Wall clock time and date at job start Tue Mar 31 2020 11:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.46904 * 2 1 4 4 C 1.53001 * 109.46757 * 240.00309 * 2 1 3 5 5 C 1.50698 * 109.46910 * 120.00241 * 2 1 3 6 6 C 1.33634 * 126.04325 * 59.98927 * 5 2 1 7 7 N 1.31775 * 114.50608 * 179.78582 * 6 5 2 8 8 C 1.29030 * 117.11931 * 0.46973 * 7 6 5 9 9 C 1.50707 * 124.91367 * 179.81542 * 8 7 6 10 10 N 1.46502 * 109.47220 * 89.69670 * 9 8 7 11 11 C 1.38820 * 120.00010 * 179.97438 * 10 9 8 12 12 C 1.39803 * 119.58295 * 359.97438 * 11 10 9 13 13 C 1.38598 * 119.48881 * 179.97438 * 12 11 10 14 14 C 1.38393 * 118.67941 * 0.25920 * 13 12 11 15 15 C 1.40547 * 119.14706 * 359.47912 * 14 13 12 16 16 C 1.41324 * 119.78258 * 180.25227 * 15 14 13 17 17 H 1.08001 * 119.99729 * 0.27110 * 16 15 14 18 18 C 1.40017 * 120.00293 * 180.27361 * 16 15 14 19 19 N 1.30750 * 120.00116 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00323 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47152 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47083 * 119.99825 * 20 18 16 23 23 H 1.48502 * 109.47241 * 240.00067 * 20 18 16 24 24 N 1.31950 * 119.58604 * 179.97438 * 11 10 9 25 25 S 1.70972 * 110.17089 * 359.54807 * 8 7 6 26 26 H 1.09001 * 109.46949 * 299.99212 * 1 2 3 27 27 H 1.08992 * 109.47285 * 59.99840 * 1 2 3 28 28 H 1.09005 * 109.46938 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47340 * 180.02562 * 3 2 1 30 30 H 1.08999 * 109.47146 * 300.00536 * 3 2 1 31 31 H 1.09007 * 109.47128 * 60.00071 * 3 2 1 32 32 H 1.08995 * 109.47441 * 299.99553 * 4 2 1 33 33 H 1.08992 * 109.47345 * 59.99887 * 4 2 1 34 34 H 1.09005 * 109.46512 * 179.97438 * 4 2 1 35 35 H 1.08004 * 122.74515 * 0.02838 * 6 5 2 36 36 H 1.09003 * 109.47110 * 329.69164 * 9 8 7 37 37 H 1.09003 * 109.46665 * 209.69576 * 9 8 7 38 38 H 0.96996 * 119.99993 * 359.97438 * 10 9 8 39 39 H 1.08000 * 120.25539 * 359.97438 * 12 11 10 40 40 H 1.08002 * 120.65587 * 179.97438 * 13 12 11 41 41 H 1.07994 * 120.42073 * 179.74187 * 14 13 12 42 42 H 0.96995 * 120.00538 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0323 -0.7105 1.2304 6 6 1.7848 -1.9815 1.5606 7 7 2.3431 -2.3719 2.6886 8 6 3.0401 -1.4981 3.3331 9 6 3.7491 -1.7528 4.6384 10 7 5.1066 -2.2344 4.3709 11 6 5.9560 -2.5378 5.4262 12 6 5.5071 -2.3801 6.7407 13 6 6.3566 -2.6841 7.7928 14 6 7.6342 -3.1326 7.5066 15 6 8.0247 -3.2757 6.1641 16 6 9.3244 -3.7378 5.8566 17 1 10.0123 -3.9838 6.6520 18 6 9.7203 -3.8766 4.5207 19 7 8.8873 -3.5791 3.5577 20 14 11.4384 -4.4866 4.1142 21 1 12.1804 -4.7515 5.3730 22 1 11.3443 -5.7389 3.3216 23 1 12.1565 -3.4539 3.3249 24 7 7.1768 -2.9715 5.1759 25 16 3.0491 -0.0116 2.4884 26 1 -0.3633 0.5137 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 3.1299 1.4426 -0.0005 30 1 1.6765 1.9563 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 1.6767 -1.7488 -1.2494 33 1 1.6766 -0.2074 -2.1392 34 1 3.1300 -0.7208 -1.2495 35 1 1.1802 -2.6364 0.9507 36 1 3.2026 -2.5043 5.2082 37 1 3.7984 -0.8270 5.2117 38 1 5.4119 -2.3412 3.4564 39 1 4.5062 -2.0241 6.9349 40 1 6.0295 -2.5688 8.8157 41 1 8.3207 -3.3736 8.3047 42 1 9.1614 -3.6756 2.6323 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000883357681.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:48 Heat of formation + Delta-G solvation = 53.900860 kcal Electronic energy + Delta-G solvation = -23026.945007 eV Core-core repulsion = 19711.575132 eV Total energy + Delta-G solvation = -3315.369876 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.99383 -40.10271 -38.08949 -36.70275 -35.13815 -32.48610 -31.79098 -30.08987 -28.35112 -28.15195 -27.82785 -27.23136 -24.87843 -23.36990 -22.33591 -21.88436 -19.80149 -19.24520 -18.89550 -18.03418 -16.88466 -16.58192 -16.41660 -16.11534 -15.60584 -15.58017 -15.11879 -14.96959 -14.73481 -14.68911 -14.51275 -14.04175 -13.71740 -13.50734 -13.19136 -13.15997 -12.87693 -12.72749 -12.62259 -12.61332 -12.57609 -12.26571 -12.22907 -11.98897 -11.72376 -11.63104 -11.34687 -10.74447 -10.58957 -10.27275 -9.85043 -9.84598 -9.45788 -8.37064 -8.23265 -6.48090 -0.41740 0.28968 0.73160 1.04678 1.34204 1.41143 1.56568 1.56856 1.71498 2.24808 2.67852 2.92015 3.07442 3.57198 3.83905 3.93750 3.98168 4.05013 4.30723 4.36434 4.39887 4.48973 4.54737 4.73579 4.75370 4.77096 4.83996 4.96905 4.97544 4.98347 5.00925 5.01791 5.08185 5.14231 5.26126 5.34280 5.35758 5.38732 5.70006 5.95702 6.03716 6.21182 6.49265 6.70437 6.78200 6.88480 7.16969 8.32561 8.50717 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.016663 B = 0.003016 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.931661 B = 9281.286460 C =10449.003547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.009 3.991 3 C -0.152 4.152 4 C -0.137 4.137 5 C -0.195 4.195 6 C 0.015 3.985 7 N -0.481 5.481 8 C 0.000 4.000 9 C 0.223 3.777 10 N -0.729 5.729 11 C 0.397 3.603 12 C -0.365 4.365 13 C -0.028 4.028 14 C -0.340 4.340 15 C 0.258 3.742 16 C -0.469 4.469 17 H 0.088 0.912 18 C 0.025 3.975 19 N -0.753 5.753 20 Si 0.987 3.013 21 H -0.254 1.254 22 H -0.268 1.268 23 H -0.266 1.266 24 N -0.565 5.565 25 S 0.172 5.828 26 H 0.054 0.946 27 H 0.083 0.917 28 H 0.061 0.939 29 H 0.052 0.948 30 H 0.087 0.913 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.084 0.916 34 H 0.045 0.955 35 H 0.189 0.811 36 H 0.078 0.922 37 H 0.088 0.912 38 H 0.390 0.610 39 H 0.121 0.879 40 H 0.133 0.867 41 H 0.104 0.896 42 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.600 9.691 -10.321 21.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.006 3.994 3 C -0.210 4.210 4 C -0.195 4.195 5 C -0.317 4.317 6 C -0.136 4.136 7 N -0.196 5.196 8 C -0.276 4.276 9 C 0.095 3.905 10 N -0.365 5.365 11 C 0.156 3.844 12 C -0.391 4.391 13 C -0.052 4.052 14 C -0.363 4.363 15 C 0.131 3.869 16 C -0.501 4.501 17 H 0.106 0.894 18 C -0.197 4.197 19 N -0.376 5.376 20 Si 0.807 3.193 21 H -0.177 1.177 22 H -0.193 1.193 23 H -0.191 1.191 24 N -0.288 5.288 25 S 0.428 5.572 26 H 0.073 0.927 27 H 0.102 0.898 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.106 0.894 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.103 0.897 34 H 0.064 0.936 35 H 0.206 0.794 36 H 0.096 0.904 37 H 0.106 0.894 38 H 0.224 0.776 39 H 0.139 0.861 40 H 0.150 0.850 41 H 0.122 0.878 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -15.092 10.099 -10.785 21.121 hybrid contribution 0.131 -1.101 0.066 1.111 sum -14.962 8.998 -10.719 20.487 Atomic orbital electron populations 1.21893 0.91429 1.02841 1.02990 1.19209 0.96799 0.94688 0.88723 1.22044 1.01115 0.94189 1.03647 1.21921 1.00805 1.00703 0.96102 1.26583 1.04217 0.98381 1.02489 1.21874 1.02917 0.94797 0.93977 1.66266 1.09772 1.35353 1.08201 1.26790 1.03442 0.94708 1.02645 1.19549 0.81008 1.00339 0.89591 1.44143 1.11601 1.74530 1.06263 1.18846 0.89018 0.89737 0.86765 1.20965 1.02479 1.24016 0.91620 1.21025 0.92544 0.93237 0.98409 1.21713 0.98990 1.19015 0.96626 1.18689 0.92633 0.88031 0.87520 1.19970 0.97376 1.39086 0.93706 0.89411 1.26983 1.03075 0.93847 0.95775 1.70270 1.36103 1.30714 1.00472 0.85102 0.76567 0.78367 0.79269 1.17715 1.19338 1.19129 1.68137 1.02073 1.23225 1.35374 1.83882 1.45063 1.14216 1.14014 0.92705 0.89832 0.92002 0.92922 0.89367 0.92104 0.92042 0.89694 0.93558 0.79434 0.90385 0.89364 0.77644 0.86063 0.84963 0.87758 0.91492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.49 8.35 71.98 0.60 -0.89 16 2 C 0.01 0.13 0.93 -52.93 -0.05 0.08 16 3 C -0.15 -2.00 7.59 71.98 0.55 -1.45 16 4 C -0.14 -1.84 8.35 71.98 0.60 -1.24 16 5 C -0.19 -4.11 5.15 24.64 0.13 -3.99 16 6 C 0.02 0.37 10.62 83.66 0.89 1.26 16 7 N -0.48 -15.00 10.54 -191.45 -2.02 -17.02 16 8 C 0.00 0.01 6.76 88.52 0.60 0.61 16 9 C 0.22 7.39 5.46 85.63 0.47 7.86 16 10 N -0.73 -31.00 5.71 -348.69 -1.99 -32.99 16 11 C 0.40 19.99 7.65 133.42 1.02 21.01 16 12 C -0.37 -16.61 9.34 22.73 0.21 -16.40 16 13 C -0.03 -1.27 10.15 22.39 0.23 -1.05 16 14 C -0.34 -17.61 9.83 22.87 0.22 -17.38 16 15 C 0.26 15.03 6.55 40.18 0.26 15.30 16 16 C -0.47 -26.54 9.14 23.46 0.21 -26.33 16 17 H 0.09 4.66 7.85 -2.91 -0.02 4.63 16 18 C 0.02 1.30 5.50 85.29 0.47 1.77 16 19 N -0.75 -42.00 11.46 21.84 0.25 -41.75 16 20 Si 0.99 39.52 29.56 68.60 2.03 41.55 16 21 H -0.25 -9.75 7.11 99.48 0.71 -9.05 16 22 H -0.27 -10.40 7.11 99.48 0.71 -9.69 16 23 H -0.27 -10.23 7.11 99.48 0.71 -9.53 16 24 N -0.57 -32.82 7.89 -186.59 -1.47 -34.29 16 25 S 0.17 4.13 21.82 -56.49 -1.23 2.90 16 26 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.06 0.69 8.00 -2.38 -0.02 0.67 16 29 H 0.05 0.80 8.00 -2.39 -0.02 0.78 16 30 H 0.09 0.80 8.14 -2.39 -0.02 0.79 16 31 H 0.06 0.81 8.00 -2.38 -0.02 0.79 16 32 H 0.06 0.81 8.00 -2.39 -0.02 0.79 16 33 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 35 H 0.19 3.69 8.06 -2.91 -0.02 3.67 16 36 H 0.08 2.62 7.92 -2.39 -0.02 2.61 16 37 H 0.09 2.62 7.92 -2.39 -0.02 2.60 16 38 H 0.39 17.47 8.58 -92.71 -0.80 16.67 16 39 H 0.12 4.67 6.68 -2.91 -0.02 4.65 16 40 H 0.13 4.89 8.06 -2.91 -0.02 4.87 16 41 H 0.10 5.01 8.06 -2.91 -0.02 4.99 16 42 H 0.27 13.87 8.29 -92.71 -0.77 13.10 16 Total: -1.00 -68.56 363.77 2.21 -66.35 By element: Atomic # 1 Polarization: 35.87 SS G_CDS: 0.23 Total: 36.10 kcal Atomic # 6 Polarization: -27.25 SS G_CDS: 6.41 Total: -20.84 kcal Atomic # 7 Polarization: -120.82 SS G_CDS: -5.23 Total: -126.05 kcal Atomic # 14 Polarization: 39.52 SS G_CDS: 2.03 Total: 41.55 kcal Atomic # 16 Polarization: 4.13 SS G_CDS: -1.23 Total: 2.90 kcal Total: -68.56 2.21 -66.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883357681.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.253 kcal (2) G-P(sol) polarization free energy of solvation -68.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds