Wall clock time and date at job start Tue Mar 31 2020 12:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47498 * 2 1 4 4 H 1.09000 * 115.54717 * 29.32672 * 3 2 1 5 5 C 1.52996 * 117.52074 * 243.63166 * 3 2 1 6 6 C 1.52998 * 60.00280 * 252.51718 * 5 3 2 7 7 H 1.08996 * 117.52073 * 107.47813 * 6 5 3 8 8 C 1.52998 * 117.49745 * 252.51558 * 6 5 3 9 9 O 1.45202 * 109.46897 * 243.61856 * 8 6 5 10 10 C 1.34752 * 117.00400 * 179.97438 * 9 8 6 11 11 O 1.21508 * 119.99517 * 359.97438 * 10 9 8 12 12 C 1.47457 * 120.00181 * 179.97438 * 10 9 8 13 13 C 1.39836 * 120.06637 * 179.97438 * 12 10 9 14 14 C 1.37610 * 119.93157 * 179.97438 * 13 12 10 15 15 C 1.39272 * 120.06753 * 359.97438 * 14 13 12 16 16 N 1.39073 * 119.92907 * 180.02562 * 15 14 13 17 17 C 1.34781 * 119.99829 * 146.55333 * 16 15 14 18 18 O 1.21721 * 119.99598 * 354.57686 * 17 16 15 19 19 C 1.46196 * 120.00166 * 174.85938 * 17 16 15 20 20 H 1.08001 * 119.99798 * 359.97438 * 19 17 16 21 21 C 1.40121 * 119.99942 * 180.02562 * 19 17 16 22 22 N 1.30634 * 120.00089 * 359.97438 * 21 19 17 23 23 Si 1.86802 * 119.99798 * 179.97438 * 21 19 17 24 24 H 1.48506 * 109.46924 * 59.99885 * 23 21 19 25 25 H 1.48494 * 109.47115 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47088 * 299.99841 * 23 21 19 27 27 C 1.39269 * 120.13494 * 0.28273 * 15 14 13 28 28 C 1.37613 * 120.06832 * 359.48148 * 27 15 14 29 29 H 1.08999 * 109.46891 * 59.99680 * 1 2 3 30 30 H 1.08997 * 109.47462 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46775 * 299.99966 * 1 2 3 32 32 H 1.09002 * 109.47276 * 240.00172 * 2 1 3 33 33 H 1.09002 * 109.47302 * 120.00017 * 2 1 3 34 34 H 1.08997 * 117.50396 * 145.02529 * 5 3 2 35 35 H 1.09002 * 117.49638 * 0.02562 * 5 3 2 36 36 H 1.08992 * 109.47698 * 123.61957 * 8 6 5 37 37 H 1.09004 * 109.47441 * 3.61162 * 8 6 5 38 38 H 1.08002 * 120.03560 * 0.02562 * 13 12 10 39 39 H 1.08003 * 119.96720 * 180.02562 * 14 13 12 40 40 H 0.96996 * 120.00048 * 326.54683 * 16 15 14 41 41 H 0.97003 * 120.00059 * 180.02562 * 22 21 19 42 42 H 1.07998 * 119.96646 * 179.74082 * 27 15 14 43 43 H 1.07995 * 120.03142 * 180.25240 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.3884 2.1715 0.4817 5 6 2.8439 1.9081 -1.2157 6 6 3.5502 1.6578 0.1182 7 1 4.1804 0.7719 0.1960 8 6 4.0301 2.8800 0.9037 9 8 5.4782 2.8511 1.0066 10 6 6.0645 3.8649 1.6732 11 8 5.3843 4.7491 2.1548 12 6 7.5315 3.9012 1.8181 13 6 8.1414 4.9529 2.5091 14 6 9.5106 4.9837 2.6432 15 6 10.2887 3.9687 2.0920 16 7 11.6722 4.0024 2.2296 17 6 12.3662 2.8528 2.3444 18 8 11.7761 1.7914 2.4268 19 6 13.8276 2.8811 2.3760 20 1 14.3510 3.8233 2.3070 21 6 14.5491 1.6858 2.4947 22 7 13.9160 0.5462 2.5777 23 14 16.4163 1.7220 2.5344 24 1 16.8712 2.5323 3.6928 25 1 16.9356 0.3370 2.6653 26 1 16.9265 2.3257 1.2772 27 6 9.6846 2.9227 1.3986 28 6 8.3155 2.8838 1.2654 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.7212 2.9433 -1.5338 35 1 3.0091 1.1868 -2.0160 36 1 3.5945 2.8640 1.9026 37 1 3.7207 3.7885 0.3868 38 1 7.5384 5.7397 2.9378 39 1 9.9822 5.7955 3.1771 40 1 12.1376 4.8533 2.2430 41 1 14.4154 -0.2813 2.6602 42 1 10.2909 2.1392 0.9687 43 1 7.8474 2.0703 0.7311 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000922182101.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:38 Heat of formation + Delta-G solvation = -89.396202 kcal Electronic energy + Delta-G solvation = -24660.655700 eV Core-core repulsion = 20864.026375 eV Total energy + Delta-G solvation = -3796.629325 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.37795 -39.20476 -38.40046 -36.98172 -36.06799 -33.66786 -32.64069 -32.56257 -30.57799 -29.72445 -27.74377 -26.44640 -24.15573 -23.52662 -22.32465 -21.31232 -20.98240 -20.60922 -19.76699 -17.83773 -17.58391 -16.94720 -16.35786 -16.23553 -15.62143 -15.29776 -14.97142 -14.51821 -14.46740 -14.05840 -13.90475 -13.68620 -13.25268 -13.12237 -12.78520 -12.71543 -12.60078 -12.41616 -12.05510 -11.91778 -11.75192 -11.52653 -11.38401 -11.33684 -11.15081 -10.94453 -10.82518 -10.68469 -10.46921 -10.44852 -10.14733 -9.98920 -9.50534 -9.00495 -8.62969 -7.91096 -7.31741 -6.45554 -4.93899 1.14185 1.86061 2.66874 2.85632 3.03682 3.08730 3.10485 3.44619 3.90095 4.12646 4.24373 4.41003 4.45046 4.47214 4.55759 4.80993 4.93062 4.98569 5.05065 5.09358 5.23567 5.34109 5.34118 5.37029 5.38965 5.51137 5.53463 5.64731 5.72414 5.75768 5.78172 5.87393 5.92813 6.02631 6.07426 6.38495 6.46781 6.70380 6.78424 6.88264 7.15098 7.20294 7.57423 7.86637 7.96907 8.01282 8.73754 9.03286 10.23605 10.44396 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021038 B = 0.002127 C = 0.001967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.585505 B =13162.154964 C =14234.203680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.096 4.096 3 C -0.140 4.140 4 H 0.106 0.894 5 C -0.171 4.171 6 C -0.154 4.154 7 H 0.119 0.881 8 C 0.100 3.900 9 O -0.351 6.351 10 C 0.519 3.481 11 O -0.526 6.526 12 C -0.188 4.188 13 C -0.027 4.027 14 C -0.195 4.195 15 C 0.237 3.763 16 N -0.694 5.694 17 C 0.538 3.462 18 O -0.555 6.555 19 C -0.536 4.536 20 H 0.073 0.927 21 C 0.086 3.914 22 N -0.756 5.756 23 Si 0.915 3.085 24 H -0.266 1.266 25 H -0.278 1.278 26 H -0.266 1.266 27 C -0.149 4.149 28 C -0.036 4.036 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.130 0.870 39 H 0.127 0.873 40 H 0.397 0.603 41 H 0.274 0.726 42 H 0.146 0.854 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.055 2.973 -5.446 19.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.133 4.133 3 C -0.158 4.158 4 H 0.124 0.876 5 C -0.208 4.208 6 C -0.172 4.172 7 H 0.137 0.863 8 C 0.026 3.974 9 O -0.268 6.268 10 C 0.367 3.633 11 O -0.417 6.417 12 C -0.191 4.191 13 C -0.046 4.046 14 C -0.216 4.216 15 C 0.135 3.865 16 N -0.335 5.335 17 C 0.345 3.655 18 O -0.436 6.436 19 C -0.571 4.571 20 H 0.092 0.908 21 C -0.136 4.136 22 N -0.384 5.384 23 Si 0.739 3.261 24 H -0.191 1.191 25 H -0.203 1.203 26 H -0.190 1.190 27 C -0.170 4.170 28 C -0.056 4.056 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.114 0.886 35 H 0.117 0.883 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.148 0.852 39 H 0.145 0.855 40 H 0.231 0.769 41 H 0.085 0.915 42 H 0.164 0.836 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -18.553 2.181 -5.240 19.401 hybrid contribution 1.051 0.551 0.151 1.196 sum -17.502 2.732 -5.089 18.430 Atomic orbital electron populations 1.21745 0.95353 1.01676 1.01917 1.21143 0.96013 0.93782 1.02362 1.22522 0.92391 0.98573 1.02363 0.87571 1.23281 1.03333 1.02631 0.91511 1.22263 0.95212 0.99785 0.99933 0.86291 1.22461 0.77316 0.97200 1.00392 1.86558 1.23257 1.47502 1.69473 1.21246 0.89303 0.78549 0.74211 1.90781 1.65623 1.38152 1.47122 1.18778 0.88179 1.00893 1.11259 1.20823 0.93915 0.95705 0.94138 1.20822 0.93119 1.02117 1.05556 1.18296 0.85448 0.93473 0.89310 1.44312 1.03256 1.11704 1.74253 1.18458 0.88453 0.81135 0.77414 1.90656 1.70534 1.28984 1.53443 1.20839 0.88938 0.94284 1.53076 0.90839 1.25758 1.00585 0.94769 0.92510 1.69961 1.37222 0.98400 1.32797 0.86300 0.82023 0.78116 0.79663 1.19063 1.20319 1.19039 1.21330 0.94325 1.00587 1.00743 1.21240 0.93282 0.95906 0.95125 0.92617 0.92623 0.92652 0.91608 0.91344 0.88610 0.88327 0.90913 0.91233 0.85233 0.85465 0.76903 0.91478 0.83614 0.85115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.87 37.16 0.37 -0.51 16 2 C -0.10 -0.65 6.22 -26.73 -0.17 -0.82 16 3 C -0.14 -1.08 5.46 -90.62 -0.49 -1.57 16 4 H 0.11 0.77 8.07 -51.93 -0.42 0.35 16 5 C -0.17 -1.36 9.82 -26.73 -0.26 -1.63 16 6 C -0.15 -1.46 5.79 -90.62 -0.52 -1.99 16 7 H 0.12 1.18 8.14 -51.93 -0.42 0.76 16 8 C 0.10 1.17 5.76 37.16 0.21 1.38 16 9 O -0.35 -5.13 9.46 -40.63 -0.38 -5.52 16 10 C 0.52 8.55 7.89 34.49 0.27 8.82 16 11 O -0.53 -9.37 16.13 -19.27 -0.31 -9.68 16 12 C -0.19 -3.20 5.88 -104.95 -0.62 -3.81 16 13 C -0.03 -0.43 9.58 -39.21 -0.38 -0.81 16 14 C -0.19 -3.23 9.94 -39.43 -0.39 -3.62 16 15 C 0.24 4.68 6.27 -83.81 -0.53 4.16 16 16 N -0.69 -14.63 5.30 -11.19 -0.06 -14.68 16 17 C 0.54 14.19 7.46 -13.06 -0.10 14.10 16 18 O -0.55 -16.55 12.70 5.17 0.07 -16.49 16 19 C -0.54 -13.98 9.54 -35.68 -0.34 -14.32 16 20 H 0.07 1.72 7.85 -52.49 -0.41 1.31 16 21 C 0.09 2.22 5.50 -17.35 -0.10 2.13 16 22 N -0.76 -21.20 11.82 55.55 0.66 -20.54 16 23 Si 0.92 18.80 29.56 -169.99 -5.02 13.77 16 24 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 25 H -0.28 -5.62 7.11 56.52 0.40 -5.21 16 26 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 27 C -0.15 -3.01 8.62 -39.43 -0.34 -3.35 16 28 C -0.04 -0.64 9.60 -39.21 -0.38 -1.01 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.43 7.88 -51.93 -0.41 0.02 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.10 0.73 8.03 -51.93 -0.42 0.31 16 35 H 0.10 0.72 8.03 -51.93 -0.42 0.30 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.07 0.78 7.87 -51.93 -0.41 0.37 16 38 H 0.13 1.89 7.64 -52.49 -0.40 1.49 16 39 H 0.13 1.78 8.06 -52.48 -0.42 1.36 16 40 H 0.40 7.01 8.79 -40.82 -0.36 6.65 16 41 H 0.27 6.98 8.29 -40.82 -0.34 6.64 16 42 H 0.15 3.33 6.42 -52.49 -0.34 3.00 16 43 H 0.13 2.05 7.60 -52.49 -0.40 1.65 16 LS Contribution 372.87 15.07 5.62 5.62 Total: -1.00 -31.84 372.87 -9.26 -41.10 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -6.07 Total: 9.28 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: -3.75 Total: -2.87 kcal Atomic # 7 Polarization: -35.82 SS G_CDS: 0.60 Total: -35.22 kcal Atomic # 8 Polarization: -31.06 SS G_CDS: -0.63 Total: -31.69 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.02 Total: 13.77 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.84 -9.26 -41.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922182101.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.294 kcal (2) G-P(sol) polarization free energy of solvation -31.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds