Wall clock time and date at job start Tue Mar 31 2020 12:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47498 * 2 1 4 4 H 1.09000 * 115.54717 * 29.32672 * 3 2 1 5 5 C 1.52996 * 117.52074 * 243.63166 * 3 2 1 6 6 C 1.52998 * 60.00280 * 252.51718 * 5 3 2 7 7 H 1.08996 * 117.52073 * 107.47813 * 6 5 3 8 8 C 1.52998 * 117.49745 * 252.51558 * 6 5 3 9 9 O 1.45202 * 109.46897 * 243.61856 * 8 6 5 10 10 C 1.34752 * 117.00400 * 179.97438 * 9 8 6 11 11 O 1.21508 * 119.99517 * 359.97438 * 10 9 8 12 12 C 1.47457 * 120.00181 * 179.97438 * 10 9 8 13 13 C 1.39836 * 120.06637 * 179.97438 * 12 10 9 14 14 C 1.37610 * 119.93157 * 179.97438 * 13 12 10 15 15 C 1.39272 * 120.06753 * 359.97438 * 14 13 12 16 16 N 1.39073 * 119.92907 * 180.02562 * 15 14 13 17 17 C 1.34781 * 119.99829 * 146.55333 * 16 15 14 18 18 O 1.21721 * 119.99598 * 354.57686 * 17 16 15 19 19 C 1.46196 * 120.00166 * 174.85938 * 17 16 15 20 20 H 1.08001 * 119.99798 * 359.97438 * 19 17 16 21 21 C 1.40121 * 119.99942 * 180.02562 * 19 17 16 22 22 N 1.30634 * 120.00089 * 359.97438 * 21 19 17 23 23 Si 1.86802 * 119.99798 * 179.97438 * 21 19 17 24 24 H 1.48506 * 109.46924 * 59.99885 * 23 21 19 25 25 H 1.48494 * 109.47115 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47088 * 299.99841 * 23 21 19 27 27 C 1.39269 * 120.13494 * 0.28273 * 15 14 13 28 28 C 1.37613 * 120.06832 * 359.48148 * 27 15 14 29 29 H 1.08999 * 109.46891 * 59.99680 * 1 2 3 30 30 H 1.08997 * 109.47462 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46775 * 299.99966 * 1 2 3 32 32 H 1.09002 * 109.47276 * 240.00172 * 2 1 3 33 33 H 1.09002 * 109.47302 * 120.00017 * 2 1 3 34 34 H 1.08997 * 117.50396 * 145.02529 * 5 3 2 35 35 H 1.09002 * 117.49638 * 0.02562 * 5 3 2 36 36 H 1.08992 * 109.47698 * 123.61957 * 8 6 5 37 37 H 1.09004 * 109.47441 * 3.61162 * 8 6 5 38 38 H 1.08002 * 120.03560 * 0.02562 * 13 12 10 39 39 H 1.08003 * 119.96720 * 180.02562 * 14 13 12 40 40 H 0.96996 * 120.00048 * 326.54683 * 16 15 14 41 41 H 0.97003 * 120.00059 * 180.02562 * 22 21 19 42 42 H 1.07998 * 119.96646 * 179.74082 * 27 15 14 43 43 H 1.07995 * 120.03142 * 180.25240 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.3884 2.1715 0.4817 5 6 2.8439 1.9081 -1.2157 6 6 3.5502 1.6578 0.1182 7 1 4.1804 0.7719 0.1960 8 6 4.0301 2.8800 0.9037 9 8 5.4782 2.8511 1.0066 10 6 6.0645 3.8649 1.6732 11 8 5.3843 4.7491 2.1548 12 6 7.5315 3.9012 1.8181 13 6 8.1414 4.9529 2.5091 14 6 9.5106 4.9837 2.6432 15 6 10.2887 3.9687 2.0920 16 7 11.6722 4.0024 2.2296 17 6 12.3662 2.8528 2.3444 18 8 11.7761 1.7914 2.4268 19 6 13.8276 2.8811 2.3760 20 1 14.3510 3.8233 2.3070 21 6 14.5491 1.6858 2.4947 22 7 13.9160 0.5462 2.5777 23 14 16.4163 1.7220 2.5344 24 1 16.8712 2.5323 3.6928 25 1 16.9356 0.3370 2.6653 26 1 16.9265 2.3257 1.2772 27 6 9.6846 2.9227 1.3986 28 6 8.3155 2.8838 1.2654 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.7212 2.9433 -1.5338 35 1 3.0091 1.1868 -2.0160 36 1 3.5945 2.8640 1.9026 37 1 3.7207 3.7885 0.3868 38 1 7.5384 5.7397 2.9378 39 1 9.9822 5.7955 3.1771 40 1 12.1376 4.8533 2.2430 41 1 14.4154 -0.2813 2.6602 42 1 10.2909 2.1392 0.9687 43 1 7.8474 2.0703 0.7311 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000922182101.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:38 Heat of formation + Delta-G solvation = -106.524853 kcal Electronic energy + Delta-G solvation = -24661.398454 eV Core-core repulsion = 20864.026375 eV Total energy + Delta-G solvation = -3797.372079 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.67095 -40.74010 -39.25847 -38.61022 -37.30416 -35.42812 -34.57711 -33.20280 -32.00154 -31.24135 -28.90633 -28.16316 -25.03835 -24.65273 -23.77724 -22.60687 -21.90523 -21.52937 -21.19637 -19.57247 -18.93653 -18.28164 -17.81089 -17.55741 -17.43721 -16.27504 -16.06282 -15.74352 -15.54248 -15.42481 -15.02843 -14.85151 -14.74541 -14.56629 -14.24845 -14.14141 -13.58135 -13.48105 -13.31610 -13.12981 -12.95013 -12.76978 -12.73728 -12.47062 -12.20442 -12.15229 -12.08041 -12.01904 -11.90055 -11.68558 -11.17164 -10.90770 -10.88860 -10.73899 -10.13347 -9.85283 -8.95516 -8.39305 -6.97491 -0.28462 0.44300 1.39480 1.41279 1.50548 1.54909 1.56063 2.19992 2.35262 2.73247 2.78184 2.87900 3.44363 3.53576 3.75789 3.80569 3.87497 3.99307 4.00534 4.13822 4.25322 4.27843 4.35596 4.46350 4.48742 4.49731 4.63513 4.66246 4.81765 4.93727 5.00599 5.08140 5.15962 5.20292 5.21571 5.24050 5.28634 5.32711 5.38475 5.38650 5.48452 5.66662 5.76722 6.12058 6.23885 6.68395 6.75702 7.25049 8.28989 8.53477 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021038 B = 0.002127 C = 0.001967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.585505 B =13162.154964 C =14234.203680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.097 4.097 3 C -0.128 4.128 4 H 0.113 0.887 5 C -0.165 4.165 6 C -0.170 4.170 7 H 0.112 0.888 8 C 0.097 3.903 9 O -0.355 6.355 10 C 0.524 3.476 11 O -0.538 6.538 12 C -0.187 4.187 13 C -0.022 4.022 14 C -0.176 4.176 15 C 0.209 3.791 16 N -0.686 5.686 17 C 0.526 3.474 18 O -0.602 6.602 19 C -0.562 4.562 20 H 0.096 0.904 21 C 0.030 3.970 22 N -0.810 5.810 23 Si 1.000 3.000 24 H -0.253 1.253 25 H -0.275 1.275 26 H -0.253 1.253 27 C -0.170 4.170 28 C -0.031 4.031 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.101 0.899 35 H 0.106 0.894 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.155 0.845 39 H 0.160 0.840 40 H 0.413 0.587 41 H 0.279 0.721 42 H 0.109 0.891 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.584 4.563 -5.457 19.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.134 4.134 3 C -0.146 4.146 4 H 0.131 0.869 5 C -0.202 4.202 6 C -0.188 4.188 7 H 0.130 0.870 8 C 0.024 3.976 9 O -0.272 6.272 10 C 0.372 3.628 11 O -0.430 6.430 12 C -0.189 4.189 13 C -0.041 4.041 14 C -0.197 4.197 15 C 0.109 3.891 16 N -0.330 5.330 17 C 0.334 3.666 18 O -0.487 6.487 19 C -0.597 4.597 20 H 0.114 0.886 21 C -0.187 4.187 22 N -0.439 5.439 23 Si 0.819 3.181 24 H -0.177 1.177 25 H -0.200 1.200 26 H -0.177 1.177 27 C -0.191 4.191 28 C -0.050 4.050 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.120 0.880 35 H 0.124 0.876 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.172 0.828 39 H 0.178 0.822 40 H 0.250 0.750 41 H 0.089 0.911 42 H 0.127 0.873 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -19.123 3.822 -5.267 20.200 hybrid contribution 0.997 0.084 0.116 1.007 sum -18.127 3.907 -5.151 19.245 Atomic orbital electron populations 1.21733 0.94474 1.02170 1.02146 1.21174 0.96761 0.93150 1.02357 1.22607 0.91026 0.99281 1.01710 0.86908 1.23372 1.02356 1.03251 0.91236 1.22214 0.96478 0.98767 1.01385 0.87012 1.22710 0.75430 0.98515 1.00969 1.86552 1.25204 1.46660 1.68740 1.21072 0.88963 0.78681 0.74116 1.90773 1.65815 1.38692 1.47726 1.18992 0.88784 1.00648 1.10490 1.21130 0.93893 0.95789 0.93248 1.21066 0.93033 1.01450 1.04103 1.18520 0.85011 0.94770 0.90831 1.43799 1.03926 1.11001 1.74231 1.18775 0.89206 0.81729 0.76899 1.90617 1.71521 1.31112 1.55430 1.21405 0.89362 0.95663 1.53300 0.88559 1.26997 1.06591 0.93942 0.91150 1.70126 1.39892 0.99489 1.34401 0.85016 0.74288 0.78361 0.80395 1.17706 1.20016 1.17718 1.21133 0.95227 1.00502 1.02263 1.21265 0.92170 0.96559 0.94983 0.92279 0.92053 0.92524 0.91357 0.91683 0.88050 0.87562 0.90847 0.90670 0.82783 0.82211 0.75034 0.91129 0.87253 0.83891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.87 71.98 0.71 -0.79 16 2 C -0.10 -1.19 6.22 30.59 0.19 -1.00 16 3 C -0.13 -1.78 5.46 -10.79 -0.06 -1.84 16 4 H 0.11 1.43 8.07 -2.39 -0.02 1.41 16 5 C -0.17 -2.38 9.82 30.59 0.30 -2.08 16 6 C -0.17 -3.08 5.79 -10.79 -0.06 -3.15 16 7 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 8 C 0.10 2.16 5.76 71.98 0.41 2.57 16 9 O -0.35 -10.09 9.46 -56.62 -0.54 -10.62 16 10 C 0.52 16.55 7.89 70.25 0.55 17.10 16 11 O -0.54 -18.19 16.13 19.81 0.32 -17.87 16 12 C -0.19 -6.12 5.88 -20.07 -0.12 -6.24 16 13 C -0.02 -0.66 9.58 22.51 0.22 -0.44 16 14 C -0.18 -5.49 9.94 22.37 0.22 -5.27 16 15 C 0.21 8.32 6.27 38.49 0.24 8.56 16 16 N -0.69 -29.32 5.30 -307.51 -1.63 -30.95 16 17 C 0.53 28.72 7.46 86.31 0.64 29.36 16 18 O -0.60 -37.83 12.70 -4.41 -0.06 -37.89 16 19 C -0.56 -29.68 9.54 24.80 0.24 -29.45 16 20 H 0.10 4.45 7.85 -2.91 -0.02 4.42 16 21 C 0.03 1.58 5.50 85.33 0.47 2.05 16 22 N -0.81 -47.05 11.82 21.85 0.26 -46.80 16 23 Si 1.00 38.37 29.56 68.60 2.03 40.40 16 24 H -0.25 -9.12 7.11 99.48 0.71 -8.41 16 25 H -0.28 -10.30 7.11 99.48 0.71 -9.60 16 26 H -0.25 -9.13 7.11 99.48 0.71 -8.42 16 27 C -0.17 -7.18 8.62 22.37 0.19 -6.98 16 28 C -0.03 -1.09 9.60 22.51 0.22 -0.88 16 29 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.06 0.55 8.14 -2.39 -0.02 0.54 16 31 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.07 0.81 7.88 -2.39 -0.02 0.79 16 33 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.10 1.36 8.03 -2.39 -0.02 1.34 16 35 H 0.11 1.37 8.03 -2.39 -0.02 1.35 16 36 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.08 1.58 7.87 -2.38 -0.02 1.56 16 38 H 0.15 3.96 7.64 -2.91 -0.02 3.93 16 39 H 0.16 3.92 8.06 -2.91 -0.02 3.90 16 40 H 0.41 14.38 8.79 -92.71 -0.81 13.57 16 41 H 0.28 14.69 8.29 -92.71 -0.77 13.92 16 42 H 0.11 5.42 6.42 -2.91 -0.02 5.41 16 43 H 0.14 4.57 7.60 -2.91 -0.02 4.55 16 Total: -1.00 -71.24 372.87 4.97 -66.27 By element: Atomic # 1 Polarization: 35.71 SS G_CDS: 0.22 Total: 35.92 kcal Atomic # 6 Polarization: -2.84 SS G_CDS: 4.37 Total: 1.53 kcal Atomic # 7 Polarization: -76.37 SS G_CDS: -1.37 Total: -77.75 kcal Atomic # 8 Polarization: -66.10 SS G_CDS: -0.27 Total: -66.38 kcal Atomic # 14 Polarization: 38.37 SS G_CDS: 2.03 Total: 40.40 kcal Total: -71.24 4.97 -66.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922182101.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.258 kcal (2) G-P(sol) polarization free energy of solvation -71.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds