Wall clock time and date at job start Tue Mar 31 2020 11:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.46904 * 2 1 4 4 C 1.53001 * 109.46757 * 240.00309 * 2 1 3 5 5 C 1.50698 * 109.46910 * 120.00241 * 2 1 3 6 6 C 1.33634 * 126.04325 * 59.98927 * 5 2 1 7 7 N 1.31775 * 114.50608 * 179.78582 * 6 5 2 8 8 C 1.29030 * 117.11931 * 0.46973 * 7 6 5 9 9 C 1.50707 * 124.91367 * 179.81542 * 8 7 6 10 10 N 1.46502 * 109.47220 * 89.69670 * 9 8 7 11 11 C 1.38820 * 120.00010 * 179.97438 * 10 9 8 12 12 C 1.39803 * 119.58295 * 359.97438 * 11 10 9 13 13 C 1.38598 * 119.48881 * 179.97438 * 12 11 10 14 14 C 1.38393 * 118.67941 * 0.25920 * 13 12 11 15 15 C 1.40547 * 119.14706 * 359.47912 * 14 13 12 16 16 C 1.41324 * 119.78258 * 180.25227 * 15 14 13 17 17 H 1.08001 * 119.99729 * 0.27110 * 16 15 14 18 18 C 1.40017 * 120.00293 * 180.27361 * 16 15 14 19 19 N 1.30750 * 120.00116 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00323 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47152 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47083 * 119.99825 * 20 18 16 23 23 H 1.48502 * 109.47241 * 240.00067 * 20 18 16 24 24 N 1.31950 * 119.58604 * 179.97438 * 11 10 9 25 25 S 1.70972 * 110.17089 * 359.54807 * 8 7 6 26 26 H 1.09001 * 109.46949 * 299.99212 * 1 2 3 27 27 H 1.08992 * 109.47285 * 59.99840 * 1 2 3 28 28 H 1.09005 * 109.46938 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47340 * 180.02562 * 3 2 1 30 30 H 1.08999 * 109.47146 * 300.00536 * 3 2 1 31 31 H 1.09007 * 109.47128 * 60.00071 * 3 2 1 32 32 H 1.08995 * 109.47441 * 299.99553 * 4 2 1 33 33 H 1.08992 * 109.47345 * 59.99887 * 4 2 1 34 34 H 1.09005 * 109.46512 * 179.97438 * 4 2 1 35 35 H 1.08004 * 122.74515 * 0.02838 * 6 5 2 36 36 H 1.09003 * 109.47110 * 329.69164 * 9 8 7 37 37 H 1.09003 * 109.46665 * 209.69576 * 9 8 7 38 38 H 0.96996 * 119.99993 * 359.97438 * 10 9 8 39 39 H 1.08000 * 120.25539 * 359.97438 * 12 11 10 40 40 H 1.08002 * 120.65587 * 179.97438 * 13 12 11 41 41 H 1.07994 * 120.42073 * 179.74187 * 14 13 12 42 42 H 0.96995 * 120.00538 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0323 -0.7105 1.2304 6 6 1.7848 -1.9815 1.5606 7 7 2.3431 -2.3719 2.6886 8 6 3.0401 -1.4981 3.3331 9 6 3.7491 -1.7528 4.6384 10 7 5.1066 -2.2344 4.3709 11 6 5.9560 -2.5378 5.4262 12 6 5.5071 -2.3801 6.7407 13 6 6.3566 -2.6841 7.7928 14 6 7.6342 -3.1326 7.5066 15 6 8.0247 -3.2757 6.1641 16 6 9.3244 -3.7378 5.8566 17 1 10.0123 -3.9838 6.6520 18 6 9.7203 -3.8766 4.5207 19 7 8.8873 -3.5791 3.5577 20 14 11.4384 -4.4866 4.1142 21 1 12.1804 -4.7515 5.3730 22 1 11.3443 -5.7389 3.3216 23 1 12.1565 -3.4539 3.3249 24 7 7.1768 -2.9715 5.1759 25 16 3.0491 -0.0116 2.4884 26 1 -0.3633 0.5137 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 3.1299 1.4426 -0.0005 30 1 1.6765 1.9563 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 1.6767 -1.7488 -1.2494 33 1 1.6766 -0.2074 -2.1392 34 1 3.1300 -0.7208 -1.2495 35 1 1.1802 -2.6364 0.9507 36 1 3.2026 -2.5043 5.2082 37 1 3.7984 -0.8270 5.2117 38 1 5.4119 -2.3412 3.4564 39 1 4.5062 -2.0241 6.9349 40 1 6.0295 -2.5688 8.8157 41 1 8.3207 -3.3736 8.3047 42 1 9.1614 -3.6756 2.6323 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000883357681.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:49 Heat of formation + Delta-G solvation = 70.927667 kcal Electronic energy + Delta-G solvation = -23026.206670 eV Core-core repulsion = 19711.575132 eV Total energy + Delta-G solvation = -3314.631538 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.95699 -38.26530 -37.25108 -35.09650 -33.26888 -30.78797 -30.10836 -28.61715 -27.71103 -27.57723 -26.51801 -25.32959 -23.68878 -21.50951 -21.05302 -20.42672 -18.73749 -17.90580 -17.35071 -16.39308 -15.72244 -15.15033 -14.82584 -14.67362 -14.45795 -14.28447 -14.17666 -13.75035 -13.39777 -13.26723 -13.10545 -12.60511 -12.58663 -12.49282 -12.02640 -12.01971 -11.81136 -11.76658 -11.49565 -11.35328 -11.18998 -10.95692 -10.90123 -10.61065 -10.44371 -9.90423 -9.58457 -9.47324 -9.25901 -8.90562 -8.83933 -7.90389 -7.50114 -6.54537 -6.31049 -4.45730 0.63073 1.29885 1.75663 2.79123 2.87856 3.13138 3.17556 3.24767 3.30652 4.00109 4.03641 4.29853 4.43435 4.50922 4.60859 4.85739 4.97273 5.07656 5.22430 5.28821 5.41941 5.43320 5.53634 5.58145 5.65884 5.66439 5.78023 5.83666 5.96227 5.97694 6.08425 6.15091 6.16535 6.56428 6.85051 6.89132 6.93031 7.26016 7.59008 7.75964 7.80602 7.91531 8.16974 8.34480 8.65036 8.81368 9.11806 10.25442 10.41714 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.016663 B = 0.003016 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.931661 B = 9281.286460 C =10449.003547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.011 3.989 3 C -0.151 4.151 4 C -0.138 4.138 5 C -0.214 4.214 6 C 0.035 3.965 7 N -0.456 5.456 8 C 0.033 3.967 9 C 0.220 3.780 10 N -0.733 5.733 11 C 0.414 3.586 12 C -0.368 4.368 13 C -0.031 4.031 14 C -0.315 4.315 15 C 0.292 3.708 16 C -0.433 4.433 17 H 0.084 0.916 18 C 0.071 3.929 19 N -0.715 5.715 20 Si 0.905 3.095 21 H -0.261 1.261 22 H -0.274 1.274 23 H -0.274 1.274 24 N -0.530 5.530 25 S 0.146 5.854 26 H 0.057 0.943 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.170 0.830 36 H 0.082 0.918 37 H 0.073 0.927 38 H 0.397 0.603 39 H 0.090 0.910 40 H 0.093 0.907 41 H 0.095 0.905 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.522 8.707 -9.321 19.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.008 3.992 3 C -0.209 4.209 4 C -0.196 4.196 5 C -0.336 4.336 6 C -0.117 4.117 7 N -0.170 5.170 8 C -0.245 4.245 9 C 0.091 3.909 10 N -0.371 5.371 11 C 0.174 3.826 12 C -0.394 4.394 13 C -0.055 4.055 14 C -0.338 4.338 15 C 0.165 3.835 16 C -0.465 4.465 17 H 0.102 0.898 18 C -0.154 4.154 19 N -0.337 5.337 20 Si 0.729 3.271 21 H -0.184 1.184 22 H -0.200 1.200 23 H -0.200 1.200 24 N -0.251 5.251 25 S 0.403 5.597 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.187 0.813 36 H 0.100 0.900 37 H 0.091 0.909 38 H 0.232 0.768 39 H 0.108 0.892 40 H 0.112 0.888 41 H 0.114 0.886 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -13.969 9.099 -9.804 19.340 hybrid contribution -0.014 -0.888 -0.187 0.908 sum -13.983 8.211 -9.992 19.047 Atomic orbital electron populations 1.21897 0.92992 1.02397 1.02140 1.19008 0.95665 0.94545 0.89997 1.22015 1.01725 0.94555 1.02561 1.21909 1.01692 1.00340 0.95656 1.26090 1.06273 0.98824 1.02405 1.21593 1.02075 0.93772 0.94240 1.66308 1.09415 1.34230 1.07096 1.27119 1.01971 0.93082 1.02338 1.19487 0.83197 1.00059 0.88139 1.43991 1.10486 1.75200 1.07457 1.18415 0.89196 0.89976 0.84995 1.20595 1.01180 1.25264 0.92325 1.20592 0.93561 0.94966 0.96404 1.21541 0.97460 1.17537 0.97257 1.18202 0.91835 0.87239 0.86183 1.19619 0.96906 1.37499 0.92493 0.89808 1.26057 0.98636 0.94221 0.96523 1.70163 1.33816 1.29720 0.99953 0.86325 0.82409 0.78931 0.79430 1.18432 1.19960 1.19965 1.68176 1.00625 1.21795 1.34522 1.84024 1.45390 1.16032 1.14263 0.92343 0.91860 0.92183 0.91922 0.91492 0.92060 0.92153 0.91859 0.92150 0.81278 0.89997 0.90919 0.76782 0.89151 0.88839 0.88650 0.92009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.95 8.35 37.16 0.31 -0.64 16 2 C 0.01 0.09 0.93 -155.66 -0.14 -0.05 16 3 C -0.15 -1.17 7.59 37.16 0.28 -0.88 16 4 C -0.14 -1.08 8.35 37.16 0.31 -0.77 16 5 C -0.21 -2.40 5.15 -35.92 -0.19 -2.59 16 6 C 0.03 0.44 10.62 -19.19 -0.20 0.24 16 7 N -0.46 -7.14 10.54 -11.86 -0.13 -7.26 16 8 C 0.03 0.49 6.76 -13.45 -0.09 0.40 16 9 C 0.22 3.66 5.46 -5.19 -0.03 3.64 16 10 N -0.73 -15.29 5.71 -61.56 -0.35 -15.64 16 11 C 0.41 10.26 7.65 -155.33 -1.19 9.07 16 12 C -0.37 -8.50 9.34 -38.86 -0.36 -8.87 16 13 C -0.03 -0.72 10.15 -39.39 -0.40 -1.12 16 14 C -0.31 -8.03 9.83 -38.65 -0.38 -8.41 16 15 C 0.29 8.23 6.55 -85.00 -0.56 7.67 16 16 C -0.43 -11.85 9.14 -37.74 -0.34 -12.20 16 17 H 0.08 2.15 7.85 -52.49 -0.41 1.74 16 18 C 0.07 1.83 5.50 -17.35 -0.10 1.74 16 19 N -0.71 -19.32 11.46 55.55 0.64 -18.68 16 20 Si 0.90 18.96 29.56 -169.99 -5.02 13.93 16 21 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 22 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 23 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 24 N -0.53 -14.87 7.89 -10.33 -0.08 -14.95 16 25 S 0.15 1.81 21.82 -107.50 -2.35 -0.53 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.41 8.00 -51.93 -0.42 0.00 16 29 H 0.06 0.53 8.00 -51.93 -0.42 0.11 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.47 8.00 -51.93 -0.42 0.06 16 32 H 0.06 0.46 8.00 -51.93 -0.42 0.05 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.17 1.77 8.06 -52.48 -0.42 1.35 16 36 H 0.08 1.38 7.92 -51.93 -0.41 0.97 16 37 H 0.07 1.11 7.92 -51.93 -0.41 0.70 16 38 H 0.40 8.58 8.58 -40.82 -0.35 8.23 16 39 H 0.09 1.83 6.68 -52.49 -0.35 1.48 16 40 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 41 H 0.10 2.26 8.06 -52.49 -0.42 1.83 16 42 H 0.27 6.60 8.29 -40.82 -0.34 6.26 16 LS Contribution 363.77 15.07 5.48 5.48 Total: -1.00 -30.68 363.77 -11.00 -41.68 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: -6.11 Total: 8.74 kcal Atomic # 6 Polarization: -9.70 SS G_CDS: -3.08 Total: -12.77 kcal Atomic # 7 Polarization: -56.61 SS G_CDS: 0.08 Total: -56.54 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -5.02 Total: 13.93 kcal Atomic # 16 Polarization: 1.81 SS G_CDS: -2.35 Total: -0.53 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.68 -11.00 -41.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883357681.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.610 kcal (2) G-P(sol) polarization free energy of solvation -30.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds