Wall clock time and date at job start Tue Mar 31 2020 11:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46916 * 2 1 4 4 C 1.50701 * 109.47089 * 119.99649 * 2 1 3 5 5 C 1.38257 * 120.00071 * 305.48052 * 4 2 1 6 6 C 1.38214 * 120.00237 * 179.72066 * 5 4 2 7 7 C 1.38252 * 119.99979 * 0.27937 * 6 5 4 8 8 C 1.38219 * 119.99891 * 359.97438 * 7 6 5 9 9 C 1.38212 * 120.00377 * 125.66915 * 4 2 1 10 10 C 1.50703 * 119.99583 * 0.04586 * 9 4 2 11 11 S 1.80994 * 109.47046 * 275.81550 * 10 9 4 12 12 C 1.76205 * 99.99969 * 179.97438 * 11 10 9 13 13 N 1.32383 * 126.25968 * 0.02830 * 12 11 10 14 14 N 1.28512 * 110.20402 * 179.97438 * 13 12 11 15 15 C 1.33098 * 109.74672 * 359.97438 * 14 13 12 16 16 C 1.39774 * 126.56497 * 179.97438 * 15 14 13 17 17 H 1.07994 * 120.00262 * 180.02562 * 16 15 14 18 18 C 1.40090 * 119.99858 * 0.02616 * 16 15 14 19 19 N 1.30817 * 120.00082 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99747 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47042 * 60.00825 * 20 18 16 22 22 H 1.48499 * 109.46999 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47536 * 300.00473 * 20 18 16 24 24 N 1.36670 * 126.25753 * 179.71219 * 12 11 10 25 25 C 1.46506 * 127.15271 * 0.03235 * 24 12 11 26 26 H 1.08998 * 109.47212 * 60.00571 * 1 2 3 27 27 H 1.09001 * 109.47107 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47623 * 300.00029 * 1 2 3 29 29 H 1.08993 * 109.47623 * 239.99971 * 2 1 3 30 30 H 1.08999 * 109.47457 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.46714 * 299.99734 * 3 2 1 32 32 H 1.09007 * 109.47034 * 59.99498 * 3 2 1 33 33 H 1.08006 * 120.00341 * 359.97438 * 5 4 2 34 34 H 1.08004 * 120.00155 * 180.25641 * 6 5 4 35 35 H 1.07998 * 120.00229 * 179.97438 * 7 6 5 36 36 H 1.08001 * 120.00414 * 179.97438 * 8 7 6 37 37 H 1.09002 * 109.47148 * 35.81761 * 10 9 4 38 38 H 1.09001 * 109.47057 * 155.81691 * 10 9 4 39 39 H 0.96998 * 120.00061 * 179.97438 * 19 18 16 40 40 H 1.09003 * 109.46545 * 90.02956 * 25 24 12 41 41 H 1.09000 * 109.47242 * 210.02581 * 25 24 12 42 42 H 1.08994 * 109.47398 * 330.02830 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7103 1.2305 5 6 1.6075 -0.3076 2.4831 6 6 2.0637 -0.9628 3.6113 7 6 2.9493 -2.0172 3.4877 8 6 3.3781 -2.4165 2.2359 9 6 2.9207 -1.7619 1.1072 10 6 3.3878 -2.1975 -0.2577 11 16 2.1771 -3.3359 -0.9749 12 6 2.9530 -3.6738 -2.5204 13 7 4.1059 -3.1788 -2.9426 14 7 4.3808 -3.6309 -4.1137 15 6 3.4134 -4.4509 -4.5177 16 6 3.3560 -5.1349 -5.7353 17 1 2.5158 -5.7767 -5.9551 18 6 4.3885 -4.9878 -6.6706 19 7 5.4066 -4.2107 -6.4043 20 14 4.3122 -5.9025 -8.2975 21 1 3.0940 -5.4905 -9.0403 22 1 5.5168 -5.5798 -9.1038 23 1 4.2652 -7.3646 -8.0418 24 7 2.4774 -4.4997 -3.5001 25 6 1.2336 -5.2736 -3.4783 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8899 30 1 3.1299 1.4426 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6765 1.9564 0.8900 33 1 0.9160 0.5164 2.5797 34 1 1.7287 -0.6508 4.5895 35 1 3.3061 -2.5289 4.3693 36 1 4.0703 -3.2399 2.1393 37 1 3.4917 -1.3244 -0.9020 38 1 4.3509 -2.7002 -0.1689 39 1 6.1217 -4.1092 -7.0517 40 1 0.4255 -4.6743 -3.8979 41 1 1.3592 -6.1799 -4.0707 42 1 0.9908 -5.5422 -2.4503 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000901549905.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:00 Heat of formation + Delta-G solvation = 75.259929 kcal Electronic energy + Delta-G solvation = -23487.048320 eV Core-core repulsion = 20172.604643 eV Total energy + Delta-G solvation = -3314.443677 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.49541 -39.78918 -35.37248 -33.69932 -33.35257 -32.71225 -29.81524 -29.33296 -27.13107 -27.03379 -26.39009 -25.42640 -23.50743 -21.57604 -20.80672 -20.38899 -19.77487 -17.36990 -16.77375 -16.08052 -15.72641 -15.43898 -14.92899 -14.70070 -14.60952 -14.06380 -14.02375 -13.68896 -13.35520 -13.24278 -12.93523 -12.74538 -12.40408 -12.26866 -12.22105 -12.02563 -11.92187 -11.44933 -11.30118 -11.27623 -11.11411 -10.93203 -10.62413 -10.46727 -10.44540 -10.29182 -9.71472 -9.60690 -8.78533 -8.69606 -8.57492 -8.41592 -8.34896 -6.82461 -6.64782 -4.57324 1.13257 1.39008 2.27065 2.85077 2.92893 3.05901 3.08096 3.36691 3.82368 3.87594 4.24581 4.42777 4.62698 4.74013 4.84960 4.98085 5.11830 5.24276 5.30610 5.32712 5.40108 5.49482 5.55333 5.63297 5.67372 5.83159 5.83669 5.87533 5.88717 6.04148 6.04846 6.11363 6.13882 6.26223 6.29657 6.48886 6.50769 6.72612 6.77584 6.88771 6.99360 7.24443 7.49257 7.89740 8.17392 8.70149 8.86227 10.27743 10.64511 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.023725 B = 0.003059 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.903645 B = 9149.802478 C = 9330.536835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.069 4.069 3 C -0.142 4.142 4 C -0.054 4.054 5 C -0.118 4.118 6 C -0.118 4.118 7 C -0.127 4.127 8 C -0.099 4.099 9 C -0.068 4.068 10 C -0.055 4.055 11 S -0.045 6.045 12 C 0.044 3.956 13 N -0.286 5.286 14 N -0.334 5.334 15 C 0.347 3.653 16 C -0.448 4.448 17 H 0.083 0.917 18 C 0.078 3.922 19 N -0.737 5.737 20 Si 0.921 3.079 21 H -0.265 1.265 22 H -0.276 1.276 23 H -0.265 1.265 24 N -0.515 5.515 25 C 0.102 3.898 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.051 0.949 29 H 0.092 0.908 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.053 0.947 33 H 0.121 0.879 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.125 0.875 37 H 0.101 0.899 38 H 0.097 0.903 39 H 0.280 0.720 40 H 0.056 0.944 41 H 0.077 0.923 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.540 5.096 14.085 17.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.088 4.088 3 C -0.199 4.199 4 C -0.056 4.056 5 C -0.136 4.136 6 C -0.137 4.137 7 C -0.145 4.145 8 C -0.119 4.119 9 C -0.070 4.070 10 C -0.203 4.203 11 S 0.184 5.816 12 C -0.328 4.328 13 N -0.132 5.132 14 N -0.181 5.181 15 C 0.102 3.898 16 C -0.488 4.488 17 H 0.101 0.899 18 C -0.147 4.147 19 N -0.361 5.361 20 Si 0.744 3.256 21 H -0.190 1.190 22 H -0.201 1.201 23 H -0.190 1.190 24 N -0.218 5.218 25 C -0.043 4.043 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.110 0.890 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.138 0.862 34 H 0.137 0.863 35 H 0.138 0.862 36 H 0.143 0.857 37 H 0.119 0.881 38 H 0.116 0.884 39 H 0.091 0.909 40 H 0.074 0.926 41 H 0.096 0.904 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.038 5.587 14.422 17.431 hybrid contribution -0.063 -0.888 -1.336 1.605 sum -8.102 4.699 13.086 16.093 Atomic orbital electron populations 1.21804 0.94183 1.02243 1.01408 1.20300 0.96264 0.95950 0.96260 1.21835 1.01328 0.95114 1.01641 1.19751 0.95706 0.95171 0.94987 1.20922 1.00585 1.00272 0.91793 1.21105 0.97886 0.96423 0.98313 1.21071 0.98527 0.97774 0.97156 1.21081 0.99719 0.99238 0.91863 1.19290 0.97961 0.96209 0.93520 1.22257 1.00813 1.01901 0.95303 1.84620 1.29560 1.58353 1.09038 1.25420 1.01482 1.07733 0.98158 1.74529 1.09130 1.20935 1.08625 1.75455 1.21933 1.17217 1.03490 1.21611 0.83867 0.95045 0.89261 1.18067 1.07399 1.26153 0.97209 0.89862 1.25793 0.94232 0.94772 0.99913 1.70001 1.05685 1.26345 1.34044 0.86181 0.78700 0.80192 0.80484 1.18964 1.20070 1.18978 1.46040 1.20437 1.39855 1.15432 1.21487 0.84932 0.95916 1.01994 0.92394 0.92182 0.92948 0.89029 0.92527 0.92284 0.92788 0.86154 0.86329 0.86159 0.85736 0.88059 0.88418 0.90927 0.92585 0.90388 0.91567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 8.94 37.16 0.33 -1.19 16 2 C -0.07 -0.86 2.82 -91.77 -0.26 -1.11 16 3 C -0.14 -1.54 9.06 37.16 0.34 -1.20 16 4 C -0.05 -0.69 4.78 -104.62 -0.50 -1.19 16 5 C -0.12 -1.28 8.76 -39.58 -0.35 -1.63 16 6 C -0.12 -1.20 10.05 -39.58 -0.40 -1.60 16 7 C -0.13 -1.36 10.05 -39.58 -0.40 -1.76 16 8 C -0.10 -1.24 9.68 -39.58 -0.38 -1.63 16 9 C -0.07 -0.95 5.13 -104.62 -0.54 -1.49 16 10 C -0.05 -0.90 4.59 36.01 0.17 -0.74 16 11 S -0.05 -0.83 21.42 -107.50 -2.30 -3.13 16 12 C 0.04 1.06 8.09 -87.28 -0.71 0.35 16 13 N -0.29 -7.88 11.62 30.89 0.36 -7.52 16 14 N -0.33 -10.08 10.48 31.26 0.33 -9.76 16 15 C 0.35 9.75 7.53 -154.81 -1.17 8.58 16 16 C -0.45 -11.93 9.05 -38.31 -0.35 -12.27 16 17 H 0.08 2.00 7.31 -52.49 -0.38 1.62 16 18 C 0.08 2.01 5.50 -17.29 -0.10 1.92 16 19 N -0.74 -20.32 11.94 55.56 0.66 -19.66 16 20 Si 0.92 18.56 29.56 -169.99 -5.03 13.54 16 21 H -0.26 -5.22 7.11 56.52 0.40 -4.81 16 22 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 23 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 24 N -0.52 -12.56 3.26 -123.18 -0.40 -12.96 16 25 C 0.10 1.88 10.87 59.85 0.65 2.53 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.05 0.49 7.10 -51.93 -0.37 0.12 16 29 H 0.09 1.35 5.41 -51.93 -0.28 1.07 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.51 7.73 -51.92 -0.40 0.10 16 33 H 0.12 1.09 7.11 -52.48 -0.37 0.71 16 34 H 0.12 0.91 8.06 -52.48 -0.42 0.48 16 35 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 36 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 37 H 0.10 1.77 6.55 -51.91 -0.34 1.43 16 38 H 0.10 1.70 8.05 -51.92 -0.42 1.28 16 39 H 0.28 6.97 8.30 -40.82 -0.34 6.64 16 40 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 41 H 0.08 1.35 7.54 -51.93 -0.39 0.96 16 42 H 0.07 1.08 7.84 -51.93 -0.41 0.68 16 LS Contribution 362.30 15.07 5.46 5.46 Total: -1.00 -32.56 362.30 -10.45 -43.02 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -5.88 Total: 3.43 kcal Atomic # 6 Polarization: -8.76 SS G_CDS: -3.65 Total: -12.41 kcal Atomic # 7 Polarization: -50.85 SS G_CDS: 0.95 Total: -49.90 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -5.03 Total: 13.54 kcal Atomic # 16 Polarization: -0.83 SS G_CDS: -2.30 Total: -3.13 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.56 -10.45 -43.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000901549905.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.275 kcal (2) G-P(sol) polarization free energy of solvation -32.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds