Wall clock time and date at job start Tue Mar 31 2020 11:30:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.46563 * 2 1 4 4 C 1.50699 * 109.46800 * 180.02562 * 3 2 1 5 5 C 1.38278 * 119.92785 * 269.72676 * 4 3 2 6 6 C 1.38121 * 120.07228 * 179.76918 * 5 4 3 7 7 C 1.38872 * 119.92166 * 0.48191 * 6 5 4 8 8 N 1.39927 * 120.06554 * 179.79128 * 7 6 5 9 9 C 1.46761 * 124.35484 * 353.96801 * 8 7 6 10 10 C 1.54659 * 105.38561 * 162.85202 * 9 8 7 11 11 H 1.08994 * 111.22498 * 267.57928 * 10 9 8 12 12 C 1.50700 * 110.81834 * 143.77834 * 10 9 8 13 13 O 1.21216 * 120.00178 * 6.34947 * 12 10 9 14 14 O 1.34311 * 119.99867 * 186.35166 * 12 10 9 15 15 C 1.34921 * 117.00095 * 180.02562 * 14 12 10 16 16 H 1.07997 * 120.00150 * 359.97438 * 15 14 12 17 17 C 1.38760 * 120.00022 * 180.02562 * 15 14 12 18 18 N 1.31435 * 119.99600 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99811 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47200 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.46656 * 119.99821 * 19 17 15 22 22 H 1.48493 * 109.47104 * 239.99446 * 19 17 15 23 23 C 1.54621 * 101.68100 * 25.77004 * 10 9 8 24 24 C 1.34423 * 124.34788 * 174.26722 * 8 7 6 25 25 O 1.21290 * 124.94319 * 0.43088 * 24 8 7 26 26 C 1.38870 * 119.86535 * 359.77226 * 7 6 5 27 27 C 1.38116 * 119.92649 * 359.97438 * 26 7 6 28 28 H 1.09001 * 109.47703 * 59.99882 * 1 2 3 29 29 H 1.09007 * 109.46967 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.47196 * 299.99387 * 1 2 3 31 31 H 1.08995 * 109.46910 * 240.00515 * 2 1 3 32 32 H 1.08997 * 109.47271 * 119.99955 * 2 1 3 33 33 H 1.08997 * 109.47290 * 299.99943 * 3 2 1 34 34 H 1.08995 * 109.47087 * 60.00624 * 3 2 1 35 35 H 1.07998 * 119.96751 * 359.97438 * 5 4 3 36 36 H 1.07992 * 120.03766 * 180.25411 * 6 5 4 37 37 H 1.09001 * 110.24556 * 281.98688 * 9 8 7 38 38 H 1.09003 * 110.23923 * 43.98146 * 9 8 7 39 39 H 0.97006 * 119.99378 * 179.97438 * 18 17 15 40 40 H 1.09002 * 110.48568 * 216.30199 * 23 10 9 41 41 H 1.09010 * 110.60083 * 93.72140 * 23 10 9 42 42 H 1.08001 * 120.03836 * 179.97438 * 26 7 6 43 43 H 1.07994 * 119.96327 * 180.02562 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5469 1.4427 -0.0006 5 6 4.2372 1.4482 1.1975 6 6 5.6184 1.4435 1.2004 7 6 6.3137 1.4433 -0.0018 8 7 7.7130 1.4429 -0.0023 9 6 8.5417 1.5700 1.2022 10 6 9.9493 1.0835 0.7852 11 1 10.0755 0.0201 0.9885 12 6 11.0204 1.8918 1.4710 13 8 10.7175 2.7056 2.3168 14 8 12.3107 1.7106 1.1451 15 6 13.2190 2.4657 1.7969 16 1 12.8950 3.1767 2.5425 17 6 14.5695 2.3297 1.5086 18 7 14.9638 1.4649 0.6008 19 14 15.8271 3.3758 2.4107 20 1 15.1311 4.2637 3.3764 21 1 16.7715 2.4935 3.1420 22 1 16.5784 4.2012 1.4312 23 6 9.9374 1.3584 -0.7364 24 6 8.4710 1.3318 -1.1069 25 8 8.0416 1.2259 -2.2363 26 6 5.6174 1.4430 -1.2033 27 6 4.2363 1.4424 -1.1993 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8901 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.6765 1.9564 -0.8899 34 1 1.6766 1.9564 0.8900 35 1 3.6959 1.4530 2.1320 36 1 6.1570 1.4437 2.1364 37 1 8.5796 2.6102 1.5259 38 1 8.1471 0.9402 1.9996 39 1 15.9079 1.3701 0.3990 40 1 10.4799 0.5776 -1.2694 41 1 10.3679 2.3363 -0.9528 42 1 6.1553 1.4432 -2.1398 43 1 3.6942 1.4418 -2.1334 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000914639168.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:12 Heat of formation + Delta-G solvation = -96.851222 kcal Electronic energy + Delta-G solvation = -25483.259079 eV Core-core repulsion = 21686.306481 eV Total energy + Delta-G solvation = -3796.952599 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.19268 -39.34306 -38.76226 -36.65229 -35.54964 -35.01202 -32.91156 -32.22426 -31.02715 -29.95847 -27.74109 -26.50018 -25.57799 -23.76050 -22.85285 -22.01433 -21.15402 -19.95192 -19.56154 -17.89245 -17.72603 -17.24194 -16.30587 -15.75282 -15.60183 -15.15255 -14.87505 -14.73591 -14.45630 -14.29290 -14.11685 -13.93659 -13.63706 -13.49751 -13.38246 -13.11678 -12.92750 -12.49570 -12.33283 -12.26785 -11.74225 -11.54652 -11.47346 -11.38275 -11.29089 -11.16050 -11.11076 -10.87874 -10.54022 -10.47082 -10.06464 -9.92942 -9.67734 -9.17206 -9.00718 -8.69344 -7.85075 -6.52505 -4.20901 1.17442 1.34824 2.56734 2.72250 2.99253 3.13593 3.20657 3.31707 3.74273 3.75347 4.16970 4.34819 4.53977 4.58774 4.66644 4.83182 4.86720 4.91178 4.95001 5.04659 5.15508 5.19742 5.24337 5.32721 5.43101 5.49247 5.55552 5.56534 5.60363 5.69001 5.75885 5.87106 5.90217 5.98833 6.02366 6.05136 6.19780 6.28578 6.48519 6.57002 6.58240 7.02112 7.04269 7.28783 7.81762 8.01991 8.53451 8.96074 9.68249 10.64751 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.035957 B = 0.002307 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.524999 B =12133.874559 C =12646.503591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.075 4.075 4 C -0.115 4.115 5 C -0.089 4.089 6 C -0.156 4.156 7 C 0.169 3.831 8 N -0.560 5.560 9 C 0.111 3.889 10 C -0.083 4.083 11 H 0.120 0.880 12 C 0.404 3.596 13 O -0.551 6.551 14 O -0.204 6.204 15 C -0.385 4.385 16 H 0.098 0.902 17 C 0.044 3.956 18 N -0.860 5.860 19 Si 0.943 3.057 20 H -0.265 1.265 21 H -0.275 1.275 22 H -0.275 1.275 23 C -0.138 4.138 24 C 0.522 3.478 25 O -0.513 6.513 26 C -0.156 4.156 27 C -0.089 4.089 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.123 0.877 36 H 0.127 0.873 37 H 0.102 0.898 38 H 0.091 0.909 39 H 0.271 0.729 40 H 0.120 0.880 41 H 0.117 0.883 42 H 0.155 0.845 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.653 -2.680 -0.836 21.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.113 4.113 4 C -0.116 4.116 5 C -0.108 4.108 6 C -0.176 4.176 7 C 0.075 3.925 8 N -0.283 5.283 9 C -0.011 4.011 10 C -0.103 4.103 11 H 0.137 0.863 12 C 0.250 3.750 13 O -0.449 6.449 14 O -0.111 6.111 15 C -0.461 4.461 16 H 0.116 0.884 17 C -0.161 4.161 18 N -0.496 5.496 19 Si 0.768 3.232 20 H -0.189 1.189 21 H -0.201 1.201 22 H -0.201 1.201 23 C -0.178 4.178 24 C 0.312 3.688 25 O -0.389 6.389 26 C -0.176 4.176 27 C -0.108 4.108 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.141 0.859 36 H 0.145 0.855 37 H 0.120 0.880 38 H 0.110 0.890 39 H 0.081 0.919 40 H 0.138 0.862 41 H 0.135 0.865 42 H 0.172 0.828 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -21.693 -2.610 -1.332 21.890 hybrid contribution 0.774 0.424 0.569 1.050 sum -20.919 -2.185 -0.762 21.047 Atomic orbital electron populations 1.21796 0.95856 1.01616 1.01761 1.21529 0.95447 0.96336 1.02442 1.20561 0.90949 0.97128 1.02630 1.19823 0.95582 1.03056 0.93172 1.20766 0.93073 0.99380 0.97586 1.20824 0.94529 1.05853 0.96436 1.17822 0.81024 0.98942 0.94689 1.45926 1.03973 1.68651 1.09757 1.22234 0.88074 1.04538 0.86214 1.21631 0.91925 1.01839 0.94864 0.86250 1.22401 0.84690 0.84172 0.83745 1.90581 1.83034 1.36985 1.34282 1.83858 1.13523 1.56532 1.57159 1.21311 0.84892 1.19144 1.20710 0.88411 1.25365 0.96942 0.97163 0.96630 1.69993 1.16799 1.32940 1.29881 0.85602 0.79471 0.79123 0.79016 1.18879 1.20093 1.20084 1.22332 0.93017 1.07145 0.95332 1.21172 0.89488 0.74392 0.83746 1.90595 1.78108 1.48781 1.21402 1.21642 0.94507 1.03037 0.98444 1.20888 0.93331 0.99039 0.97504 0.92753 0.92771 0.92761 0.91868 0.91878 0.91251 0.91238 0.85863 0.85463 0.88018 0.89042 0.91928 0.86181 0.86467 0.82781 0.85938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.91 37.16 0.37 -0.55 16 2 C -0.12 -0.87 5.92 -26.73 -0.16 -1.03 16 3 C -0.08 -0.59 5.34 -27.88 -0.15 -0.73 16 4 C -0.12 -1.19 5.14 -104.59 -0.54 -1.72 16 5 C -0.09 -0.94 9.69 -39.61 -0.38 -1.32 16 6 C -0.16 -1.86 9.42 -39.39 -0.37 -2.23 16 7 C 0.17 2.38 6.60 -83.69 -0.55 1.83 16 8 N -0.56 -8.23 3.14 -112.16 -0.35 -8.58 16 9 C 0.11 1.58 5.82 -3.03 -0.02 1.56 16 10 C -0.08 -1.33 3.67 -90.05 -0.33 -1.66 16 11 H 0.12 1.68 8.14 -51.93 -0.42 1.26 16 12 C 0.40 8.94 7.13 36.01 0.26 9.20 16 13 O -0.55 -13.36 14.80 -19.06 -0.28 -13.65 16 14 O -0.20 -5.40 9.73 -20.70 -0.20 -5.60 16 15 C -0.38 -10.74 9.65 30.93 0.30 -10.44 16 16 H 0.10 2.75 6.86 -52.49 -0.36 2.39 16 17 C 0.04 1.18 5.49 -17.53 -0.10 1.09 16 18 N -0.86 -24.11 13.67 55.48 0.76 -23.35 16 19 Si 0.94 20.43 29.55 -169.99 -5.02 15.41 16 20 H -0.26 -5.65 7.11 56.52 0.40 -5.25 16 21 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 22 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 23 C -0.14 -2.15 6.39 -26.75 -0.17 -2.32 16 24 C 0.52 8.36 7.92 -10.86 -0.09 8.28 16 25 O -0.51 -9.23 14.81 5.55 0.08 -9.15 16 26 C -0.16 -2.18 9.29 -39.39 -0.37 -2.54 16 27 C -0.09 -1.02 9.69 -39.61 -0.38 -1.41 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.05 0.30 8.14 -51.92 -0.42 -0.12 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 34 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 35 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 36 H 0.13 1.35 6.74 -52.49 -0.35 1.00 16 37 H 0.10 1.58 7.07 -51.93 -0.37 1.21 16 38 H 0.09 1.09 7.23 -51.93 -0.38 0.71 16 39 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 40 H 0.12 1.74 8.14 -51.93 -0.42 1.32 16 41 H 0.12 1.92 7.90 -51.92 -0.41 1.51 16 42 H 0.15 2.39 5.25 -52.49 -0.28 2.11 16 43 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 LS Contribution 362.71 15.07 5.47 5.47 Total: -1.00 -31.99 362.71 -8.15 -40.14 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -5.92 Total: 3.34 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: -2.68 Total: -4.01 kcal Atomic # 7 Polarization: -32.34 SS G_CDS: 0.41 Total: -31.94 kcal Atomic # 8 Polarization: -28.00 SS G_CDS: -0.40 Total: -28.40 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.99 -8.15 -40.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914639168.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.714 kcal (2) G-P(sol) polarization free energy of solvation -31.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds