Wall clock time and date at job start Tue Mar 31 2020 11:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46916 * 2 1 4 4 C 1.50701 * 109.47089 * 119.99649 * 2 1 3 5 5 C 1.38257 * 120.00071 * 305.48052 * 4 2 1 6 6 C 1.38214 * 120.00237 * 179.72066 * 5 4 2 7 7 C 1.38252 * 119.99979 * 0.27937 * 6 5 4 8 8 C 1.38219 * 119.99891 * 359.97438 * 7 6 5 9 9 C 1.38212 * 120.00377 * 125.66915 * 4 2 1 10 10 C 1.50703 * 119.99583 * 0.04586 * 9 4 2 11 11 S 1.80994 * 109.47046 * 275.81550 * 10 9 4 12 12 C 1.76205 * 99.99969 * 179.97438 * 11 10 9 13 13 N 1.32383 * 126.25968 * 0.02830 * 12 11 10 14 14 N 1.28512 * 110.20402 * 179.97438 * 13 12 11 15 15 C 1.33098 * 109.74672 * 359.97438 * 14 13 12 16 16 C 1.39774 * 126.56497 * 179.97438 * 15 14 13 17 17 H 1.07994 * 120.00262 * 180.02562 * 16 15 14 18 18 C 1.40090 * 119.99858 * 0.02616 * 16 15 14 19 19 N 1.30817 * 120.00082 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99747 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47042 * 60.00825 * 20 18 16 22 22 H 1.48499 * 109.46999 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47536 * 300.00473 * 20 18 16 24 24 N 1.36670 * 126.25753 * 179.71219 * 12 11 10 25 25 C 1.46506 * 127.15271 * 0.03235 * 24 12 11 26 26 H 1.08998 * 109.47212 * 60.00571 * 1 2 3 27 27 H 1.09001 * 109.47107 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47623 * 300.00029 * 1 2 3 29 29 H 1.08993 * 109.47623 * 239.99971 * 2 1 3 30 30 H 1.08999 * 109.47457 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.46714 * 299.99734 * 3 2 1 32 32 H 1.09007 * 109.47034 * 59.99498 * 3 2 1 33 33 H 1.08006 * 120.00341 * 359.97438 * 5 4 2 34 34 H 1.08004 * 120.00155 * 180.25641 * 6 5 4 35 35 H 1.07998 * 120.00229 * 179.97438 * 7 6 5 36 36 H 1.08001 * 120.00414 * 179.97438 * 8 7 6 37 37 H 1.09002 * 109.47148 * 35.81761 * 10 9 4 38 38 H 1.09001 * 109.47057 * 155.81691 * 10 9 4 39 39 H 0.96998 * 120.00061 * 179.97438 * 19 18 16 40 40 H 1.09003 * 109.46545 * 90.02956 * 25 24 12 41 41 H 1.09000 * 109.47242 * 210.02581 * 25 24 12 42 42 H 1.08994 * 109.47398 * 330.02830 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7103 1.2305 5 6 1.6075 -0.3076 2.4831 6 6 2.0637 -0.9628 3.6113 7 6 2.9493 -2.0172 3.4877 8 6 3.3781 -2.4165 2.2359 9 6 2.9207 -1.7619 1.1072 10 6 3.3878 -2.1975 -0.2577 11 16 2.1771 -3.3359 -0.9749 12 6 2.9530 -3.6738 -2.5204 13 7 4.1059 -3.1788 -2.9426 14 7 4.3808 -3.6309 -4.1137 15 6 3.4134 -4.4509 -4.5177 16 6 3.3560 -5.1349 -5.7353 17 1 2.5158 -5.7767 -5.9551 18 6 4.3885 -4.9878 -6.6706 19 7 5.4066 -4.2107 -6.4043 20 14 4.3122 -5.9025 -8.2975 21 1 3.0940 -5.4905 -9.0403 22 1 5.5168 -5.5798 -9.1038 23 1 4.2652 -7.3646 -8.0418 24 7 2.4774 -4.4997 -3.5001 25 6 1.2336 -5.2736 -3.4783 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8899 30 1 3.1299 1.4426 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6765 1.9564 0.8900 33 1 0.9160 0.5164 2.5797 34 1 1.7287 -0.6508 4.5895 35 1 3.3061 -2.5289 4.3693 36 1 4.0703 -3.2399 2.1393 37 1 3.4917 -1.3244 -0.9020 38 1 4.3509 -2.7002 -0.1689 39 1 6.1217 -4.1092 -7.0517 40 1 0.4255 -4.6743 -3.8979 41 1 1.3592 -6.1799 -4.0707 42 1 0.9908 -5.5422 -2.4503 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000901549905.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:59 Heat of formation + Delta-G solvation = 58.867161 kcal Electronic energy + Delta-G solvation = -23487.759164 eV Core-core repulsion = 20172.604643 eV Total energy + Delta-G solvation = -3315.154521 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.46438 -40.72200 -36.27396 -35.63726 -35.18445 -33.79648 -31.32739 -30.70056 -28.49886 -27.98148 -27.90530 -27.26668 -24.40085 -22.86645 -22.70544 -22.03348 -20.71548 -19.27469 -18.06551 -17.42013 -17.20037 -16.78920 -16.49067 -16.27606 -15.86739 -15.56331 -15.03488 -14.94985 -14.60418 -14.25556 -14.11963 -14.00002 -13.83100 -13.80368 -13.33240 -13.13831 -12.93734 -12.90707 -12.79934 -12.76435 -12.26509 -12.06770 -12.02155 -11.93317 -11.69492 -11.53072 -11.42822 -11.35700 -10.59175 -10.39567 -10.29068 -9.69218 -9.50326 -8.55136 -8.54942 -6.59936 0.00871 0.50104 0.79130 1.19617 1.33857 1.40772 1.56388 1.61505 2.17860 2.43833 2.49759 2.91047 3.32994 3.57899 3.76205 3.86916 3.98561 4.05643 4.28698 4.32568 4.33163 4.42557 4.50930 4.58780 4.59545 4.61938 4.71753 4.81721 4.87344 4.93798 4.95859 4.99758 5.08677 5.16700 5.24887 5.30850 5.34293 5.41200 5.55306 5.59994 5.63116 5.77364 6.02051 6.11679 6.20420 6.74508 6.91214 8.40330 8.63288 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.023725 B = 0.003059 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.903645 B = 9149.802478 C = 9330.536835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.071 4.071 3 C -0.139 4.139 4 C -0.061 4.061 5 C -0.118 4.118 6 C -0.108 4.108 7 C -0.127 4.127 8 C -0.111 4.111 9 C -0.092 4.092 10 C -0.045 4.045 11 S 0.000 6.000 12 C 0.053 3.947 13 N -0.332 5.332 14 N -0.389 5.389 15 C 0.317 3.683 16 C -0.473 4.473 17 H 0.104 0.896 18 C 0.028 3.972 19 N -0.788 5.788 20 Si 1.008 2.992 21 H -0.253 1.253 22 H -0.272 1.272 23 H -0.253 1.253 24 N -0.522 5.522 25 C 0.094 3.906 26 H 0.059 0.941 27 H 0.048 0.952 28 H 0.075 0.925 29 H 0.058 0.942 30 H 0.043 0.957 31 H 0.061 0.939 32 H 0.075 0.925 33 H 0.145 0.855 34 H 0.153 0.847 35 H 0.147 0.853 36 H 0.124 0.876 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.284 0.716 40 H 0.074 0.926 41 H 0.089 0.911 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.964 4.908 15.923 19.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.090 4.090 3 C -0.196 4.196 4 C -0.063 4.063 5 C -0.136 4.136 6 C -0.127 4.127 7 C -0.145 4.145 8 C -0.131 4.131 9 C -0.094 4.094 10 C -0.194 4.194 11 S 0.230 5.770 12 C -0.320 4.320 13 N -0.176 5.176 14 N -0.236 5.236 15 C 0.071 3.929 16 C -0.513 4.513 17 H 0.121 0.879 18 C -0.192 4.192 19 N -0.413 5.413 20 Si 0.826 3.174 21 H -0.177 1.177 22 H -0.196 1.196 23 H -0.177 1.177 24 N -0.224 5.224 25 C -0.049 4.049 26 H 0.078 0.922 27 H 0.067 0.933 28 H 0.093 0.907 29 H 0.076 0.924 30 H 0.062 0.938 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.163 0.837 34 H 0.170 0.830 35 H 0.165 0.835 36 H 0.142 0.858 37 H 0.102 0.898 38 H 0.099 0.901 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.108 0.892 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -10.480 5.393 16.272 20.092 hybrid contribution 0.599 -0.743 -1.635 1.893 sum -9.882 4.650 14.637 18.262 Atomic orbital electron populations 1.21783 0.92867 1.01915 1.02684 1.20266 0.97324 0.96416 0.94966 1.21812 1.00517 0.94415 1.02834 1.19852 0.95605 0.94855 0.96025 1.21211 1.00614 1.00803 0.90992 1.21543 0.96401 0.95194 0.99574 1.21397 0.98141 0.97925 0.97011 1.21221 1.00007 0.99435 0.92433 1.19165 1.00129 0.98047 0.92083 1.22204 0.99731 1.00515 0.96913 1.84390 1.29314 1.58318 1.05010 1.26508 1.00444 1.05235 0.99841 1.74406 1.11427 1.23038 1.08736 1.75310 1.24144 1.19165 1.04938 1.22044 0.84650 0.95536 0.90670 1.18609 1.08668 1.26725 0.97302 0.87852 1.27010 0.93095 0.95132 1.03998 1.70157 1.06879 1.28396 1.35917 0.84894 0.79060 0.78824 0.74616 1.17712 1.19624 1.17702 1.46388 1.21491 1.39988 1.14518 1.21845 0.83036 0.96068 1.03967 0.92154 0.93264 0.90651 0.92386 0.93816 0.92035 0.90605 0.83731 0.82950 0.83546 0.85798 0.89793 0.90067 0.90526 0.90790 0.89197 0.89268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 8.94 71.98 0.64 -2.09 16 2 C -0.07 -1.72 2.82 -11.54 -0.03 -1.76 16 3 C -0.14 -2.89 9.06 71.98 0.65 -2.24 16 4 C -0.06 -1.48 4.78 -19.87 -0.10 -1.57 16 5 C -0.12 -2.18 8.76 22.27 0.19 -1.98 16 6 C -0.11 -1.75 10.05 22.27 0.22 -1.52 16 7 C -0.13 -2.33 10.05 22.27 0.22 -2.10 16 8 C -0.11 -2.67 9.68 22.27 0.22 -2.46 16 9 C -0.09 -2.56 5.13 -19.87 -0.10 -2.66 16 10 C -0.05 -1.58 4.59 71.24 0.33 -1.25 16 11 S 0.00 0.01 21.42 -56.49 -1.21 -1.20 16 12 C 0.05 2.67 8.09 179.18 1.45 4.12 16 13 N -0.33 -19.38 11.62 -56.17 -0.65 -20.03 16 14 N -0.39 -24.93 10.48 -55.02 -0.58 -25.51 16 15 C 0.32 18.56 7.53 133.23 1.00 19.57 16 16 C -0.47 -25.73 9.05 23.09 0.21 -25.52 16 17 H 0.10 4.96 7.31 -2.91 -0.02 4.93 16 18 C 0.03 1.48 5.50 85.29 0.47 1.95 16 19 N -0.79 -45.45 11.94 21.86 0.26 -45.19 16 20 Si 1.01 38.17 29.56 68.60 2.03 40.20 16 21 H -0.25 -9.03 7.11 99.48 0.71 -8.33 16 22 H -0.27 -9.97 7.11 99.48 0.71 -9.26 16 23 H -0.25 -9.02 7.11 99.48 0.71 -8.31 16 24 N -0.52 -25.98 3.26 -543.61 -1.77 -27.75 16 25 C 0.09 3.37 10.87 127.77 1.39 4.76 16 26 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.07 1.16 7.10 -2.39 -0.02 1.14 16 29 H 0.06 1.79 5.41 -2.39 -0.01 1.78 16 30 H 0.04 1.00 8.14 -2.39 -0.02 0.99 16 31 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.08 1.23 7.73 -2.38 -0.02 1.21 16 33 H 0.14 1.94 7.11 -2.91 -0.02 1.92 16 34 H 0.15 1.47 8.06 -2.91 -0.02 1.45 16 35 H 0.15 1.90 8.06 -2.91 -0.02 1.87 16 36 H 0.12 2.89 8.06 -2.91 -0.02 2.87 16 37 H 0.08 3.19 6.55 -2.39 -0.02 3.17 16 38 H 0.08 3.04 8.05 -2.39 -0.02 3.02 16 39 H 0.28 14.82 8.30 -92.71 -0.77 14.05 16 40 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 41 H 0.09 3.01 7.54 -2.39 -0.02 2.99 16 42 H 0.09 2.77 7.84 -2.39 -0.02 2.75 16 Total: -1.00 -76.06 362.30 5.87 -70.19 By element: Atomic # 1 Polarization: 23.03 SS G_CDS: 1.02 Total: 24.06 kcal Atomic # 6 Polarization: -21.53 SS G_CDS: 6.77 Total: -14.76 kcal Atomic # 7 Polarization: -115.74 SS G_CDS: -2.74 Total: -118.48 kcal Atomic # 14 Polarization: 38.17 SS G_CDS: 2.03 Total: 40.20 kcal Atomic # 16 Polarization: 0.01 SS G_CDS: -1.21 Total: -1.20 kcal Total: -76.06 5.87 -70.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000901549905.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.056 kcal (2) G-P(sol) polarization free energy of solvation -76.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds