Wall clock time and date at job start Tue Mar 31 2020 11:33:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52995 * 109.47264 * 2 1 4 4 C 1.53002 * 109.47075 * 240.00293 * 2 1 3 5 5 C 1.50696 * 109.47115 * 120.00427 * 2 1 3 6 6 N 1.29032 * 124.92086 * 59.95943 * 5 2 1 7 7 C 1.31776 * 117.12543 * 179.75641 * 6 5 2 8 8 C 1.33639 * 114.50263 * 0.51213 * 7 6 5 9 9 C 1.50696 * 126.03976 * 179.79087 * 8 7 6 10 10 N 1.46506 * 109.47148 * 89.69268 * 9 8 7 11 11 C 1.38820 * 120.00168 * 179.72378 * 10 9 8 12 12 C 1.39803 * 119.58330 * 0.02562 * 11 10 9 13 13 C 1.38594 * 119.48821 * 179.97438 * 12 11 10 14 14 C 1.38391 * 118.68510 * 0.02562 * 13 12 11 15 15 C 1.40560 * 119.14648 * 359.97438 * 14 13 12 16 16 C 1.41307 * 119.78226 * 180.02562 * 15 14 13 17 17 H 1.08002 * 120.00244 * 0.02562 * 16 15 14 18 18 C 1.40029 * 119.99839 * 180.02562 * 16 15 14 19 19 N 1.30744 * 120.00140 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99911 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47281 * 89.99918 * 20 18 16 22 22 H 1.48503 * 109.47149 * 210.00038 * 20 18 16 23 23 H 1.48506 * 109.47216 * 329.99792 * 20 18 16 24 24 N 1.31959 * 119.58462 * 179.72793 * 11 10 9 25 25 S 1.70982 * 124.91429 * 239.99740 * 5 2 1 26 26 H 1.08995 * 109.47401 * 299.99960 * 1 2 3 27 27 H 1.09005 * 109.47016 * 60.00118 * 1 2 3 28 28 H 1.09004 * 109.47447 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47073 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47671 * 300.00067 * 3 2 1 31 31 H 1.09005 * 109.47247 * 60.00084 * 3 2 1 32 32 H 1.09004 * 109.47223 * 299.99674 * 4 2 1 33 33 H 1.08996 * 109.47303 * 59.99972 * 4 2 1 34 34 H 1.09003 * 109.47032 * 180.02562 * 4 2 1 35 35 H 1.08005 * 122.75064 * 180.33533 * 7 6 5 36 36 H 1.09001 * 109.47545 * 329.69739 * 9 8 7 37 37 H 1.08998 * 109.47669 * 209.69682 * 9 8 7 38 38 H 0.97005 * 119.99811 * 0.02562 * 10 9 8 39 39 H 1.07997 * 120.25405 * 359.96057 * 12 11 10 40 40 H 1.08002 * 120.65882 * 180.02562 * 13 12 11 41 41 H 1.07992 * 120.42438 * 179.97438 * 14 13 12 42 42 H 0.96994 * 119.99729 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0322 -0.7105 1.2304 6 7 1.7791 -1.9401 1.5283 7 6 2.3027 -2.4082 2.6433 8 6 3.0297 -1.5212 3.3294 9 6 3.7383 -1.7757 4.6347 10 7 5.0958 -2.2577 4.3676 11 6 5.9467 -2.5562 5.4230 12 6 5.4990 -2.3941 6.7375 13 6 6.3500 -2.6932 7.7898 14 6 7.6262 -3.1459 7.5040 15 6 8.0175 -3.2880 6.1614 16 6 9.3172 -3.7497 5.8543 17 1 10.0062 -3.9924 6.6498 18 6 9.7120 -3.8925 4.5184 19 7 8.8778 -3.5992 3.5553 20 14 11.4299 -4.5034 4.1124 21 1 11.4166 -5.9846 4.0073 22 1 11.8703 -3.9195 2.8199 23 1 12.3686 -4.0918 5.1870 24 7 7.1658 -2.9949 5.1730 25 16 3.0194 -0.0035 2.4342 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 1.6766 -1.7489 -1.2493 33 1 1.6766 -0.2074 -2.1392 34 1 3.1299 -0.7216 -1.2491 35 1 2.1541 -3.4246 2.9770 36 1 3.1916 -2.5271 5.2045 37 1 3.7877 -0.8500 5.2080 38 1 5.4015 -2.3641 3.4531 39 1 4.4979 -2.0384 6.9315 40 1 6.0237 -2.5754 8.8125 41 1 8.3125 -3.3868 8.3022 42 1 9.1514 -3.6977 2.6300 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000883356291.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:04 Heat of formation + Delta-G solvation = 69.382736 kcal Electronic energy + Delta-G solvation = -23027.658923 eV Core-core repulsion = 19712.960392 eV Total energy + Delta-G solvation = -3314.698531 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.97065 -38.28257 -37.02556 -35.18170 -33.32071 -31.02350 -30.19714 -28.46223 -27.71006 -27.51550 -26.14764 -25.34402 -23.83483 -21.51725 -21.13794 -20.42834 -18.75587 -17.81378 -17.36143 -16.42639 -15.57008 -15.13074 -14.85555 -14.72628 -14.51057 -14.26027 -14.00401 -13.71473 -13.67336 -13.20915 -13.10917 -12.65415 -12.45026 -12.34696 -12.12447 -11.95296 -11.84552 -11.58967 -11.30585 -11.29417 -11.21821 -11.07472 -10.98629 -10.63617 -10.46789 -9.94990 -9.61047 -9.48244 -9.25880 -8.91784 -8.82707 -7.92206 -7.51829 -6.55519 -6.32880 -4.47742 0.65494 1.31500 1.77852 2.80989 2.87434 3.11453 3.14592 3.22850 3.29595 3.87543 3.98563 4.30660 4.50518 4.62060 4.75946 4.83768 4.94486 5.15036 5.27052 5.29680 5.34624 5.47326 5.57935 5.61826 5.67501 5.77216 5.81323 5.89683 5.99154 6.03457 6.09105 6.14048 6.21928 6.54695 6.83633 6.87926 6.91672 7.24450 7.57619 7.71865 7.79263 7.90067 8.15440 8.33588 8.64804 8.79582 9.10421 10.23778 10.39883 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.016672 B = 0.003007 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.097787 B = 9308.001298 C =10471.567535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.011 3.989 3 C -0.155 4.155 4 C -0.135 4.135 5 C 0.050 3.950 6 N -0.472 5.472 7 C 0.053 3.947 8 C -0.234 4.234 9 C 0.221 3.779 10 N -0.736 5.736 11 C 0.412 3.588 12 C -0.368 4.368 13 C -0.031 4.031 14 C -0.315 4.315 15 C 0.292 3.708 16 C -0.433 4.433 17 H 0.083 0.917 18 C 0.071 3.929 19 N -0.715 5.715 20 Si 0.905 3.095 21 H -0.270 1.270 22 H -0.277 1.277 23 H -0.262 1.262 24 N -0.530 5.530 25 S 0.140 5.860 26 H 0.055 0.945 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.057 0.943 35 H 0.175 0.825 36 H 0.073 0.927 37 H 0.063 0.937 38 H 0.397 0.603 39 H 0.090 0.910 40 H 0.093 0.907 41 H 0.095 0.905 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.104 8.207 -8.421 18.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.007 3.993 3 C -0.213 4.213 4 C -0.193 4.193 5 C -0.227 4.227 6 N -0.185 5.185 7 C -0.099 4.099 8 C -0.356 4.356 9 C 0.093 3.907 10 N -0.374 5.374 11 C 0.172 3.828 12 C -0.395 4.395 13 C -0.056 4.056 14 C -0.339 4.339 15 C 0.165 3.835 16 C -0.465 4.465 17 H 0.101 0.899 18 C -0.154 4.154 19 N -0.337 5.337 20 Si 0.729 3.271 21 H -0.195 1.195 22 H -0.202 1.202 23 H -0.186 1.186 24 N -0.252 5.252 25 S 0.397 5.603 26 H 0.074 0.926 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.192 0.808 36 H 0.091 0.909 37 H 0.081 0.919 38 H 0.232 0.768 39 H 0.108 0.892 40 H 0.111 0.889 41 H 0.113 0.887 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -13.874 8.840 -9.561 19.028 hybrid contribution 0.451 -1.176 0.739 1.461 sum -13.423 7.664 -8.822 17.797 Atomic orbital electron populations 1.21828 0.92385 1.03011 1.01935 1.19208 0.96473 0.93958 0.89632 1.22036 1.01933 0.94268 1.03056 1.21842 1.01387 1.00999 0.95103 1.27093 1.00645 0.93882 1.01109 1.66184 1.23417 1.11739 1.17194 1.21749 0.96797 1.01146 0.90223 1.26134 1.08158 0.96848 1.04442 1.19269 0.83025 0.99259 0.89125 1.44161 1.10815 1.75083 1.07306 1.18470 0.89238 0.89936 0.85136 1.20589 1.01131 1.25367 0.92367 1.20592 0.93601 0.94969 0.96398 1.21542 0.97508 1.17540 0.97266 1.18198 0.91819 0.87259 0.86195 1.19586 0.96903 1.37555 0.92493 0.89860 1.26056 0.98650 0.94213 0.96505 1.70150 1.33919 1.29597 0.99989 0.86377 0.82480 0.79567 0.78644 1.19496 1.20249 1.18586 1.68197 1.00622 1.21884 1.34479 1.84035 1.46696 1.14331 1.15254 0.92553 0.91740 0.91476 0.91672 0.90763 0.91818 0.91453 0.91725 0.92359 0.80756 0.90875 0.91888 0.76840 0.89228 0.88890 0.88671 0.91941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.09 8.45 37.15 0.31 -0.77 16 2 C 0.01 0.10 0.99 -155.67 -0.15 -0.05 16 3 C -0.15 -1.19 7.54 37.16 0.28 -0.91 16 4 C -0.13 -1.21 8.45 37.16 0.31 -0.89 16 5 C 0.05 0.61 5.78 -13.46 -0.08 0.54 16 6 N -0.47 -6.54 10.53 -11.86 -0.12 -6.66 16 7 C 0.05 0.74 11.25 -19.19 -0.22 0.52 16 8 C -0.23 -3.32 5.97 -35.92 -0.21 -3.53 16 9 C 0.22 3.50 5.41 -5.19 -0.03 3.47 16 10 N -0.74 -14.90 5.71 -61.57 -0.35 -15.25 16 11 C 0.41 10.08 7.65 -155.32 -1.19 8.89 16 12 C -0.37 -8.46 9.34 -38.87 -0.36 -8.82 16 13 C -0.03 -0.72 10.15 -39.39 -0.40 -1.12 16 14 C -0.32 -8.02 9.83 -38.65 -0.38 -8.40 16 15 C 0.29 8.19 6.55 -85.00 -0.56 7.63 16 16 C -0.43 -11.81 9.14 -37.74 -0.34 -12.15 16 17 H 0.08 2.13 7.85 -52.49 -0.41 1.71 16 18 C 0.07 1.83 5.50 -17.34 -0.10 1.73 16 19 N -0.71 -19.19 11.46 55.55 0.64 -18.56 16 20 Si 0.91 18.87 29.56 -169.99 -5.02 13.85 16 21 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 22 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 23 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 24 N -0.53 -14.76 7.89 -10.33 -0.08 -14.84 16 25 S 0.14 1.74 21.57 -107.50 -2.32 -0.58 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.53 7.92 -51.93 -0.41 0.12 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.47 7.92 -51.93 -0.41 0.06 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.18 2.21 8.06 -52.48 -0.42 1.79 16 36 H 0.07 1.11 7.93 -51.93 -0.41 0.70 16 37 H 0.06 0.98 7.90 -51.93 -0.41 0.57 16 38 H 0.40 8.31 8.58 -40.82 -0.35 7.96 16 39 H 0.09 1.81 6.68 -52.49 -0.35 1.45 16 40 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 41 H 0.10 2.25 8.06 -52.49 -0.42 1.82 16 42 H 0.27 6.59 8.29 -40.82 -0.34 6.26 16 LS Contribution 364.27 15.07 5.49 5.49 Total: -1.00 -30.30 364.27 -11.01 -41.31 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -6.12 Total: 9.11 kcal Atomic # 6 Polarization: -10.76 SS G_CDS: -3.11 Total: -13.87 kcal Atomic # 7 Polarization: -55.39 SS G_CDS: 0.08 Total: -55.31 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -5.02 Total: 13.85 kcal Atomic # 16 Polarization: 1.74 SS G_CDS: -2.32 Total: -0.58 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.30 -11.01 -41.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883356291.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.692 kcal (2) G-P(sol) polarization free energy of solvation -30.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds