Wall clock time and date at job start Tue Mar 31 2020 11:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.46563 * 2 1 4 4 C 1.50699 * 109.46800 * 180.02562 * 3 2 1 5 5 C 1.38278 * 119.92785 * 269.72676 * 4 3 2 6 6 C 1.38121 * 120.07228 * 179.76918 * 5 4 3 7 7 C 1.38872 * 119.92166 * 0.48191 * 6 5 4 8 8 N 1.39927 * 120.06554 * 179.79128 * 7 6 5 9 9 C 1.46761 * 124.35484 * 353.96801 * 8 7 6 10 10 C 1.54659 * 105.38561 * 162.85202 * 9 8 7 11 11 H 1.08994 * 111.22498 * 267.57928 * 10 9 8 12 12 C 1.50700 * 110.81834 * 143.77834 * 10 9 8 13 13 O 1.21216 * 120.00178 * 6.34947 * 12 10 9 14 14 O 1.34311 * 119.99867 * 186.35166 * 12 10 9 15 15 C 1.34921 * 117.00095 * 180.02562 * 14 12 10 16 16 H 1.07997 * 120.00150 * 359.97438 * 15 14 12 17 17 C 1.38760 * 120.00022 * 180.02562 * 15 14 12 18 18 N 1.31435 * 119.99600 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99811 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47200 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.46656 * 119.99821 * 19 17 15 22 22 H 1.48493 * 109.47104 * 239.99446 * 19 17 15 23 23 C 1.54621 * 101.68100 * 25.77004 * 10 9 8 24 24 C 1.34423 * 124.34788 * 174.26722 * 8 7 6 25 25 O 1.21290 * 124.94319 * 0.43088 * 24 8 7 26 26 C 1.38870 * 119.86535 * 359.77226 * 7 6 5 27 27 C 1.38116 * 119.92649 * 359.97438 * 26 7 6 28 28 H 1.09001 * 109.47703 * 59.99882 * 1 2 3 29 29 H 1.09007 * 109.46967 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.47196 * 299.99387 * 1 2 3 31 31 H 1.08995 * 109.46910 * 240.00515 * 2 1 3 32 32 H 1.08997 * 109.47271 * 119.99955 * 2 1 3 33 33 H 1.08997 * 109.47290 * 299.99943 * 3 2 1 34 34 H 1.08995 * 109.47087 * 60.00624 * 3 2 1 35 35 H 1.07998 * 119.96751 * 359.97438 * 5 4 3 36 36 H 1.07992 * 120.03766 * 180.25411 * 6 5 4 37 37 H 1.09001 * 110.24556 * 281.98688 * 9 8 7 38 38 H 1.09003 * 110.23923 * 43.98146 * 9 8 7 39 39 H 0.97006 * 119.99378 * 179.97438 * 18 17 15 40 40 H 1.09002 * 110.48568 * 216.30199 * 23 10 9 41 41 H 1.09010 * 110.60083 * 93.72140 * 23 10 9 42 42 H 1.08001 * 120.03836 * 179.97438 * 26 7 6 43 43 H 1.07994 * 119.96327 * 180.02562 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5469 1.4427 -0.0006 5 6 4.2372 1.4482 1.1975 6 6 5.6184 1.4435 1.2004 7 6 6.3137 1.4433 -0.0018 8 7 7.7130 1.4429 -0.0023 9 6 8.5417 1.5700 1.2022 10 6 9.9493 1.0835 0.7852 11 1 10.0755 0.0201 0.9885 12 6 11.0204 1.8918 1.4710 13 8 10.7175 2.7056 2.3168 14 8 12.3107 1.7106 1.1451 15 6 13.2190 2.4657 1.7969 16 1 12.8950 3.1767 2.5425 17 6 14.5695 2.3297 1.5086 18 7 14.9638 1.4649 0.6008 19 14 15.8271 3.3758 2.4107 20 1 15.1311 4.2637 3.3764 21 1 16.7715 2.4935 3.1420 22 1 16.5784 4.2012 1.4312 23 6 9.9374 1.3584 -0.7364 24 6 8.4710 1.3318 -1.1069 25 8 8.0416 1.2259 -2.2363 26 6 5.6174 1.4430 -1.2033 27 6 4.2363 1.4424 -1.1993 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8901 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.6765 1.9564 -0.8899 34 1 1.6766 1.9564 0.8900 35 1 3.6959 1.4530 2.1320 36 1 6.1570 1.4437 2.1364 37 1 8.5796 2.6102 1.5259 38 1 8.1471 0.9402 1.9996 39 1 15.9079 1.3701 0.3990 40 1 10.4799 0.5776 -1.2694 41 1 10.3679 2.3363 -0.9528 42 1 6.1553 1.4432 -2.1398 43 1 3.6942 1.4418 -2.1334 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000914639168.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:11 Heat of formation + Delta-G solvation = -113.306138 kcal Electronic energy + Delta-G solvation = -25483.972618 eV Core-core repulsion = 21686.306481 eV Total energy + Delta-G solvation = -3797.666137 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.43467 -40.96477 -39.90525 -38.04686 -37.12300 -36.05083 -34.35261 -33.87232 -31.94663 -30.87900 -29.02241 -27.85866 -26.94781 -25.11718 -23.79624 -23.00625 -21.91272 -21.43562 -20.78543 -19.88672 -19.05036 -18.65919 -17.64486 -17.08031 -16.57537 -16.51292 -16.25205 -16.18848 -15.89954 -15.59033 -15.10068 -14.91819 -14.65527 -14.60490 -14.42576 -14.28646 -14.21488 -13.75458 -13.53792 -13.26074 -13.12453 -12.84770 -12.70105 -12.59279 -12.36772 -12.22726 -12.14667 -12.08072 -11.95299 -11.86837 -11.47017 -11.18030 -11.07420 -10.76032 -10.69473 -9.92603 -8.86905 -8.54380 -6.33544 0.18952 0.42714 1.25773 1.35929 1.36591 1.51887 1.57038 1.60253 2.08185 2.54206 2.81210 2.96113 3.05490 3.25927 3.60239 3.88745 3.89024 3.91433 4.05120 4.17322 4.27456 4.31719 4.39865 4.47017 4.47713 4.53887 4.59674 4.68059 4.73996 4.81099 4.83295 4.95236 5.05948 5.07586 5.18404 5.18693 5.24149 5.32860 5.40725 5.49072 5.53099 5.72744 5.81785 5.90632 6.07959 6.61342 6.79485 6.91535 7.72284 8.65700 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.035957 B = 0.002307 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.524999 B =12133.874559 C =12646.503591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C -0.073 4.073 4 C -0.108 4.108 5 C -0.088 4.088 6 C -0.156 4.156 7 C 0.140 3.860 8 N -0.555 5.555 9 C 0.119 3.881 10 C -0.073 4.073 11 H 0.149 0.851 12 C 0.411 3.589 13 O -0.572 6.572 14 O -0.234 6.234 15 C -0.418 4.418 16 H 0.086 0.914 17 C -0.002 4.002 18 N -0.899 5.899 19 Si 1.014 2.986 20 H -0.263 1.263 21 H -0.261 1.261 22 H -0.264 1.264 23 C -0.134 4.134 24 C 0.522 3.478 25 O -0.538 6.538 26 C -0.175 4.175 27 C -0.094 4.094 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.061 0.939 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.152 0.848 36 H 0.142 0.858 37 H 0.088 0.912 38 H 0.122 0.878 39 H 0.278 0.722 40 H 0.130 0.870 41 H 0.105 0.895 42 H 0.133 0.867 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.381 -2.780 0.491 23.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.156 4.156 3 C -0.110 4.110 4 C -0.109 4.109 5 C -0.107 4.107 6 C -0.176 4.176 7 C 0.047 3.953 8 N -0.277 5.277 9 C -0.002 4.002 10 C -0.093 4.093 11 H 0.166 0.834 12 C 0.258 3.742 13 O -0.470 6.470 14 O -0.141 6.141 15 C -0.494 4.494 16 H 0.103 0.897 17 C -0.203 4.203 18 N -0.536 5.536 19 Si 0.833 3.167 20 H -0.187 1.187 21 H -0.186 1.186 22 H -0.188 1.188 23 C -0.174 4.174 24 C 0.312 3.688 25 O -0.416 6.416 26 C -0.196 4.196 27 C -0.112 4.112 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.095 0.905 34 H 0.102 0.898 35 H 0.170 0.830 36 H 0.160 0.840 37 H 0.107 0.893 38 H 0.140 0.860 39 H 0.088 0.912 40 H 0.148 0.852 41 H 0.123 0.877 42 H 0.150 0.850 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -23.464 -2.714 0.008 23.621 hybrid contribution 1.091 0.454 0.158 1.192 sum -22.374 -2.261 0.166 22.488 Atomic orbital electron populations 1.21777 0.94795 1.01996 1.02266 1.21502 0.96349 0.95755 1.01987 1.20614 0.88924 0.97731 1.03735 1.20166 0.97085 1.01026 0.92617 1.21145 0.92620 0.98044 0.98862 1.21058 0.95316 1.05126 0.96092 1.18054 0.80517 1.01079 0.95648 1.45866 1.04506 1.68165 1.09181 1.22197 0.86908 1.04357 0.86751 1.21684 0.90769 1.02304 0.94509 0.83381 1.23463 0.84473 0.83487 0.82802 1.90558 1.83259 1.37907 1.35239 1.83881 1.15058 1.57177 1.57997 1.21463 0.86089 1.20163 1.21649 0.89676 1.26474 0.98441 0.98183 0.97180 1.70070 1.17777 1.34452 1.31272 0.84603 0.76612 0.77511 0.77925 1.18714 1.18604 1.18817 1.22272 0.93193 1.06889 0.95029 1.21119 0.89546 0.74372 0.83781 1.90590 1.78410 1.50246 1.22376 1.21586 0.95634 1.04590 0.97743 1.21095 0.92460 0.98697 0.98962 0.92427 0.92516 0.92091 0.92683 0.92047 0.90535 0.89812 0.83025 0.84026 0.89340 0.85951 0.91214 0.85166 0.87716 0.84972 0.84446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.91 71.98 0.71 -0.71 16 2 C -0.12 -1.42 5.92 30.60 0.18 -1.24 16 3 C -0.07 -0.92 5.34 29.85 0.16 -0.76 16 4 C -0.11 -1.97 5.14 -19.84 -0.10 -2.07 16 5 C -0.09 -1.59 9.69 22.25 0.22 -1.38 16 6 C -0.16 -3.40 9.42 22.39 0.21 -3.19 16 7 C 0.14 3.83 6.60 38.15 0.25 4.08 16 8 N -0.55 -16.05 3.14 -627.35 -1.97 -18.02 16 9 C 0.12 3.26 5.82 86.90 0.51 3.76 16 10 C -0.07 -2.32 3.67 -10.42 -0.04 -2.36 16 11 H 0.15 3.91 8.14 -2.39 -0.02 3.89 16 12 C 0.41 18.40 7.13 71.24 0.51 18.91 16 13 O -0.57 -28.07 14.80 20.76 0.31 -27.76 16 14 O -0.23 -12.66 9.73 14.86 0.14 -12.52 16 15 C -0.42 -23.93 9.65 67.94 0.66 -23.28 16 16 H 0.09 4.94 6.86 -2.91 -0.02 4.92 16 17 C 0.00 -0.10 5.49 84.88 0.47 0.36 16 18 N -0.90 -51.06 13.67 21.63 0.30 -50.76 16 19 Si 1.01 41.80 29.55 68.60 2.03 43.82 16 20 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 21 H -0.26 -10.12 7.11 99.48 0.71 -9.42 16 22 H -0.26 -10.28 7.11 99.48 0.71 -9.58 16 23 C -0.13 -4.21 6.39 30.58 0.20 -4.02 16 24 C 0.52 16.93 7.92 87.90 0.70 17.63 16 25 O -0.54 -19.98 14.81 -3.06 -0.05 -20.03 16 26 C -0.18 -4.90 9.29 22.39 0.21 -4.70 16 27 C -0.09 -2.05 9.69 22.25 0.22 -1.83 16 28 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.06 0.51 8.14 -2.38 -0.02 0.49 16 30 H 0.06 0.50 8.14 -2.38 -0.02 0.48 16 31 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.08 0.89 8.08 -2.39 -0.02 0.87 16 34 H 0.08 0.86 8.08 -2.39 -0.02 0.84 16 35 H 0.15 1.87 8.06 -2.91 -0.02 1.84 16 36 H 0.14 2.61 6.74 -2.91 -0.02 2.59 16 37 H 0.09 2.70 7.07 -2.39 -0.02 2.68 16 38 H 0.12 2.60 7.23 -2.39 -0.02 2.58 16 39 H 0.28 14.39 8.31 -92.70 -0.77 13.62 16 40 H 0.13 3.80 8.14 -2.39 -0.02 3.79 16 41 H 0.10 3.57 7.90 -2.38 -0.02 3.55 16 42 H 0.13 4.28 5.25 -2.91 -0.02 4.26 16 43 H 0.14 2.48 8.06 -2.91 -0.02 2.45 16 Total: -1.00 -70.96 362.71 6.82 -64.14 By element: Atomic # 1 Polarization: 20.88 SS G_CDS: 1.02 Total: 21.90 kcal Atomic # 6 Polarization: -5.82 SS G_CDS: 5.04 Total: -0.78 kcal Atomic # 7 Polarization: -67.10 SS G_CDS: -1.67 Total: -68.78 kcal Atomic # 8 Polarization: -60.71 SS G_CDS: 0.41 Total: -60.31 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.82 kcal Total: -70.96 6.82 -64.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914639168.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.166 kcal (2) G-P(sol) polarization free energy of solvation -70.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds