Wall clock time and date at job start Tue Mar 31 2020 11:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00297 * 2 1 3 5 5 C 1.50698 * 109.47184 * 240.00631 * 2 1 3 6 6 C 1.33637 * 122.75318 * 74.99683 * 5 2 1 7 7 S 1.76195 * 107.92590 * 180.02562 * 6 5 2 8 8 C 1.70974 * 90.28433 * 359.97438 * 7 6 5 9 9 C 1.50705 * 124.91990 * 180.02562 * 8 7 6 10 10 N 1.46500 * 109.47087 * 270.02805 * 9 8 7 11 11 C 1.38816 * 120.00147 * 180.02562 * 10 9 8 12 12 C 1.39803 * 119.58311 * 359.72300 * 11 10 9 13 13 C 1.38594 * 119.49183 * 179.79473 * 12 11 10 14 14 C 1.38394 * 118.67879 * 0.47611 * 13 12 11 15 15 C 1.40552 * 119.15062 * 359.74798 * 14 13 12 16 16 C 1.41312 * 119.78624 * 180.02562 * 15 14 13 17 17 H 1.08000 * 120.00116 * 0.02562 * 16 15 14 18 18 C 1.40027 * 120.00124 * 180.02562 * 16 15 14 19 19 N 1.30735 * 119.99937 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99981 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47195 * 89.99809 * 20 18 16 22 22 H 1.48500 * 109.47261 * 210.00210 * 20 18 16 23 23 H 1.48508 * 109.47018 * 330.00074 * 20 18 16 24 24 N 1.31956 * 119.59117 * 180.02562 * 11 10 9 25 25 N 1.29030 * 110.16479 * 359.73839 * 8 7 6 26 26 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 27 27 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 29 29 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 30 30 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 31 31 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 32 32 H 1.09001 * 109.47375 * 59.99966 * 4 2 1 33 33 H 1.09002 * 109.46777 * 180.02562 * 4 2 1 34 34 H 1.09000 * 109.47140 * 299.99948 * 4 2 1 35 35 H 1.08004 * 126.03480 * 359.97438 * 6 5 2 36 36 H 1.08992 * 109.46739 * 30.02490 * 9 8 7 37 37 H 1.09000 * 109.46851 * 150.02616 * 9 8 7 38 38 H 0.97005 * 120.00042 * 359.97438 * 10 9 8 39 39 H 1.08001 * 120.25430 * 359.97438 * 12 11 10 40 40 H 1.07998 * 120.66107 * 180.22357 * 13 12 11 41 41 H 1.07996 * 120.42492 * 179.77097 * 14 13 12 42 42 H 0.97001 * 120.00027 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 2.0324 -0.7103 -1.2305 6 6 1.9991 -0.1593 -2.4476 7 16 2.6763 -1.3201 -3.5871 8 6 2.9375 -2.4306 -2.3136 9 6 3.5438 -3.8009 -2.4747 10 7 2.4826 -4.7771 -2.7337 11 6 2.8006 -6.1158 -2.9171 12 6 4.1371 -6.5220 -2.8586 13 6 4.4520 -7.8598 -3.0377 14 6 3.4265 -8.7568 -3.2805 15 6 2.1032 -8.2861 -3.3324 16 6 1.0456 -9.1904 -3.5790 17 1 1.2555 -10.2395 -3.7264 18 6 -0.2744 -8.7263 -3.6321 19 7 -0.5284 -7.4563 -3.4542 20 14 -1.6723 -9.9216 -3.9588 21 1 -2.1757 -10.4590 -2.6692 22 1 -2.7722 -9.2161 -4.6642 23 1 -1.1801 -11.0401 -4.8027 24 7 1.8384 -6.9881 -3.1504 25 7 2.5460 -1.9233 -1.1937 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.6766 1.9563 0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.6767 -1.7490 1.2492 33 1 3.1301 -0.7209 1.2493 34 1 1.6767 -0.2075 2.1392 35 1 1.6227 0.8236 -2.6900 36 1 4.2423 -3.7930 -3.3114 37 1 4.0734 -4.0735 -1.5619 38 1 1.5576 -4.4881 -2.7764 39 1 4.9178 -5.7994 -2.6723 40 1 5.4777 -8.1949 -2.9927 41 1 3.6403 -9.8051 -3.4279 42 1 -1.4428 -7.1347 -3.4914 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000883357789.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:53 Heat of formation + Delta-G solvation = 73.369220 kcal Electronic energy + Delta-G solvation = -23233.171945 eV Core-core repulsion = 19918.646281 eV Total energy + Delta-G solvation = -3314.525664 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.33944 -38.27094 -36.53723 -34.96428 -33.26405 -30.83360 -30.17842 -28.95896 -27.58072 -27.42941 -26.23075 -25.33328 -23.84839 -21.57259 -20.85809 -20.22867 -19.16718 -17.47747 -17.31001 -16.41244 -15.71445 -15.18884 -14.86254 -14.64765 -14.44686 -14.19612 -14.00879 -13.62919 -13.50936 -13.13764 -12.96340 -12.54554 -12.43642 -12.28327 -12.14511 -11.93374 -11.80506 -11.76299 -11.18882 -11.11015 -11.04566 -10.97512 -10.86323 -10.62524 -10.44784 -9.93052 -9.61942 -9.49442 -9.40550 -8.91319 -8.78985 -7.90996 -7.50656 -6.55425 -6.31533 -4.46299 0.63790 1.34878 1.73898 2.72902 2.88655 3.12423 3.15587 3.24200 3.30755 3.88785 3.99752 4.32317 4.59980 4.71626 4.82274 4.85267 5.08766 5.12385 5.29003 5.39552 5.50169 5.58571 5.64061 5.73562 5.79275 5.81832 5.84427 5.91238 6.08430 6.14233 6.15324 6.18145 6.34130 6.55698 6.84324 6.88422 6.92352 7.25444 7.58314 7.76648 7.79898 7.90944 8.15898 8.33714 8.64010 8.80714 9.11132 10.24878 10.41142 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.015033 B = 0.003181 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.151358 B = 8800.802862 C = 9691.702359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.005 3.995 3 C -0.138 4.138 4 C -0.130 4.130 5 C 0.080 3.920 6 C -0.264 4.264 7 S 0.136 5.864 8 C 0.044 3.956 9 C 0.220 3.780 10 N -0.733 5.733 11 C 0.414 3.586 12 C -0.368 4.368 13 C -0.031 4.031 14 C -0.315 4.315 15 C 0.293 3.707 16 C -0.433 4.433 17 H 0.083 0.917 18 C 0.071 3.929 19 N -0.715 5.715 20 Si 0.905 3.095 21 H -0.270 1.270 22 H -0.278 1.278 23 H -0.262 1.262 24 N -0.530 5.530 25 N -0.450 5.450 26 H 0.055 0.945 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.055 0.945 34 H 0.052 0.948 35 H 0.174 0.826 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.397 0.603 39 H 0.090 0.910 40 H 0.093 0.907 41 H 0.095 0.905 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.683 17.319 3.490 17.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.002 3.998 3 C -0.196 4.196 4 C -0.187 4.187 5 C -0.053 4.053 6 C -0.403 4.403 7 S 0.392 5.608 8 C -0.234 4.234 9 C 0.091 3.909 10 N -0.371 5.371 11 C 0.174 3.826 12 C -0.394 4.394 13 C -0.055 4.055 14 C -0.338 4.338 15 C 0.166 3.834 16 C -0.465 4.465 17 H 0.101 0.899 18 C -0.154 4.154 19 N -0.336 5.336 20 Si 0.729 3.271 21 H -0.195 1.195 22 H -0.203 1.203 23 H -0.186 1.186 24 N -0.251 5.251 25 N -0.165 5.165 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.191 0.809 36 H 0.091 0.909 37 H 0.100 0.900 38 H 0.232 0.768 39 H 0.108 0.892 40 H 0.112 0.888 41 H 0.113 0.887 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.116 17.443 2.842 17.799 hybrid contribution -0.397 -0.165 0.556 0.703 sum 1.718 17.278 3.399 17.693 Atomic orbital electron populations 1.21891 0.93236 1.02599 1.01863 1.19158 0.95534 0.94072 0.90992 1.21916 1.01320 0.94338 1.02002 1.21710 1.01216 1.00913 0.94902 1.20168 0.99762 0.90375 0.94968 1.26807 1.12046 1.05675 0.95780 1.84095 1.55398 1.07524 1.13822 1.27126 1.03446 1.01893 0.90967 1.19490 0.89811 0.79736 1.01835 1.43979 1.07767 1.03840 1.81544 1.18407 0.89481 0.84629 0.90041 1.20591 0.94551 0.96466 1.27771 1.20589 0.96911 0.92944 0.95063 1.21543 0.94306 0.98465 1.19498 1.18187 0.90529 0.87950 0.86749 1.19584 0.90233 0.95043 1.41677 0.89856 1.26052 1.00200 0.95396 0.93757 1.70148 1.20337 1.14016 1.29142 0.86382 0.80330 0.81084 0.79291 1.19502 1.20269 1.18587 1.68172 1.31009 1.01985 1.23956 1.66113 1.11986 1.10821 1.27558 0.92561 0.92084 0.91910 0.91859 0.92410 0.92501 0.91491 0.92558 0.92852 0.80903 0.90855 0.89953 0.76770 0.89162 0.88849 0.88660 0.91948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 8.43 37.16 0.31 -1.02 16 2 C 0.01 0.06 0.90 -155.66 -0.14 -0.08 16 3 C -0.14 -1.11 8.13 37.16 0.30 -0.81 16 4 C -0.13 -1.42 7.91 37.16 0.29 -1.13 16 5 C 0.08 1.02 5.41 -84.23 -0.46 0.57 16 6 C -0.26 -2.97 10.40 29.12 0.30 -2.66 16 7 S 0.14 1.67 23.18 -107.50 -2.49 -0.82 16 8 C 0.04 0.65 6.76 -13.45 -0.09 0.56 16 9 C 0.22 3.59 5.46 -5.19 -0.03 3.56 16 10 N -0.73 -15.07 5.71 -61.57 -0.35 -15.42 16 11 C 0.41 10.17 7.65 -155.33 -1.19 8.99 16 12 C -0.37 -8.44 9.34 -38.87 -0.36 -8.81 16 13 C -0.03 -0.71 10.15 -39.39 -0.40 -1.11 16 14 C -0.32 -8.00 9.83 -38.65 -0.38 -8.38 16 15 C 0.29 8.21 6.55 -85.00 -0.56 7.65 16 16 C -0.43 -11.82 9.14 -37.74 -0.34 -12.16 16 17 H 0.08 2.13 7.85 -52.49 -0.41 1.72 16 18 C 0.07 1.84 5.50 -17.35 -0.10 1.74 16 19 N -0.71 -19.24 11.46 55.55 0.64 -18.60 16 20 Si 0.90 18.90 29.56 -169.99 -5.02 13.87 16 21 H -0.27 -5.58 7.11 56.52 0.40 -5.17 16 22 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 23 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 24 N -0.53 -14.78 7.89 -10.33 -0.08 -14.86 16 25 N -0.45 -6.84 9.55 -8.06 -0.08 -6.91 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.40 7.15 -51.93 -0.37 0.03 16 32 H 0.07 0.87 7.98 -51.93 -0.41 0.45 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.17 1.47 7.31 -52.48 -0.38 1.09 16 36 H 0.07 1.10 7.91 -51.93 -0.41 0.69 16 37 H 0.08 1.36 7.93 -51.93 -0.41 0.95 16 38 H 0.40 8.47 8.58 -40.82 -0.35 8.12 16 39 H 0.09 1.81 6.68 -52.49 -0.35 1.46 16 40 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 41 H 0.10 2.25 8.06 -52.49 -0.42 1.82 16 42 H 0.27 6.61 8.29 -40.82 -0.34 6.27 16 LS Contribution 363.01 15.07 5.47 5.47 Total: -1.00 -30.20 363.01 -10.79 -41.00 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: -6.04 Total: 9.38 kcal Atomic # 6 Polarization: -10.27 SS G_CDS: -2.83 Total: -13.10 kcal Atomic # 7 Polarization: -55.93 SS G_CDS: 0.13 Total: -55.80 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.02 Total: 13.87 kcal Atomic # 16 Polarization: 1.67 SS G_CDS: -2.49 Total: -0.82 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.20 -10.79 -41.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883357789.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.366 kcal (2) G-P(sol) polarization free energy of solvation -30.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds