Wall clock time and date at job start Tue Mar 31 2020 11:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35841 * 120.90357 * 2 1 4 4 C 1.41000 * 119.82573 * 180.02562 * 3 2 1 5 5 O 1.21798 * 119.15702 * 180.02562 * 4 3 2 6 6 O 1.34223 * 121.68717 * 0.02562 * 4 3 2 7 7 C 1.35024 * 121.46684 * 359.97438 * 6 4 3 8 8 C 1.38680 * 120.74092 * 180.32091 * 7 6 4 9 9 C 1.38510 * 119.78666 * 180.20761 * 8 7 6 10 10 O 1.35749 * 119.72852 * 179.76822 * 9 8 7 11 11 C 1.42905 * 116.99982 * 179.72270 * 10 9 8 12 12 C 1.52999 * 109.46728 * 180.02562 * 11 10 9 13 13 N 1.46897 * 109.47150 * 65.00694 * 12 11 10 14 14 C 1.46904 * 111.00309 * 179.97438 * 13 12 11 15 15 H 1.09001 * 109.46483 * 324.99541 * 14 13 12 16 16 C 1.53004 * 109.47224 * 84.99331 * 14 13 12 17 17 C 1.50700 * 109.47153 * 204.99750 * 14 13 12 18 18 H 1.07999 * 120.00099 * 359.97438 * 17 14 13 19 19 C 1.37881 * 119.99718 * 179.97438 * 17 14 13 20 20 N 1.31509 * 119.99971 * 179.97438 * 19 17 14 21 21 Si 1.86800 * 119.99905 * 359.97438 * 19 17 14 22 22 H 1.48501 * 109.47135 * 90.00432 * 21 19 17 23 23 H 1.48511 * 109.47016 * 210.00052 * 21 19 17 24 24 H 1.48498 * 109.47202 * 329.99580 * 21 19 17 25 25 C 1.39368 * 120.54600 * 359.49396 * 9 8 7 26 26 C 1.36462 * 120.42646 * 0.23018 * 25 9 8 27 27 C 1.39969 * 119.79554 * 0.02562 * 26 25 9 28 28 H 1.09001 * 109.47243 * 269.99769 * 1 2 3 29 29 H 1.09000 * 109.47255 * 29.99948 * 1 2 3 30 30 H 1.09001 * 109.47268 * 149.99899 * 1 2 3 31 31 H 1.07999 * 120.08781 * 359.97438 * 3 2 1 32 32 H 1.07999 * 120.10547 * 359.97285 * 8 7 6 33 33 H 1.09000 * 109.47187 * 300.00263 * 11 10 9 34 34 H 1.09001 * 109.46558 * 60.00311 * 11 10 9 35 35 H 1.09000 * 109.46738 * 185.00163 * 12 11 10 36 36 H 1.08994 * 109.47465 * 305.00250 * 12 11 10 37 37 H 1.00901 * 110.99808 * 303.94335 * 13 12 11 38 38 H 1.09001 * 109.46879 * 60.00236 * 16 14 13 39 39 H 1.08997 * 109.46957 * 180.02562 * 16 14 13 40 40 H 1.08995 * 109.47061 * 300.00298 * 16 14 13 41 41 H 0.96996 * 120.00657 * 179.97438 * 20 19 17 42 42 H 1.08002 * 119.79051 * 180.25905 * 25 9 8 43 43 H 1.08008 * 120.10066 * 180.02562 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2047 1.1656 0.0000 4 6 3.6144 1.1390 -0.0005 5 8 4.2277 2.1913 -0.0001 6 8 4.2978 -0.0162 -0.0016 7 6 3.6655 -1.2092 -0.0016 8 6 4.3867 -2.3937 0.0040 9 6 3.7178 -3.6066 -0.0006 10 8 4.4250 -4.7653 0.0002 11 6 3.6760 -5.9824 0.0015 12 6 4.6374 -7.1727 0.0028 13 7 5.4003 -7.1846 1.2581 14 6 6.3354 -8.3169 1.2951 15 1 5.8883 -9.1739 0.7914 16 6 7.6344 -7.9290 0.5857 17 6 6.6334 -8.6756 2.7282 18 1 6.1743 -8.1180 3.5311 19 6 7.4921 -9.7158 3.0142 20 7 7.7525 -10.0286 4.2647 21 14 8.2855 -10.6807 1.6253 22 1 9.5757 -10.0455 1.2553 23 1 8.5303 -12.0766 2.0693 24 1 7.3811 -10.6874 0.4475 25 6 2.3247 -3.6472 -0.0001 26 6 1.5997 -2.4911 0.0001 27 6 2.2591 -1.2565 -0.0007 28 1 -0.3634 0.0000 1.0277 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3634 -0.8900 -0.5138 31 1 1.6809 2.1101 -0.0004 32 1 5.4665 -2.3705 0.0080 33 1 3.0483 -6.0218 0.8917 34 1 3.0477 -6.0233 -0.8883 35 1 4.0692 -8.0986 -0.0858 36 1 5.3242 -7.0859 -0.8390 37 1 5.8851 -6.3103 1.3948 38 1 8.0815 -7.0719 1.0894 39 1 8.3281 -8.7693 0.6129 40 1 7.4189 -7.6696 -0.4507 41 1 8.3563 -10.7605 4.4660 42 1 1.8157 -4.5997 0.0006 43 1 0.5202 -2.5287 0.0009 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878817232.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:13 Heat of formation + Delta-G solvation = -60.789745 kcal Electronic energy + Delta-G solvation = -25317.368303 eV Core-core repulsion = 21521.979447 eV Total energy + Delta-G solvation = -3795.388856 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.16748 -40.25746 -38.42520 -37.27503 -36.38960 -35.37155 -32.75800 -31.47463 -30.70229 -29.46515 -29.19399 -27.33620 -25.12863 -24.56406 -23.71739 -22.60614 -21.75451 -20.35309 -19.79952 -18.60781 -17.75220 -17.17472 -17.01896 -16.74554 -16.19365 -15.78981 -15.36081 -14.93094 -14.57250 -14.44058 -14.39724 -14.12374 -14.06733 -13.77217 -13.45004 -13.32998 -13.00245 -12.82664 -12.44440 -12.36766 -12.12658 -12.01512 -11.93263 -11.55532 -11.37725 -11.20882 -10.94005 -10.55985 -10.43795 -10.15487 -10.10459 -9.53557 -9.20332 -9.17622 -8.59869 -8.34923 -7.54362 -6.07131 -4.04974 -0.06793 0.69806 1.23381 2.00868 2.54414 3.04955 3.23556 3.31835 3.34521 3.35826 3.82232 3.87326 3.99925 4.34591 4.37472 4.49249 4.68142 4.72655 4.81721 4.89485 4.94072 5.01636 5.19311 5.22335 5.22827 5.30826 5.39951 5.45878 5.50384 5.71082 5.72839 5.83924 5.86554 5.95545 6.04439 6.17019 6.26732 6.47330 6.68095 6.92300 7.04051 7.08086 7.24024 7.65093 7.82364 8.24030 8.65113 9.03978 9.55019 11.06409 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.024704 B = 0.002298 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.124720 B =12181.481645 C =12678.014428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.047 3.953 3 C -0.276 4.276 4 C 0.513 3.487 5 O -0.471 6.471 6 O -0.270 6.270 7 C 0.191 3.809 8 C -0.181 4.181 9 C 0.204 3.796 10 O -0.299 6.299 11 C 0.058 3.942 12 C 0.057 3.943 13 N -0.672 5.672 14 C 0.183 3.817 15 H 0.033 0.967 16 C -0.183 4.183 17 C -0.500 4.500 18 H 0.082 0.918 19 C 0.067 3.933 20 N -0.900 5.900 21 Si 0.887 3.113 22 H -0.280 1.280 23 H -0.297 1.297 24 H -0.270 1.270 25 C -0.226 4.226 26 C -0.014 4.014 27 C -0.203 4.203 28 H 0.091 0.909 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.160 0.840 32 H 0.153 0.847 33 H 0.079 0.921 34 H 0.066 0.934 35 H 0.090 0.910 36 H 0.032 0.968 37 H 0.339 0.661 38 H 0.055 0.945 39 H 0.045 0.955 40 H 0.026 0.974 41 H 0.264 0.736 42 H 0.143 0.857 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.703 16.585 -12.548 27.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.046 3.954 3 C -0.295 4.295 4 C 0.363 3.637 5 O -0.360 6.360 6 O -0.182 6.182 7 C 0.146 3.854 8 C -0.200 4.200 9 C 0.155 3.845 10 O -0.210 6.210 11 C -0.016 4.016 12 C -0.073 4.073 13 N -0.303 5.303 14 C 0.074 3.926 15 H 0.051 0.949 16 C -0.242 4.242 17 C -0.538 4.538 18 H 0.100 0.900 19 C -0.134 4.134 20 N -0.539 5.539 21 Si 0.718 3.282 22 H -0.208 1.208 23 H -0.224 1.224 24 H -0.195 1.195 25 C -0.245 4.245 26 C -0.032 4.032 27 C -0.204 4.204 28 H 0.110 0.890 29 H 0.101 0.899 30 H 0.100 0.900 31 H 0.177 0.823 32 H 0.171 0.829 33 H 0.098 0.902 34 H 0.084 0.916 35 H 0.108 0.892 36 H 0.050 0.950 37 H 0.157 0.843 38 H 0.074 0.926 39 H 0.064 0.936 40 H 0.045 0.955 41 H 0.074 0.926 42 H 0.161 0.839 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -17.391 16.590 -12.072 26.896 hybrid contribution 1.016 -0.363 -1.306 1.694 sum -16.375 16.227 -13.377 26.653 Atomic orbital electron populations 1.21021 0.89154 1.04321 1.03987 1.21490 0.96764 0.91004 0.86182 1.22277 0.92845 1.00278 1.14097 1.19167 0.88199 0.81089 0.75267 1.90979 1.72118 1.25672 1.47238 1.83553 1.43461 1.13689 1.77505 1.18516 0.89315 0.83076 0.94497 1.19513 1.01684 0.86782 1.11988 1.18799 0.89840 0.86233 0.89586 1.86114 1.36249 1.12532 1.86133 1.23244 0.95347 0.81251 1.01801 1.22044 0.96399 0.95155 0.93705 1.60697 1.31386 1.07306 1.30876 1.19650 0.86580 0.89106 0.97299 0.94869 1.22852 1.01773 1.01371 0.98160 1.20966 1.26402 1.15893 0.90535 0.90031 1.24949 0.96335 0.96909 0.95247 1.69876 1.36599 1.29855 1.17563 0.86885 0.79953 0.78705 0.82698 1.20754 1.22420 1.19540 1.21137 0.92814 1.00314 1.10224 1.20667 1.00143 0.89776 0.92588 1.18867 0.91596 0.94443 1.15520 0.89035 0.89864 0.90042 0.82251 0.82914 0.90250 0.91572 0.89162 0.94965 0.84337 0.92602 0.93640 0.95472 0.92646 0.83899 0.84058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.45 9.64 36.00 0.35 -0.10 16 2 C 0.05 0.34 6.08 -102.18 -0.62 -0.28 16 3 C -0.28 -2.47 9.62 -39.39 -0.38 -2.85 16 4 C 0.51 6.54 7.89 31.78 0.25 6.79 16 5 O -0.47 -7.45 17.91 -19.60 -0.35 -7.81 16 6 O -0.27 -3.53 9.82 -20.80 -0.20 -3.74 16 7 C 0.19 2.16 6.76 -38.48 -0.26 1.90 16 8 C -0.18 -2.05 9.94 -39.32 -0.39 -2.44 16 9 C 0.20 2.22 6.69 -39.06 -0.26 1.95 16 10 O -0.30 -3.71 9.64 -18.96 -0.18 -3.89 16 11 C 0.06 0.64 5.07 37.16 0.19 0.83 16 12 C 0.06 0.82 5.90 -3.83 -0.02 0.80 16 13 N -0.67 -12.81 6.23 -107.95 -0.67 -13.48 16 14 C 0.18 4.14 2.17 -68.86 -0.15 3.99 16 15 H 0.03 0.77 6.85 -51.93 -0.36 0.42 16 16 C -0.18 -3.86 8.64 37.16 0.32 -3.54 16 17 C -0.50 -13.84 9.42 -34.44 -0.32 -14.16 16 18 H 0.08 2.49 8.06 -52.49 -0.42 2.07 16 19 C 0.07 1.91 5.45 -17.82 -0.10 1.81 16 20 N -0.90 -27.39 13.96 55.43 0.77 -26.61 16 21 Si 0.89 21.60 24.37 -169.99 -4.14 17.46 16 22 H -0.28 -6.71 6.87 56.52 0.39 -6.32 16 23 H -0.30 -7.26 7.11 56.52 0.40 -6.86 16 24 H -0.27 -6.24 6.53 56.52 0.37 -5.87 16 25 C -0.23 -1.89 8.96 -39.80 -0.36 -2.25 16 26 C -0.01 -0.10 9.36 -39.57 -0.37 -0.47 16 27 C -0.20 -1.82 5.87 -105.01 -0.62 -2.44 16 28 H 0.09 0.24 8.14 -51.93 -0.42 -0.19 16 29 H 0.08 0.20 8.10 -51.93 -0.42 -0.22 16 30 H 0.08 0.18 6.62 -51.93 -0.34 -0.16 16 31 H 0.16 1.10 8.06 -52.49 -0.42 0.67 16 32 H 0.15 1.70 8.06 -52.49 -0.42 1.28 16 33 H 0.08 0.85 7.64 -51.93 -0.40 0.46 16 34 H 0.07 0.54 7.64 -51.93 -0.40 0.14 16 35 H 0.09 1.23 8.05 -51.93 -0.42 0.81 16 36 H 0.03 0.46 7.44 -51.93 -0.39 0.08 16 37 H 0.34 6.38 8.03 -39.29 -0.32 6.07 16 38 H 0.05 1.16 8.13 -51.93 -0.42 0.74 16 39 H 0.05 1.01 3.28 -51.93 -0.17 0.84 16 40 H 0.03 0.49 7.45 -51.93 -0.39 0.10 16 41 H 0.26 7.52 8.31 -40.82 -0.34 7.19 16 42 H 0.14 0.92 6.24 -52.49 -0.33 0.60 16 43 H 0.14 0.54 6.53 -52.48 -0.34 0.20 16 LS Contribution 352.51 15.07 5.31 5.31 Total: -1.00 -33.40 352.51 -7.76 -41.16 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -5.56 Total: 2.05 kcal Atomic # 6 Polarization: -7.71 SS G_CDS: -2.74 Total: -10.45 kcal Atomic # 7 Polarization: -40.20 SS G_CDS: 0.10 Total: -40.10 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: -0.74 Total: -15.44 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.14 Total: 17.46 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.40 -7.76 -41.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878817232.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.628 kcal (2) G-P(sol) polarization free energy of solvation -33.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds