Wall clock time and date at job start Tue Mar 31 2020 11:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50707 * 109.46942 * 2 1 4 4 C 1.33081 * 119.99576 * 182.51056 * 3 2 1 5 5 C 1.50700 * 119.99471 * 184.27354 * 4 3 2 6 6 C 1.46951 * 120.00510 * 4.27562 * 4 3 2 7 7 O 1.21537 * 119.99786 * 5.30896 * 6 4 3 8 8 O 1.34797 * 120.00260 * 185.31465 * 6 4 3 9 9 C 1.45196 * 117.00130 * 179.97438 * 8 6 4 10 10 C 1.50697 * 109.47286 * 179.97438 * 9 8 6 11 11 O 1.21288 * 119.99980 * 354.97322 * 10 9 8 12 12 N 1.34770 * 120.00290 * 174.97009 * 10 9 8 13 13 C 1.37144 * 119.99778 * 4.22246 * 12 10 9 14 14 H 1.07997 * 120.00061 * 56.52307 * 13 12 10 15 15 C 1.38893 * 119.99918 * 236.51745 * 13 12 10 16 16 N 1.31422 * 119.99900 * 6.27102 * 15 13 12 17 17 Si 1.86803 * 119.99803 * 186.26216 * 15 13 12 18 18 H 1.48499 * 109.47096 * 60.00489 * 17 15 13 19 19 H 1.48499 * 109.47005 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.47261 * 300.00778 * 17 15 13 21 21 C 1.39785 * 120.00285 * 184.22386 * 12 10 9 22 22 C 1.38964 * 120.07951 * 173.89264 * 21 12 10 23 23 C 1.38084 * 119.92038 * 179.97438 * 22 21 12 24 24 C 1.38305 * 120.08121 * 359.97438 * 23 22 21 25 25 C 1.38305 * 120.15612 * 0.02562 * 24 23 22 26 26 C 1.38087 * 120.07975 * 359.97438 * 25 24 23 27 27 H 1.08997 * 109.46752 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46914 * 300.00385 * 1 2 3 29 29 H 1.09004 * 109.47055 * 60.00451 * 1 2 3 30 30 H 1.08994 * 109.47312 * 239.99968 * 2 1 3 31 31 H 1.09004 * 109.47055 * 119.99549 * 2 1 3 32 32 H 1.07999 * 119.99709 * 2.50058 * 3 2 1 33 33 H 1.08995 * 109.47223 * 269.99565 * 5 4 3 34 34 H 1.08997 * 109.47433 * 29.99892 * 5 4 3 35 35 H 1.09006 * 109.46760 * 150.00026 * 5 4 3 36 36 H 1.08998 * 109.47476 * 59.99698 * 9 8 6 37 37 H 1.09000 * 109.47024 * 299.99500 * 9 8 6 38 38 H 0.96999 * 119.99306 * 184.99109 * 16 15 13 39 39 H 1.07996 * 120.03946 * 359.70391 * 22 21 12 40 40 H 1.08005 * 119.95669 * 179.97438 * 23 22 21 41 41 H 1.07998 * 119.92531 * 179.97438 * 24 23 22 42 42 H 1.07999 * 119.96318 * 180.02562 * 25 24 23 43 43 H 1.07997 * 120.04294 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 3.3397 1.6644 -0.0505 5 6 3.8467 3.0802 0.0466 6 6 4.2890 0.5528 -0.2009 7 8 3.8782 -0.5776 -0.3761 8 8 5.6153 0.7867 -0.1446 9 6 6.4939 -0.3587 -0.3006 10 6 7.9288 0.0930 -0.2108 11 8 8.1884 1.2746 -0.1244 12 7 8.9237 -0.8161 -0.2265 13 6 8.6361 -2.1442 -0.4111 14 1 8.0923 -2.4621 -1.2884 15 6 9.0442 -3.0805 0.5301 16 7 9.5960 -2.6839 1.6550 17 14 8.8086 -4.9035 0.1970 18 1 9.5519 -5.2823 -1.0315 19 1 9.3227 -5.6875 1.3487 20 1 7.3636 -5.1897 0.0093 21 6 10.2487 -0.4052 -0.0545 22 6 11.2619 -1.3497 0.0567 23 6 12.5697 -0.9402 0.2260 24 6 12.8719 0.4082 0.2844 25 6 11.8660 1.3510 0.1740 26 6 10.5559 0.9488 0.0046 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8901 32 1 1.3313 2.2414 0.0408 33 1 3.9127 3.5118 -0.9521 34 1 3.1604 3.6712 0.6531 35 1 4.8338 3.0818 0.5090 36 1 6.3191 -0.8211 -1.2721 37 1 6.2905 -1.0827 0.4883 38 1 9.9467 -3.3376 2.2800 39 1 11.0262 -2.4028 0.0152 40 1 13.3576 -1.6738 0.3129 41 1 13.8955 0.7256 0.4172 42 1 12.1055 2.4031 0.2196 43 1 9.7709 1.6855 -0.0811 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000920508364.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:48 Heat of formation + Delta-G solvation = -72.522095 kcal Electronic energy + Delta-G solvation = -26325.513610 eV Core-core repulsion = 22529.616002 eV Total energy + Delta-G solvation = -3795.897609 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.87616 -41.26908 -39.07057 -37.89368 -36.92160 -36.38543 -33.92609 -33.35114 -31.48868 -31.26429 -29.09654 -27.84085 -27.11107 -25.03841 -23.49119 -23.00216 -22.73070 -21.42446 -20.59143 -19.69735 -18.38729 -17.86257 -17.77512 -17.33081 -17.05822 -16.69985 -16.19522 -15.95183 -15.39880 -15.30037 -14.97571 -14.74787 -14.64080 -14.35742 -14.18631 -13.96027 -13.88569 -13.61512 -13.46109 -13.26850 -13.23370 -13.06874 -12.82045 -12.65701 -12.48813 -12.21386 -12.16791 -12.00348 -11.81617 -11.76753 -11.14743 -11.09276 -10.59752 -10.07842 -10.04475 -9.54351 -8.78261 -8.19555 -6.56768 0.11533 0.61780 0.80507 1.33338 1.41932 1.45221 1.53129 1.81638 1.86690 2.21938 2.77423 2.85318 3.31786 3.63637 3.76605 3.80758 4.08441 4.17869 4.22606 4.32105 4.37248 4.37464 4.42244 4.59118 4.62152 4.81006 4.84586 4.92608 4.98491 5.09509 5.10808 5.16604 5.16901 5.19798 5.29130 5.35362 5.40497 5.42768 5.66793 5.77425 5.85519 5.87586 5.98881 6.17529 6.56366 6.65256 6.88970 7.26875 7.63955 8.56857 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014130 B = 0.003840 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.188798 B = 7289.653478 C = 9073.385290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.111 4.111 3 C -0.029 4.029 4 C -0.192 4.192 5 C -0.105 4.105 6 C 0.485 3.515 7 O -0.529 6.529 8 O -0.345 6.345 9 C 0.087 3.913 10 C 0.482 3.518 11 O -0.567 6.567 12 N -0.388 5.388 13 C -0.394 4.394 14 H 0.101 0.899 15 C 0.025 3.975 16 N -0.872 5.872 17 Si 0.981 3.019 18 H -0.259 1.259 19 H -0.278 1.278 20 H -0.263 1.263 21 C 0.147 3.853 22 C -0.120 4.120 23 C -0.125 4.125 24 C -0.160 4.160 25 C -0.120 4.120 26 C -0.214 4.214 27 H 0.056 0.944 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.178 0.822 33 H 0.077 0.923 34 H 0.098 0.902 35 H 0.053 0.947 36 H 0.103 0.897 37 H 0.093 0.907 38 H 0.278 0.722 39 H 0.120 0.880 40 H 0.135 0.865 41 H 0.144 0.856 42 H 0.137 0.863 43 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.388 5.189 -2.379 11.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.148 4.148 3 C -0.047 4.047 4 C -0.193 4.193 5 C -0.162 4.162 6 C 0.333 3.667 7 O -0.421 6.421 8 O -0.261 6.261 9 C 0.010 3.990 10 C 0.274 3.726 11 O -0.452 6.452 12 N -0.097 5.097 13 C -0.520 4.520 14 H 0.118 0.882 15 C -0.182 4.182 16 N -0.504 5.504 17 Si 0.803 3.197 18 H -0.183 1.183 19 H -0.202 1.202 20 H -0.188 1.188 21 C 0.052 3.948 22 C -0.140 4.140 23 C -0.144 4.144 24 C -0.179 4.179 25 C -0.139 4.139 26 C -0.233 4.233 27 H 0.075 0.925 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.094 0.906 31 H 0.084 0.916 32 H 0.195 0.805 33 H 0.096 0.904 34 H 0.117 0.883 35 H 0.072 0.928 36 H 0.121 0.879 37 H 0.111 0.889 38 H 0.088 0.912 39 H 0.138 0.862 40 H 0.153 0.847 41 H 0.162 0.838 42 H 0.155 0.845 43 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -10.403 5.327 -2.170 11.887 hybrid contribution 0.323 -1.448 0.137 1.490 sum -10.079 3.879 -2.034 10.990 Atomic orbital electron populations 1.21836 0.93151 1.02495 1.02981 1.20963 0.97380 0.93708 1.02738 1.24246 0.93622 0.99951 0.86871 1.20967 0.92272 0.94287 1.11782 1.20718 1.01917 0.90147 1.03393 1.22319 0.81571 0.89797 0.72973 1.90814 1.79060 1.25401 1.46871 1.86586 1.17939 1.38635 1.82935 1.22241 0.86032 0.86223 1.04483 1.20746 0.87732 0.85599 0.78545 1.90206 1.83442 1.18391 1.53149 1.40996 1.02199 1.07370 1.59168 1.19682 1.43459 0.80848 1.08026 0.88169 1.26388 0.94172 1.04729 0.92946 1.70138 1.34822 1.37320 1.08162 0.85177 0.79586 0.76427 0.78517 1.18306 1.20240 1.18756 1.18628 0.84922 0.93278 0.97995 1.21122 0.92013 0.99602 1.01294 1.21176 0.95397 0.96793 1.01038 1.21258 0.99805 0.92682 1.04122 1.21243 0.92065 1.00186 1.00361 1.22781 0.99633 0.95873 1.05053 0.92502 0.91254 0.91302 0.90627 0.91597 0.80479 0.90403 0.88302 0.92822 0.87949 0.88907 0.91226 0.86173 0.84729 0.83808 0.84492 0.82394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.85 71.98 0.71 -1.40 16 2 C -0.11 -2.39 4.55 29.85 0.14 -2.26 16 3 C -0.03 -0.55 9.25 24.53 0.23 -0.32 16 4 C -0.19 -4.91 5.99 -18.74 -0.11 -5.02 16 5 C -0.11 -2.26 9.88 71.24 0.70 -1.55 16 6 C 0.49 17.15 7.82 70.10 0.55 17.69 16 7 O -0.53 -20.12 12.95 19.71 0.26 -19.87 16 8 O -0.35 -14.17 8.99 -50.71 -0.46 -14.63 16 9 C 0.09 3.82 4.78 71.23 0.34 4.16 16 10 C 0.48 24.41 7.65 87.66 0.67 25.08 16 11 O -0.57 -30.05 12.90 15.69 0.20 -29.85 16 12 N -0.39 -20.29 2.62 -458.89 -1.20 -21.49 16 13 C -0.39 -19.77 7.60 84.02 0.64 -19.13 16 14 H 0.10 4.75 7.84 -2.91 -0.02 4.73 16 15 C 0.02 1.21 3.63 84.91 0.31 1.52 16 16 N -0.87 -45.66 11.15 21.65 0.24 -45.41 16 17 Si 0.98 38.20 29.56 68.60 2.03 40.23 16 18 H -0.26 -9.66 7.11 99.48 0.71 -8.96 16 19 H -0.28 -10.64 7.11 99.48 0.71 -9.94 16 20 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 21 C 0.15 7.63 6.06 38.22 0.23 7.86 16 22 C -0.12 -5.77 7.83 22.41 0.18 -5.59 16 23 C -0.13 -5.04 10.04 22.25 0.22 -4.82 16 24 C -0.16 -5.86 10.04 22.30 0.22 -5.64 16 25 C -0.12 -4.81 10.04 22.25 0.22 -4.58 16 26 C -0.21 -10.37 9.05 22.41 0.20 -10.17 16 27 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.08 2.00 6.64 -2.39 -0.02 1.98 16 31 H 0.07 1.68 7.76 -2.39 -0.02 1.66 16 32 H 0.18 1.81 7.99 -2.91 -0.02 1.79 16 33 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.10 1.43 8.07 -2.39 -0.02 1.41 16 35 H 0.05 1.45 7.61 -2.38 -0.02 1.44 16 36 H 0.10 4.20 8.14 -2.39 -0.02 4.18 16 37 H 0.09 4.21 8.02 -2.39 -0.02 4.20 16 38 H 0.28 13.71 8.32 -92.71 -0.77 12.94 16 39 H 0.12 6.04 5.06 -2.91 -0.01 6.02 16 40 H 0.13 4.51 8.06 -2.91 -0.02 4.49 16 41 H 0.14 4.05 8.06 -2.91 -0.02 4.03 16 42 H 0.14 4.52 8.06 -2.91 -0.02 4.50 16 43 H 0.16 8.13 4.52 -63.07 -0.29 7.84 16 Total: -1.00 -65.62 360.28 7.26 -58.36 By element: Atomic # 1 Polarization: 36.09 SS G_CDS: 0.75 Total: 36.84 kcal Atomic # 6 Polarization: -9.62 SS G_CDS: 5.45 Total: -4.17 kcal Atomic # 7 Polarization: -65.94 SS G_CDS: -0.96 Total: -66.91 kcal Atomic # 8 Polarization: -64.35 SS G_CDS: 0.00 Total: -64.35 kcal Atomic # 14 Polarization: 38.20 SS G_CDS: 2.03 Total: 40.23 kcal Total: -65.62 7.26 -58.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000920508364.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.167 kcal (2) G-P(sol) polarization free energy of solvation -65.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds