Wall clock time and date at job start Tue Mar 31 2020 11:32:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00297 * 2 1 3 5 5 C 1.50698 * 109.47184 * 240.00631 * 2 1 3 6 6 C 1.33637 * 122.75318 * 74.99683 * 5 2 1 7 7 S 1.76195 * 107.92590 * 180.02562 * 6 5 2 8 8 C 1.70974 * 90.28433 * 359.97438 * 7 6 5 9 9 C 1.50705 * 124.91990 * 180.02562 * 8 7 6 10 10 N 1.46500 * 109.47087 * 270.02805 * 9 8 7 11 11 C 1.38816 * 120.00147 * 180.02562 * 10 9 8 12 12 C 1.39803 * 119.58311 * 359.72300 * 11 10 9 13 13 C 1.38594 * 119.49183 * 179.79473 * 12 11 10 14 14 C 1.38394 * 118.67879 * 0.47611 * 13 12 11 15 15 C 1.40552 * 119.15062 * 359.74798 * 14 13 12 16 16 C 1.41312 * 119.78624 * 180.02562 * 15 14 13 17 17 H 1.08000 * 120.00116 * 0.02562 * 16 15 14 18 18 C 1.40027 * 120.00124 * 180.02562 * 16 15 14 19 19 N 1.30735 * 119.99937 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99981 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47195 * 89.99809 * 20 18 16 22 22 H 1.48500 * 109.47261 * 210.00210 * 20 18 16 23 23 H 1.48508 * 109.47018 * 330.00074 * 20 18 16 24 24 N 1.31956 * 119.59117 * 180.02562 * 11 10 9 25 25 N 1.29030 * 110.16479 * 359.73839 * 8 7 6 26 26 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 27 27 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 29 29 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 30 30 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 31 31 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 32 32 H 1.09001 * 109.47375 * 59.99966 * 4 2 1 33 33 H 1.09002 * 109.46777 * 180.02562 * 4 2 1 34 34 H 1.09000 * 109.47140 * 299.99948 * 4 2 1 35 35 H 1.08004 * 126.03480 * 359.97438 * 6 5 2 36 36 H 1.08992 * 109.46739 * 30.02490 * 9 8 7 37 37 H 1.09000 * 109.46851 * 150.02616 * 9 8 7 38 38 H 0.97005 * 120.00042 * 359.97438 * 10 9 8 39 39 H 1.08001 * 120.25430 * 359.97438 * 12 11 10 40 40 H 1.07998 * 120.66107 * 180.22357 * 13 12 11 41 41 H 1.07996 * 120.42492 * 179.77097 * 14 13 12 42 42 H 0.97001 * 120.00027 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 2.0324 -0.7103 -1.2305 6 6 1.9991 -0.1593 -2.4476 7 16 2.6763 -1.3201 -3.5871 8 6 2.9375 -2.4306 -2.3136 9 6 3.5438 -3.8009 -2.4747 10 7 2.4826 -4.7771 -2.7337 11 6 2.8006 -6.1158 -2.9171 12 6 4.1371 -6.5220 -2.8586 13 6 4.4520 -7.8598 -3.0377 14 6 3.4265 -8.7568 -3.2805 15 6 2.1032 -8.2861 -3.3324 16 6 1.0456 -9.1904 -3.5790 17 1 1.2555 -10.2395 -3.7264 18 6 -0.2744 -8.7263 -3.6321 19 7 -0.5284 -7.4563 -3.4542 20 14 -1.6723 -9.9216 -3.9588 21 1 -2.1757 -10.4590 -2.6692 22 1 -2.7722 -9.2161 -4.6642 23 1 -1.1801 -11.0401 -4.8027 24 7 1.8384 -6.9881 -3.1504 25 7 2.5460 -1.9233 -1.1937 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.6766 1.9563 0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.6767 -1.7490 1.2492 33 1 3.1301 -0.7209 1.2493 34 1 1.6767 -0.2075 2.1392 35 1 1.6227 0.8236 -2.6900 36 1 4.2423 -3.7930 -3.3114 37 1 4.0734 -4.0735 -1.5619 38 1 1.5576 -4.4881 -2.7764 39 1 4.9178 -5.7994 -2.6723 40 1 5.4777 -8.1949 -2.9927 41 1 3.6403 -9.8051 -3.4279 42 1 -1.4428 -7.1347 -3.4914 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000883357789.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:52 Heat of formation + Delta-G solvation = 56.619122 kcal Electronic energy + Delta-G solvation = -23233.898284 eV Core-core repulsion = 19918.646281 eV Total energy + Delta-G solvation = -3315.252003 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.33061 -40.11891 -37.59906 -36.45411 -35.11459 -32.48067 -31.82036 -30.39374 -28.66965 -28.15536 -27.42281 -27.18192 -24.94589 -23.40136 -22.41972 -21.58407 -20.13239 -19.28858 -18.53482 -17.92586 -16.92149 -16.59595 -16.43501 -16.13611 -15.68510 -15.57611 -15.13271 -14.96021 -14.75384 -14.50859 -14.38992 -14.02571 -13.64277 -13.44406 -13.19939 -13.08569 -12.90917 -12.85020 -12.72725 -12.58495 -12.56886 -12.23387 -11.91007 -11.86116 -11.74608 -11.69312 -11.33303 -10.74410 -10.61661 -10.41358 -9.84936 -9.77144 -9.45554 -8.36843 -8.23148 -6.48051 -0.39172 0.35298 0.74449 1.05505 1.34329 1.41039 1.54252 1.58473 1.69125 2.24773 2.66450 2.92010 2.97571 3.66075 3.87653 4.02749 4.05307 4.17070 4.29659 4.35023 4.37510 4.48803 4.54691 4.75719 4.77128 4.80395 4.87177 4.93392 4.97102 5.00306 5.00946 5.03050 5.08387 5.16365 5.33055 5.34521 5.39906 5.46065 5.70059 5.95769 6.03809 6.20914 6.49474 6.74267 6.79272 6.88567 7.17100 8.32696 8.50668 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.015033 B = 0.003181 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.151358 B = 8800.802862 C = 9691.702359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.004 3.996 3 C -0.133 4.133 4 C -0.126 4.126 5 C 0.058 3.942 6 C -0.247 4.247 7 S 0.167 5.833 8 C 0.012 3.988 9 C 0.223 3.777 10 N -0.728 5.728 11 C 0.397 3.603 12 C -0.365 4.365 13 C -0.028 4.028 14 C -0.341 4.341 15 C 0.259 3.741 16 C -0.470 4.470 17 H 0.088 0.912 18 C 0.025 3.975 19 N -0.753 5.753 20 Si 0.986 3.014 21 H -0.264 1.264 22 H -0.269 1.269 23 H -0.255 1.255 24 N -0.566 5.566 25 N -0.473 5.473 26 H 0.066 0.934 27 H 0.034 0.966 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.052 0.948 31 H 0.071 0.929 32 H 0.037 0.963 33 H 0.046 0.954 34 H 0.073 0.927 35 H 0.207 0.793 36 H 0.089 0.911 37 H 0.078 0.922 38 H 0.390 0.610 39 H 0.121 0.879 40 H 0.132 0.868 41 H 0.104 0.896 42 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.669 19.242 3.277 19.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.001 3.999 3 C -0.190 4.190 4 C -0.184 4.184 5 C -0.074 4.074 6 C -0.386 4.386 7 S 0.422 5.578 8 C -0.265 4.265 9 C 0.096 3.904 10 N -0.365 5.365 11 C 0.157 3.843 12 C -0.391 4.391 13 C -0.052 4.052 14 C -0.364 4.364 15 C 0.132 3.868 16 C -0.502 4.502 17 H 0.106 0.894 18 C -0.196 4.196 19 N -0.375 5.375 20 Si 0.806 3.194 21 H -0.189 1.189 22 H -0.194 1.194 23 H -0.179 1.179 24 N -0.288 5.288 25 N -0.189 5.189 26 H 0.085 0.915 27 H 0.053 0.947 28 H 0.100 0.900 29 H 0.098 0.902 30 H 0.071 0.929 31 H 0.090 0.910 32 H 0.056 0.944 33 H 0.065 0.935 34 H 0.092 0.908 35 H 0.223 0.777 36 H 0.107 0.893 37 H 0.095 0.905 38 H 0.224 0.776 39 H 0.139 0.861 40 H 0.150 0.850 41 H 0.122 0.878 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.144 19.396 2.639 19.692 hybrid contribution -0.295 -0.603 0.657 0.939 sum 1.849 18.793 3.296 19.169 Atomic orbital electron populations 1.21879 0.92720 1.01320 1.03383 1.19290 0.95888 0.95234 0.89510 1.21888 1.00998 0.92556 1.03587 1.21668 1.00572 0.99662 0.96498 1.20579 1.00341 0.89962 0.96553 1.27232 1.10115 1.06442 0.94802 1.83931 1.54577 1.06640 1.12632 1.26805 1.05494 1.01984 0.92246 1.19543 0.88919 0.79897 1.02082 1.44127 1.08484 1.03250 1.80632 1.18837 0.90006 0.85703 0.89763 1.20960 0.94652 0.97244 1.26222 1.21020 0.98287 0.92634 0.93274 1.21714 0.94182 0.99491 1.21020 1.18671 0.92030 0.88580 0.87522 1.19944 0.91475 0.95407 1.43395 0.89426 1.26971 1.02485 0.97268 0.92885 1.70258 1.21217 1.16015 1.30017 0.85166 0.76480 0.78466 0.79275 1.18934 1.19360 1.17851 1.68135 1.32725 1.02565 1.25385 1.66092 1.12201 1.12189 1.28371 0.91464 0.94719 0.89986 0.90228 0.92897 0.91018 0.94375 0.93463 0.90783 0.77651 0.89293 0.90451 0.77622 0.86072 0.85010 0.87796 0.91482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 8.43 71.98 0.61 -1.80 16 2 C 0.00 0.07 0.90 -52.93 -0.05 0.02 16 3 C -0.13 -1.75 8.13 71.98 0.58 -1.16 16 4 C -0.13 -2.72 7.91 71.98 0.57 -2.15 16 5 C 0.06 1.42 5.41 41.52 0.22 1.64 16 6 C -0.25 -4.95 10.40 66.78 0.69 -4.26 16 7 S 0.17 3.85 23.18 -56.49 -1.31 2.54 16 8 C 0.01 0.34 6.76 88.52 0.60 0.94 16 9 C 0.22 7.27 5.46 85.63 0.47 7.73 16 10 N -0.73 -30.61 5.71 -348.72 -1.99 -32.60 16 11 C 0.40 19.89 7.65 133.42 1.02 20.91 16 12 C -0.37 -16.52 9.34 22.73 0.21 -16.31 16 13 C -0.03 -1.27 10.15 22.39 0.23 -1.04 16 14 C -0.34 -17.61 9.83 22.87 0.22 -17.38 16 15 C 0.26 15.03 6.55 40.18 0.26 15.30 16 16 C -0.47 -26.54 9.14 23.46 0.21 -26.33 16 17 H 0.09 4.63 7.85 -2.91 -0.02 4.61 16 18 C 0.03 1.35 5.50 85.29 0.47 1.81 16 19 N -0.75 -41.87 11.46 21.84 0.25 -41.62 16 20 Si 0.99 39.43 29.56 68.60 2.03 41.45 16 21 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 22 H -0.27 -10.26 7.11 99.48 0.71 -9.55 16 23 H -0.25 -9.79 7.11 99.48 0.71 -9.08 16 24 N -0.57 -32.68 7.89 -186.59 -1.47 -34.15 16 25 N -0.47 -14.38 9.55 -179.40 -1.71 -16.09 16 26 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.03 0.78 8.14 -2.39 -0.02 0.77 16 28 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.07 0.73 7.15 -2.39 -0.02 0.72 16 32 H 0.04 1.02 7.98 -2.39 -0.02 1.00 16 33 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.21 2.66 7.31 -2.91 -0.02 2.64 16 36 H 0.09 2.59 7.91 -2.39 -0.02 2.57 16 37 H 0.08 2.57 7.93 -2.39 -0.02 2.55 16 38 H 0.39 17.28 8.58 -92.70 -0.80 16.49 16 39 H 0.12 4.63 6.68 -2.91 -0.02 4.62 16 40 H 0.13 4.86 8.06 -2.91 -0.02 4.84 16 41 H 0.10 4.99 8.06 -2.91 -0.02 4.97 16 42 H 0.27 13.87 8.29 -92.71 -0.77 13.10 16 Total: -1.00 -68.33 363.01 2.36 -65.98 By element: Atomic # 1 Polarization: 36.33 SS G_CDS: 0.24 Total: 36.57 kcal Atomic # 6 Polarization: -28.40 SS G_CDS: 6.33 Total: -22.07 kcal Atomic # 7 Polarization: -119.53 SS G_CDS: -4.93 Total: -124.46 kcal Atomic # 14 Polarization: 39.43 SS G_CDS: 2.03 Total: 41.45 kcal Atomic # 16 Polarization: 3.85 SS G_CDS: -1.31 Total: 2.54 kcal Total: -68.33 2.36 -65.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883357789.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.596 kcal (2) G-P(sol) polarization free energy of solvation -68.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds