Wall clock time and date at job start Tue Mar 31 2020 11:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52995 * 109.47264 * 2 1 4 4 C 1.53002 * 109.47075 * 240.00293 * 2 1 3 5 5 C 1.50696 * 109.47115 * 120.00427 * 2 1 3 6 6 N 1.29032 * 124.92086 * 59.95943 * 5 2 1 7 7 C 1.31776 * 117.12543 * 179.75641 * 6 5 2 8 8 C 1.33639 * 114.50263 * 0.51213 * 7 6 5 9 9 C 1.50696 * 126.03976 * 179.79087 * 8 7 6 10 10 N 1.46506 * 109.47148 * 89.69268 * 9 8 7 11 11 C 1.38820 * 120.00168 * 179.72378 * 10 9 8 12 12 C 1.39803 * 119.58330 * 0.02562 * 11 10 9 13 13 C 1.38594 * 119.48821 * 179.97438 * 12 11 10 14 14 C 1.38391 * 118.68510 * 0.02562 * 13 12 11 15 15 C 1.40560 * 119.14648 * 359.97438 * 14 13 12 16 16 C 1.41307 * 119.78226 * 180.02562 * 15 14 13 17 17 H 1.08002 * 120.00244 * 0.02562 * 16 15 14 18 18 C 1.40029 * 119.99839 * 180.02562 * 16 15 14 19 19 N 1.30744 * 120.00140 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99911 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47281 * 89.99918 * 20 18 16 22 22 H 1.48503 * 109.47149 * 210.00038 * 20 18 16 23 23 H 1.48506 * 109.47216 * 329.99792 * 20 18 16 24 24 N 1.31959 * 119.58462 * 179.72793 * 11 10 9 25 25 S 1.70982 * 124.91429 * 239.99740 * 5 2 1 26 26 H 1.08995 * 109.47401 * 299.99960 * 1 2 3 27 27 H 1.09005 * 109.47016 * 60.00118 * 1 2 3 28 28 H 1.09004 * 109.47447 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47073 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47671 * 300.00067 * 3 2 1 31 31 H 1.09005 * 109.47247 * 60.00084 * 3 2 1 32 32 H 1.09004 * 109.47223 * 299.99674 * 4 2 1 33 33 H 1.08996 * 109.47303 * 59.99972 * 4 2 1 34 34 H 1.09003 * 109.47032 * 180.02562 * 4 2 1 35 35 H 1.08005 * 122.75064 * 180.33533 * 7 6 5 36 36 H 1.09001 * 109.47545 * 329.69739 * 9 8 7 37 37 H 1.08998 * 109.47669 * 209.69682 * 9 8 7 38 38 H 0.97005 * 119.99811 * 0.02562 * 10 9 8 39 39 H 1.07997 * 120.25405 * 359.96057 * 12 11 10 40 40 H 1.08002 * 120.65882 * 180.02562 * 13 12 11 41 41 H 1.07992 * 120.42438 * 179.97438 * 14 13 12 42 42 H 0.96994 * 119.99729 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0322 -0.7105 1.2304 6 7 1.7791 -1.9401 1.5283 7 6 2.3027 -2.4082 2.6433 8 6 3.0297 -1.5212 3.3294 9 6 3.7383 -1.7757 4.6347 10 7 5.0958 -2.2577 4.3676 11 6 5.9467 -2.5562 5.4230 12 6 5.4990 -2.3941 6.7375 13 6 6.3500 -2.6932 7.7898 14 6 7.6262 -3.1459 7.5040 15 6 8.0175 -3.2880 6.1614 16 6 9.3172 -3.7497 5.8543 17 1 10.0062 -3.9924 6.6498 18 6 9.7120 -3.8925 4.5184 19 7 8.8778 -3.5992 3.5553 20 14 11.4299 -4.5034 4.1124 21 1 11.4166 -5.9846 4.0073 22 1 11.8703 -3.9195 2.8199 23 1 12.3686 -4.0918 5.1870 24 7 7.1658 -2.9949 5.1730 25 16 3.0194 -0.0035 2.4342 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 1.6766 -1.7489 -1.2493 33 1 1.6766 -0.2074 -2.1392 34 1 3.1299 -0.7216 -1.2491 35 1 2.1541 -3.4246 2.9770 36 1 3.1916 -2.5271 5.2045 37 1 3.7877 -0.8500 5.2080 38 1 5.4015 -2.3641 3.4531 39 1 4.4979 -2.0384 6.9315 40 1 6.0237 -2.5754 8.8125 41 1 8.3125 -3.3868 8.3022 42 1 9.1514 -3.6977 2.6300 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000883356291.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:03 Heat of formation + Delta-G solvation = 52.856511 kcal Electronic energy + Delta-G solvation = -23028.375554 eV Core-core repulsion = 19712.960392 eV Total energy + Delta-G solvation = -3315.415162 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.99607 -40.10833 -37.91743 -36.71565 -35.16944 -32.61136 -31.96616 -30.07317 -28.34874 -28.18970 -27.42849 -27.16100 -25.04238 -23.36445 -22.31850 -21.98953 -19.82830 -19.24439 -18.79039 -18.06505 -16.86440 -16.53769 -16.35191 -16.08627 -15.74558 -15.42239 -15.15500 -15.06851 -14.93708 -14.58662 -14.47703 -13.96198 -13.81981 -13.46311 -13.11064 -13.09331 -12.88371 -12.73564 -12.62951 -12.59656 -12.44363 -12.24763 -12.23815 -11.98993 -11.91485 -11.75528 -11.31640 -10.73018 -10.56251 -10.31771 -9.87073 -9.84627 -9.45694 -8.34988 -8.23667 -6.48590 -0.39404 0.29927 0.74411 1.05140 1.33983 1.40714 1.53824 1.58028 1.73625 2.24275 2.73528 2.91832 3.00941 3.69595 3.76782 3.93760 4.00855 4.01950 4.16664 4.34238 4.37317 4.51252 4.67794 4.72661 4.76728 4.78407 4.83204 4.94066 4.95317 4.96786 4.98248 5.00495 5.08298 5.10146 5.24414 5.34361 5.34630 5.38643 5.70095 5.95647 6.04568 6.21123 6.51249 6.68487 6.79867 6.89437 7.18150 8.32811 8.50158 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.016672 B = 0.003007 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.097787 B = 9308.001298 C =10471.567535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.006 3.994 3 C -0.154 4.154 4 C -0.132 4.132 5 C 0.057 3.943 6 N -0.494 5.494 7 C 0.053 3.947 8 C -0.255 4.255 9 C 0.225 3.775 10 N -0.731 5.731 11 C 0.395 3.605 12 C -0.365 4.365 13 C -0.029 4.029 14 C -0.342 4.342 15 C 0.259 3.741 16 C -0.470 4.470 17 H 0.087 0.913 18 C 0.026 3.974 19 N -0.752 5.752 20 Si 0.986 3.014 21 H -0.264 1.264 22 H -0.269 1.269 23 H -0.256 1.256 24 N -0.566 5.566 25 S 0.156 5.844 26 H 0.055 0.945 27 H 0.089 0.911 28 H 0.052 0.948 29 H 0.057 0.943 30 H 0.098 0.902 31 H 0.066 0.934 32 H 0.052 0.948 33 H 0.090 0.910 34 H 0.047 0.953 35 H 0.181 0.819 36 H 0.083 0.917 37 H 0.069 0.931 38 H 0.390 0.610 39 H 0.121 0.879 40 H 0.131 0.869 41 H 0.103 0.897 42 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.018 9.256 -9.098 19.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.002 3.998 3 C -0.212 4.212 4 C -0.191 4.191 5 C -0.220 4.220 6 N -0.208 5.208 7 C -0.100 4.100 8 C -0.377 4.377 9 C 0.099 3.901 10 N -0.367 5.367 11 C 0.155 3.845 12 C -0.391 4.391 13 C -0.053 4.053 14 C -0.365 4.365 15 C 0.132 3.868 16 C -0.502 4.502 17 H 0.105 0.895 18 C -0.196 4.196 19 N -0.375 5.375 20 Si 0.806 3.194 21 H -0.189 1.189 22 H -0.194 1.194 23 H -0.179 1.179 24 N -0.289 5.289 25 S 0.414 5.586 26 H 0.075 0.925 27 H 0.108 0.892 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.117 0.883 31 H 0.085 0.915 32 H 0.071 0.929 33 H 0.109 0.891 34 H 0.066 0.934 35 H 0.198 0.802 36 H 0.101 0.899 37 H 0.087 0.913 38 H 0.224 0.776 39 H 0.139 0.861 40 H 0.149 0.851 41 H 0.121 0.879 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -14.836 9.914 -10.226 20.566 hybrid contribution 0.551 -1.428 0.918 1.784 sum -14.285 8.487 -9.309 19.046 Atomic orbital electron populations 1.21810 0.91230 1.02500 1.03208 1.19462 0.97351 0.94669 0.88282 1.22059 1.01522 0.93161 1.04438 1.21839 1.00715 1.00512 0.96043 1.27774 0.99244 0.93495 1.01512 1.66250 1.24454 1.12639 1.17418 1.21933 0.96349 1.01488 0.90197 1.25951 1.09109 0.98125 1.04471 1.19347 0.80888 0.99529 0.90378 1.44337 1.11912 1.74345 1.06101 1.18902 0.89042 0.89620 0.86932 1.20956 1.02419 1.24075 0.91672 1.21021 0.92600 0.93272 0.98410 1.21707 0.99050 1.19136 0.96638 1.18676 0.92613 0.88034 0.87525 1.19941 0.97408 1.39190 0.93708 0.89486 1.26965 1.03035 0.93844 0.95760 1.70255 1.36147 1.30582 1.00467 0.85169 0.76726 0.78949 0.78571 1.18884 1.19366 1.17918 1.68160 1.02091 1.23320 1.35280 1.83940 1.46494 1.13257 1.14929 0.92542 0.89226 0.92873 0.92346 0.88327 0.91550 0.92914 0.89076 0.93383 0.80194 0.89947 0.91258 0.77607 0.86103 0.85110 0.87890 0.91468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.83 8.45 71.98 0.61 -1.22 16 2 C 0.01 0.11 0.99 -52.93 -0.05 0.05 16 3 C -0.15 -1.99 7.54 71.98 0.54 -1.44 16 4 C -0.13 -2.16 8.45 71.98 0.61 -1.56 16 5 C 0.06 1.34 5.78 88.52 0.51 1.85 16 6 N -0.49 -13.45 10.53 -191.44 -2.02 -15.46 16 7 C 0.05 1.46 11.25 83.66 0.94 2.40 16 8 C -0.26 -7.09 5.97 24.64 0.15 -6.94 16 9 C 0.22 6.93 5.41 85.63 0.46 7.39 16 10 N -0.73 -29.76 5.71 -348.70 -1.99 -31.75 16 11 C 0.40 19.49 7.65 133.42 1.02 20.51 16 12 C -0.37 -16.34 9.34 22.73 0.21 -16.13 16 13 C -0.03 -1.30 10.15 22.39 0.23 -1.08 16 14 C -0.34 -17.60 9.83 22.87 0.22 -17.37 16 15 C 0.26 14.93 6.55 40.18 0.26 15.19 16 16 C -0.47 -26.45 9.14 23.46 0.21 -26.24 16 17 H 0.09 4.59 7.85 -2.91 -0.02 4.56 16 18 C 0.03 1.34 5.50 85.29 0.47 1.81 16 19 N -0.75 -41.55 11.46 21.84 0.25 -41.30 16 20 Si 0.99 39.25 29.56 68.60 2.03 41.28 16 21 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 22 H -0.27 -10.23 7.11 99.48 0.71 -9.52 16 23 H -0.26 -9.79 7.11 99.48 0.71 -9.09 16 24 N -0.57 -32.39 7.89 -186.58 -1.47 -33.86 16 25 S 0.16 3.75 21.57 -56.49 -1.22 2.53 16 26 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.09 0.83 8.14 -2.38 -0.02 0.81 16 28 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 29 H 0.06 0.84 7.92 -2.39 -0.02 0.82 16 30 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.07 0.83 7.92 -2.38 -0.02 0.81 16 32 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.18 4.55 8.06 -2.91 -0.02 4.53 16 36 H 0.08 2.39 7.93 -2.39 -0.02 2.37 16 37 H 0.07 2.06 7.90 -2.39 -0.02 2.04 16 38 H 0.39 16.73 8.58 -92.70 -0.80 15.94 16 39 H 0.12 4.55 6.68 -2.91 -0.02 4.54 16 40 H 0.13 4.81 8.06 -2.91 -0.02 4.78 16 41 H 0.10 4.94 8.06 -2.91 -0.02 4.91 16 42 H 0.27 13.78 8.29 -92.71 -0.77 13.02 16 Total: -1.00 -67.19 364.27 2.21 -64.98 By element: Atomic # 1 Polarization: 36.11 SS G_CDS: 0.23 Total: 36.34 kcal Atomic # 6 Polarization: -29.16 SS G_CDS: 6.40 Total: -22.76 kcal Atomic # 7 Polarization: -117.14 SS G_CDS: -5.23 Total: -122.37 kcal Atomic # 14 Polarization: 39.25 SS G_CDS: 2.03 Total: 41.28 kcal Atomic # 16 Polarization: 3.75 SS G_CDS: -1.22 Total: 2.53 kcal Total: -67.19 2.21 -64.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883356291.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.838 kcal (2) G-P(sol) polarization free energy of solvation -67.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds