359.67931 * 8 7 6 33 33 H 1.08997 * 109.47330 * 299.99920 * 11 10 9 34 34 H 1.09002 * 109.47209 * 60.00744 * 11 10 9 35 35 H 1.08998 * 109.46514 * 185.00435 * 12 11 10 36 36 H 1.08998 * 109.46832 * 304.99656 * 12 11 10 37 37 H 1.00907 * 111.00111 * 56.04427 * 13 12 11 38 38 H 1.09006 * 109.46554 * 299.99458 * 16 14 13 39 39 H 1.08993 * 109.47188 * 59.99217 * 16 14 13 40 40 H 1.09000 * 109.46863 * 180.02562 * 16 14 13 41 41 H 0.96999 * 120.00015 * 180.02562 * 20 19 17 42 42 H 1.08004 * 119.78381 * 179.97438 * 25 9 8 43 43 H 1.08004 * 120.09999 * 179.97438 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2047 1.1656 0.0000 4 6 3.6145 1.1390 0.0005 5 8 4.2278 2.1913 0.0010 6 8 4.2979 -0.0162 0.0068 7 6 3.6655 -1.2092 0.0012 8 6 4.3867 -2.3938 0.0019 9 6 3.7177 -3.6067 0.0028 10 8 4.4247 -4.7654 0.0029 11 6 3.6758 -5.9824 0.0033 12 6 4.6371 -7.1728 0.0040 13 7 5.3999 -7.1855 1.2593 14 6 6.3349 -8.3179 1.2957 15 1 6.7195 -8.5039 0.2928 16 6 5.6067 -9.5646 1.8020 17 6 7.4798 -7.9944 2.2207 18 1 7.5101 -7.0427 2.7302 19 6 8.4892 -8.9131 2.4158 20 7 8.4532 -10.0716 1.7942 21 14 9.9087 -8.5119 3.5618 22 1 9.7153 -7.1550 4.1332 23 1 9.9546 -9.5094 4.6610 24 1 11.1844 -8.5527 2.8028 25 6 2.3245 -3.6471 0.0022 26 6 1.5995 -2.4911 0.0013 27 6 2.2590 -1.2565 0.0014 28 1 -0.3634 0.0005 1.0276 29 1 -0.3634 0.8898 -0.5143 30 1 -0.3634 -0.8901 -0.5135 31 1 1.6810 2.1101 -0.0007 32 1 5.4664 -2.3706 0.0016 33 1 3.0480 -6.0224 0.8934 34 1 3.0477 -6.0228 -0.8866 35 1 4.0688 -8.0986 -0.0854 36 1 5.3240 -7.0855 -0.8378 37 1 4.7826 -7.2008 2.0574 38 1 5.2222 -9.3785 2.8049 39 1 4.7786 -9.7985 1.1330 40 1 6.3007 -10.4047 1.8295 41 1 9.1631 -10.7181 1.9317 42 1 1.8155 -4.5996 0.0025 43 1 0.5202 -2.5286 0.0004 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878817231.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:08 Heat of formation + Delta-G solvation = -87.927706 kcal Electronic energy + Delta-G solvation = -25249.631537 eV Core-core repulsion = 21453.065891 eV Total energy + Delta-G solvation = -3796.565646 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.99826 -41.04625 -39.32738 -38.17379 -37.64026 -36.10997 -34.62743 -32.30219 -31.58937 -30.20392 -29.65217 -28.22131 -27.21323 -25.43610 -24.38562 -23.51031 -22.61966 -22.14914 -20.65798 -19.28702 -18.69159 -18.32850 -17.94636 -17.93806 -17.08321 -16.77454 -16.54276 -16.06508 -15.80077 -15.19694 -15.06779 -14.98871 -14.73945 -14.60551 -14.46518 -14.30165 -13.93367 -13.69704 -13.59543 -13.38998 -13.17218 -12.86094 -12.73677 -12.67891 -12.55931 -12.41331 -12.17707 -12.08309 -11.88349 -11.66292 -11.40621 -11.01196 -10.73366 -10.49011 -9.93650 -9.08723 -8.91579 -8.10643 -6.20690 -0.75691 -0.05138 0.51320 1.18447 1.39692 1.42473 1.54325 1.75834 2.27374 2.43295 2.63158 3.13611 3.17855 3.30046 3.38997 3.59737 3.72929 3.90180 4.00542 4.18360 4.20850 4.30009 4.41777 4.44802 4.59531 4.68929 4.74250 4.75020 4.81628 4.86678 4.89324 4.95310 4.98791 5.10595 5.13051 5.23933 5.30956 5.40049 5.44997 5.71042 5.83438 6.07402 6.28049 6.34875 6.38515 6.65149 6.86790 6.96502 7.49437 8.94677 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.018645 B = 0.002435 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.381400 B =11497.929543 C =12691.194609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.076 3.924 3 C -0.297 4.297 4 C 0.502 3.498 5 O -0.524 6.524 6 O -0.297 6.297 7 C 0.168 3.832 8 C -0.207 4.207 9 C 0.191 3.809 10 O -0.312 6.312 11 C 0.066 3.934 12 C 0.055 3.945 13 N -0.689 5.689 14 C 0.215 3.785 15 H 0.001 0.999 16 C -0.156 4.156 17 C -0.513 4.513 18 H 0.049 0.951 19 C 0.009 3.991 20 N -0.921 5.921 21 Si 0.955 3.045 22 H -0.273 1.273 23 H -0.278 1.278 24 H -0.283 1.283 25 C -0.222 4.222 26 C 0.007 3.993 27 C -0.210 4.210 28 H 0.111 0.889 29 H 0.098 0.902 30 H 0.105 0.895 31 H 0.180 0.820 32 H 0.131 0.869 33 H 0.086 0.914 34 H 0.104 0.896 35 H 0.063 0.937 36 H 0.058 0.942 37 H 0.333 0.667 38 H 0.033 0.967 39 H 0.033 0.967 40 H 0.059 0.941 41 H 0.261 0.739 42 H 0.173 0.827 43 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.255 13.857 -5.443 29.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.075 3.925 3 C -0.316 4.316 4 C 0.356 3.644 5 O -0.417 6.417 6 O -0.209 6.209 7 C 0.123 3.877 8 C -0.227 4.227 9 C 0.143 3.857 10 O -0.224 6.224 11 C -0.008 4.008 12 C -0.075 4.075 13 N -0.320 5.320 14 C 0.107 3.893 15 H 0.019 0.981 16 C -0.216 4.216 17 C -0.552 4.552 18 H 0.068 0.932 19 C -0.189 4.189 20 N -0.562 5.562 21 Si 0.782 3.218 22 H -0.197 1.197 23 H -0.203 1.203 24 H -0.209 1.209 25 C -0.240 4.240 26 C -0.011 4.011 27 C -0.211 4.211 28 H 0.129 0.871 29 H 0.116 0.884 30 H 0.123 0.877 31 H 0.197 0.803 32 H 0.149 0.851 33 H 0.104 0.896 34 H 0.122 0.878 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.151 0.849 38 H 0.052 0.948 39 H 0.052 0.948 40 H 0.078 0.922 41 H 0.070 0.930 42 H 0.190 0.810 43 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -23.974 14.595 -5.697 28.640 hybrid contribution 1.176 -0.708 0.666 1.526 sum -22.798 13.887 -5.031 27.164 Atomic orbital electron populations 1.21233 0.85247 1.06311 1.05604 1.21925 0.98940 0.89214 0.82468 1.22300 0.90520 1.02162 1.16659 1.19864 0.89723 0.80306 0.74499 1.90924 1.73277 1.27144 1.50403 1.83463 1.45162 1.14674 1.77626 1.18799 0.90891 0.82018 0.95944 1.19538 1.01196 0.88045 1.13897 1.19055 0.91258 0.85489 0.89900 1.86262 1.36953 1.13001 1.86159 1.23209 0.93758 0.80114 1.03746 1.22047 0.95944 0.95540 0.93929 1.60614 1.20908 1.47070 1.03412 1.18927 0.90073 0.85685 0.94661 0.98077 1.22231 0.98609 1.02357 0.98363 1.21501 1.06451 1.01035 1.26220 0.93222 1.25664 1.00495 0.95028 0.97711 1.70000 1.34178 1.07744 1.44264 0.85542 0.79259 0.78155 0.78863 1.19713 1.20327 1.20904 1.21466 0.91145 1.02180 1.09249 1.21181 1.02214 0.87993 0.89669 1.19219 0.90356 0.96436 1.15097 0.87093 0.88358 0.87661 0.80311 0.85131 0.89584 0.87841 0.91951 0.92370 0.84943 0.94797 0.94803 0.92203 0.93026 0.80961 0.79158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.23 9.64 71.23 0.69 0.46 16 2 C 0.08 0.93 6.08 -18.28 -0.11 0.82 16 3 C -0.30 -5.37 9.62 22.39 0.22 -5.15 16 4 C 0.50 14.34 7.89 68.50 0.54 14.88 16 5 O -0.52 -18.71 17.91 18.97 0.34 -18.37 16 6 O -0.30 -9.01 9.82 14.62 0.14 -8.87 16 7 C 0.17 4.20 6.76 22.98 0.16 4.36 16 8 C -0.21 -5.55 9.94 22.44 0.22 -5.33 16 9 C 0.19 4.39 6.69 22.61 0.15 4.54 16 10 O -0.31 -8.65 10.07 -90.62 -0.91 -9.56 16 11 C 0.07 1.37 5.01 71.99 0.36 1.73 16 12 C 0.05 1.64 5.87 86.31 0.51 2.15 16 13 N -0.69 -27.34 6.18 -495.45 -3.06 -30.40 16 14 C 0.22 10.58 2.57 44.17 0.11 10.70 16 15 H 0.00 0.07 7.80 -2.38 -0.02 0.05 16 16 C -0.16 -7.08 8.94 71.98 0.64 -6.44 16 17 C -0.51 -28.70 8.84 25.60 0.23 -28.48 16 18 H 0.05 2.85 7.81 -2.91 -0.02 2.82 16 19 C 0.01 0.50 5.30 84.65 0.45 0.95 16 20 N -0.92 -52.96 11.32 21.45 0.24 -52.72 16 21 Si 0.96 44.72 29.54 68.60 2.03 46.74 16 22 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 23 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 24 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 25 C -0.22 -3.03 8.96 22.13 0.20 -2.83 16 26 C 0.01 0.07 9.36 22.27 0.21 0.28 16 27 C -0.21 -3.47 5.87 -20.12 -0.12 -3.59 16 28 H 0.11 -0.07 8.14 -2.39 -0.02 -0.09 16 29 H 0.10 0.00 8.10 -2.38 -0.02 -0.02 16 30 H 0.10 -0.24 6.62 -2.39 -0.02 -0.26 16 31 H 0.18 2.36 8.06 -2.91 -0.02 2.34 16 32 H 0.13 3.90 8.06 -2.92 -0.02 3.88 16 33 H 0.09 1.41 7.64 -2.39 -0.02 1.40 16 34 H 0.10 1.36 7.64 -2.39 -0.02 1.34 16 35 H 0.06 1.65 7.44 -2.39 -0.02 1.63 16 36 H 0.06 1.96 8.06 -2.39 -0.02 1.94 16 37 H 0.33 12.04 8.47 -89.69 -0.76 11.28 16 38 H 0.03 1.46 8.13 -2.38 -0.02 1.44 16 39 H 0.03 1.29 7.45 -2.39 -0.02 1.27 16 40 H 0.06 3.10 6.07 -2.39 -0.01 3.09 16 41 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 42 H 0.17 1.26 6.25 -2.91 -0.02 1.24 16 43 H 0.19 0.04 6.52 -2.91 -0.02 0.03 16 Total: -1.00 -76.95 360.05 3.51 -73.43 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: 0.29 Total: 10.71 kcal Atomic # 6 Polarization: -15.41 SS G_CDS: 4.45 Total: -10.97 kcal Atomic # 7 Polarization: -80.30 SS G_CDS: -2.82 Total: -83.12 kcal Atomic # 8 Polarization: -36.37 SS G_CDS: -0.43 Total: -36.80 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.74 kcal Total: -76.95 3.51 -73.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878817231.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.493 kcal (2) G-P(sol) polarization free energy of solvation -76.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds