Wall clock time and date at job start Tue Mar 31 2020 11:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35841 * 120.90357 * 2 1 4 4 C 1.41000 * 119.82573 * 180.02562 * 3 2 1 5 5 O 1.21798 * 119.15702 * 180.02562 * 4 3 2 6 6 O 1.34223 * 121.68717 * 0.02562 * 4 3 2 7 7 C 1.35024 * 121.46684 * 359.97438 * 6 4 3 8 8 C 1.38680 * 120.74092 * 180.32091 * 7 6 4 9 9 C 1.38510 * 119.78666 * 180.20761 * 8 7 6 10 10 O 1.35749 * 119.72852 * 179.76822 * 9 8 7 11 11 C 1.42905 * 116.99982 * 179.72270 * 10 9 8 12 12 C 1.52999 * 109.46728 * 180.02562 * 11 10 9 13 13 N 1.46897 * 109.47150 * 65.00694 * 12 11 10 14 14 C 1.46904 * 111.00309 * 179.97438 * 13 12 11 15 15 H 1.09001 * 109.46483 * 324.99541 * 14 13 12 16 16 C 1.53004 * 109.47224 * 84.99331 * 14 13 12 17 17 C 1.50700 * 109.47153 * 204.99750 * 14 13 12 18 18 H 1.07999 * 120.00099 * 359.97438 * 17 14 13 19 19 C 1.37881 * 119.99718 * 179.97438 * 17 14 13 20 20 N 1.31509 * 119.99971 * 179.97438 * 19 17 14 21 21 Si 1.86800 * 119.99905 * 359.97438 * 19 17 14 22 22 H 1.48501 * 109.47135 * 90.00432 * 21 19 17 23 23 H 1.48511 * 109.47016 * 210.00052 * 21 19 17 24 24 H 1.48498 * 109.47202 * 329.99580 * 21 19 17 25 25 C 1.39368 * 120.54600 * 359.49396 * 9 8 7 26 26 C 1.36462 * 120.42646 * 0.23018 * 25 9 8 27 27 C 1.39969 * 119.79554 * 0.02562 * 26 25 9 28 28 H 1.09001 * 109.47243 * 269.99769 * 1 2 3 29 29 H 1.09000 * 109.47255 * 29.99948 * 1 2 3 30 30 H 1.09001 * 109.47268 * 149.99899 * 1 2 3 31 31 H 1.07999 * 120.08781 * 359.97438 * 3 2 1 32 32 H 1.07999 * 120.10547 * 359.97285 * 8 7 6 33 33 H 1.09000 * 109.47187 * 300.00263 * 11 10 9 34 34 H 1.09001 * 109.46558 * 60.00311 * 11 10 9 35 35 H 1.09000 * 109.46738 * 185.00163 * 12 11 10 36 36 H 1.08994 * 109.47465 * 305.00250 * 12 11 10 37 37 H 1.00901 * 110.99808 * 303.94335 * 13 12 11 38 38 H 1.09001 * 109.46879 * 60.00236 * 16 14 13 39 39 H 1.08997 * 109.46957 * 180.02562 * 16 14 13 40 40 H 1.08995 * 109.47061 * 300.00298 * 16 14 13 41 41 H 0.96996 * 120.00657 * 179.97438 * 20 19 17 42 42 H 1.08002 * 119.79051 * 180.25905 * 25 9 8 43 43 H 1.08008 * 120.10066 * 180.02562 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2047 1.1656 0.0000 4 6 3.6144 1.1390 -0.0005 5 8 4.2277 2.1913 -0.0001 6 8 4.2978 -0.0162 -0.0016 7 6 3.6655 -1.2092 -0.0016 8 6 4.3867 -2.3937 0.0040 9 6 3.7178 -3.6066 -0.0006 10 8 4.4250 -4.7653 0.0002 11 6 3.6760 -5.9824 0.0015 12 6 4.6374 -7.1727 0.0028 13 7 5.4003 -7.1846 1.2581 14 6 6.3354 -8.3169 1.2951 15 1 5.8883 -9.1739 0.7914 16 6 7.6344 -7.9290 0.5857 17 6 6.6334 -8.6756 2.7282 18 1 6.1743 -8.1180 3.5311 19 6 7.4921 -9.7158 3.0142 20 7 7.7525 -10.0286 4.2647 21 14 8.2855 -10.6807 1.6253 22 1 9.5757 -10.0455 1.2553 23 1 8.5303 -12.0766 2.0693 24 1 7.3811 -10.6874 0.4475 25 6 2.3247 -3.6472 -0.0001 26 6 1.5997 -2.4911 0.0001 27 6 2.2591 -1.2565 -0.0007 28 1 -0.3634 0.0000 1.0277 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3634 -0.8900 -0.5138 31 1 1.6809 2.1101 -0.0004 32 1 5.4665 -2.3705 0.0080 33 1 3.0483 -6.0218 0.8917 34 1 3.0477 -6.0233 -0.8883 35 1 4.0692 -8.0986 -0.0858 36 1 5.3242 -7.0859 -0.8390 37 1 5.8851 -6.3103 1.3948 38 1 8.0815 -7.0719 1.0894 39 1 8.3281 -8.7693 0.6129 40 1 7.4189 -7.6696 -0.4507 41 1 8.3563 -10.7605 4.4660 42 1 1.8157 -4.5997 0.0006 43 1 0.5202 -2.5287 0.0009 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878817232.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:12 Heat of formation + Delta-G solvation = -83.573590 kcal Electronic energy + Delta-G solvation = -25318.356284 eV Core-core repulsion = 21521.979447 eV Total energy + Delta-G solvation = -3796.376837 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.01302 -41.09764 -39.36619 -38.24964 -37.73503 -36.13571 -34.60545 -32.61085 -31.88165 -30.29430 -29.69493 -28.57790 -27.11857 -25.47526 -24.42091 -23.52958 -22.62920 -22.10074 -20.63237 -19.30709 -18.84481 -18.55470 -17.98883 -17.95443 -17.24791 -16.93003 -16.55837 -16.07286 -15.87117 -15.44990 -15.23331 -15.03024 -14.70801 -14.67184 -14.52579 -14.33239 -14.30646 -13.98423 -13.71462 -13.45017 -13.28709 -12.98853 -12.90894 -12.73883 -12.58155 -12.38882 -12.01904 -11.97773 -11.94218 -11.44919 -11.42352 -11.16138 -10.77263 -10.73674 -9.95210 -9.12128 -9.05049 -8.26418 -6.29109 -0.77734 -0.06844 0.49287 1.15877 1.31264 1.35313 1.46195 1.74311 2.21290 2.32764 2.61234 3.07863 3.11987 3.28472 3.37396 3.45281 3.69089 3.87646 4.00778 4.17051 4.26924 4.29520 4.38455 4.40484 4.44799 4.55098 4.58480 4.67635 4.70383 4.78786 4.83589 4.84686 4.86442 4.96229 5.02983 5.10496 5.23089 5.29387 5.38031 5.38792 5.67174 6.00926 6.05829 6.25353 6.35955 6.67488 6.71550 6.78940 7.36008 8.91138 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.024704 B = 0.002298 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.124720 B =12181.481645 C =12678.014428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.074 3.926 3 C -0.297 4.297 4 C 0.503 3.497 5 O -0.523 6.523 6 O -0.295 6.295 7 C 0.167 3.833 8 C -0.203 4.203 9 C 0.192 3.808 10 O -0.322 6.322 11 C 0.062 3.938 12 C 0.053 3.947 13 N -0.686 5.686 14 C 0.187 3.813 15 H 0.037 0.963 16 C -0.178 4.178 17 C -0.504 4.504 18 H 0.034 0.966 19 C 0.006 3.994 20 N -0.953 5.953 21 Si 0.954 3.046 22 H -0.272 1.272 23 H -0.299 1.299 24 H -0.244 1.244 25 C -0.221 4.221 26 C 0.005 3.995 27 C -0.209 4.209 28 H 0.110 0.890 29 H 0.098 0.902 30 H 0.104 0.896 31 H 0.179 0.821 32 H 0.138 0.862 33 H 0.083 0.917 34 H 0.106 0.894 35 H 0.101 0.899 36 H 0.037 0.963 37 H 0.337 0.663 38 H 0.049 0.951 39 H 0.036 0.964 40 H 0.060 0.940 41 H 0.265 0.735 42 H 0.171 0.829 43 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.202 15.801 -15.118 30.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.073 3.927 3 C -0.315 4.315 4 C 0.357 3.643 5 O -0.416 6.416 6 O -0.207 6.207 7 C 0.122 3.878 8 C -0.222 4.222 9 C 0.145 3.855 10 O -0.235 6.235 11 C -0.012 4.012 12 C -0.076 4.076 13 N -0.316 5.316 14 C 0.077 3.923 15 H 0.055 0.945 16 C -0.237 4.237 17 C -0.543 4.543 18 H 0.052 0.948 19 C -0.191 4.191 20 N -0.594 5.594 21 Si 0.781 3.219 22 H -0.198 1.198 23 H -0.227 1.227 24 H -0.167 1.167 25 C -0.240 4.240 26 C -0.013 4.013 27 C -0.209 4.209 28 H 0.128 0.872 29 H 0.117 0.883 30 H 0.123 0.877 31 H 0.196 0.804 32 H 0.155 0.845 33 H 0.101 0.899 34 H 0.124 0.876 35 H 0.119 0.881 36 H 0.055 0.945 37 H 0.154 0.846 38 H 0.068 0.932 39 H 0.054 0.946 40 H 0.079 0.921 41 H 0.074 0.926 42 H 0.188 0.812 43 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -20.926 15.807 -14.667 30.048 hybrid contribution 2.005 -0.131 -0.441 2.057 sum -18.921 15.676 -15.109 28.844 Atomic orbital electron populations 1.21234 0.85381 1.06298 1.05559 1.21921 0.98907 0.89297 0.82569 1.22305 0.90625 1.02122 1.16498 1.19828 0.89654 0.80346 0.74499 1.90930 1.73240 1.27134 1.50333 1.83459 1.45030 1.14607 1.77635 1.18804 0.90813 0.82174 0.96008 1.19538 1.01375 0.87738 1.13555 1.18927 0.91074 0.85235 0.90278 1.86062 1.37476 1.13276 1.86641 1.23240 0.94433 0.79598 1.03897 1.22186 0.96595 0.97478 0.91312 1.60534 1.30654 1.06030 1.34385 1.19423 0.88298 0.90629 0.93951 0.94532 1.22733 1.00325 1.00703 0.99912 1.21302 1.25486 1.15099 0.92415 0.94781 1.25853 0.97144 0.98246 0.97824 1.70048 1.38071 1.31018 1.20241 0.85788 0.79520 0.76583 0.80010 1.19846 1.22720 1.16745 1.21473 0.91450 1.02102 1.08944 1.21174 1.02216 0.88089 0.89797 1.19230 0.90551 0.96323 1.14844 0.87201 0.88334 0.87709 0.80364 0.84452 0.89885 0.87579 0.88141 0.94484 0.84572 0.93233 0.94581 0.92098 0.92643 0.81159 0.79394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.21 9.64 71.24 0.69 0.47 16 2 C 0.07 0.87 6.08 -18.28 -0.11 0.75 16 3 C -0.30 -5.11 9.62 22.39 0.22 -4.89 16 4 C 0.50 13.71 7.89 68.50 0.54 14.25 16 5 O -0.52 -18.02 17.91 18.96 0.34 -17.68 16 6 O -0.30 -8.38 9.82 14.68 0.14 -8.23 16 7 C 0.17 3.84 6.76 22.98 0.16 4.00 16 8 C -0.20 -4.79 9.94 22.44 0.22 -4.57 16 9 C 0.19 3.92 6.69 22.61 0.15 4.07 16 10 O -0.32 -7.52 9.64 -90.74 -0.87 -8.40 16 11 C 0.06 1.18 5.07 71.98 0.36 1.54 16 12 C 0.05 1.39 5.90 86.30 0.51 1.90 16 13 N -0.69 -25.52 6.23 -495.45 -3.09 -28.60 16 14 C 0.19 8.27 2.17 44.17 0.10 8.37 16 15 H 0.04 1.61 6.85 -2.39 -0.02 1.60 16 16 C -0.18 -7.16 8.64 71.98 0.62 -6.54 16 17 C -0.50 -28.59 9.42 25.60 0.24 -28.35 16 18 H 0.03 2.19 8.06 -2.91 -0.02 2.16 16 19 C 0.01 0.34 5.45 84.66 0.46 0.80 16 20 N -0.95 -59.87 13.96 21.45 0.30 -59.57 16 21 Si 0.95 44.25 24.37 68.60 1.67 45.92 16 22 H -0.27 -12.18 6.87 99.48 0.68 -11.49 16 23 H -0.30 -13.91 7.11 99.48 0.71 -13.21 16 24 H -0.24 -10.18 6.53 99.48 0.65 -9.53 16 25 C -0.22 -2.83 8.96 22.13 0.20 -2.63 16 26 C 0.00 0.04 9.36 22.27 0.21 0.25 16 27 C -0.21 -3.24 5.87 -20.12 -0.12 -3.36 16 28 H 0.11 -0.06 8.14 -2.39 -0.02 -0.07 16 29 H 0.10 -0.02 8.10 -2.39 -0.02 -0.04 16 30 H 0.10 -0.24 6.62 -2.39 -0.02 -0.26 16 31 H 0.18 2.25 8.06 -2.91 -0.02 2.23 16 32 H 0.14 3.46 8.06 -2.91 -0.02 3.44 16 33 H 0.08 1.51 7.64 -2.39 -0.02 1.49 16 34 H 0.11 1.18 7.64 -2.39 -0.02 1.17 16 35 H 0.10 2.41 8.05 -2.39 -0.02 2.39 16 36 H 0.04 0.94 7.44 -2.39 -0.02 0.93 16 37 H 0.34 12.67 8.03 -89.69 -0.72 11.95 16 38 H 0.05 2.02 8.13 -2.39 -0.02 2.00 16 39 H 0.04 1.51 3.28 -2.39 -0.01 1.50 16 40 H 0.06 2.03 7.45 -2.39 -0.02 2.01 16 41 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 42 H 0.17 1.25 6.24 -2.91 -0.02 1.23 16 43 H 0.19 0.06 6.53 -2.91 -0.02 0.04 16 Total: -1.00 -79.37 352.51 3.19 -76.18 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: 0.25 Total: 14.33 kcal Atomic # 6 Polarization: -18.38 SS G_CDS: 4.44 Total: -13.94 kcal Atomic # 7 Polarization: -85.39 SS G_CDS: -2.79 Total: -88.18 kcal Atomic # 8 Polarization: -33.92 SS G_CDS: -0.39 Total: -34.31 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 1.67 Total: 45.92 kcal Total: -79.37 3.19 -76.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878817232.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.394 kcal (2) G-P(sol) polarization free energy of solvation -79.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds